Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313G01f
         (476 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42351| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.017
SB_32755| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_10763| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_35454| Best HMM Match : SRP-alpha_N (HMM E-Value=6.1)               28   4.5  
SB_19834| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_42351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 249

 Score = 35.9 bits (79), Expect = 0.017
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -3

Query: 366 KLXFIXGVAKK-PESDDEKKRKSKWDQAAPNI 274
           K+ F+ G  K  P SDD KKRKSKWD ++  +
Sbjct: 181 KIEFMSGTKKTGPASDDAKKRKSKWDVSSTGV 212


>SB_32755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 701

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = -3

Query: 315 KKRKSKWDQAAPNIGSKPNIKQPGLVQQPLTTNITGTKGTVIAAFGSLPKKPK 157
           K+  S WD   P +    +  +PG +  PL+  +TG +    +   SLP   +
Sbjct: 298 KESTSSWDDIQPTVVIIDSEFEPGKIMSPLSRTVTGCEDGNDSLGTSLPSSSR 350


>SB_10763| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -3

Query: 321 DEKKRKSKWDQAAPNIGSKPNIKQPGLVQQPLTTNITGTKGTVIAA 184
           +++KRK++    A  +GS P  K P     P +     T G  +AA
Sbjct: 67  EKEKRKAEKAAEAAAVGSSPAAKTPSSASSPSSATAATTAGKPVAA 112


>SB_35454| Best HMM Match : SRP-alpha_N (HMM E-Value=6.1)
          Length = 211

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = -3

Query: 357 FIXGVAKKPESDDEKKRKSKWDQAAPNIGSKPNIKQPGLVQQPLTTNITGTK-GTVIAAF 181
           F  G AK+P +      K +      N+G K  +++ G   +     +T  +  T +++ 
Sbjct: 21  FSSGNAKEPSNQQSTSSKFEEKGTPANVGEKNTLQKSGFAAKLPPPKVTVKRTATHLSSL 80

Query: 180 GSLPKKPK 157
            SL  KPK
Sbjct: 81  ASLLPKPK 88


>SB_19834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 294 DQAAPNIGSKPNIKQPGLVQQPLTT 220
           D   P +G+KP+I  P +   PL T
Sbjct: 23  DSTQPRLGNKPSIPDPTIAMVPLET 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,253,153
Number of Sequences: 59808
Number of extensions: 138944
Number of successful extensions: 394
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)