BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS313G01f (476 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U23510-10|AAC46780.1| 979|Caenorhabditis elegans Hypothetical p... 30 0.75 Z71260-1|CAA95798.1| 744|Caenorhabditis elegans Hypothetical pr... 30 0.99 U60113-1|AAB03334.1| 715|Caenorhabditis elegans SEM-4 short for... 30 0.99 U60112-1|AAB03333.1| 744|Caenorhabditis elegans SEM-4 long form... 30 0.99 Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical p... 28 3.0 Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr... 28 4.0 Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr... 28 4.0 AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical ... 27 7.0 >U23510-10|AAC46780.1| 979|Caenorhabditis elegans Hypothetical protein R12C12.1a protein. Length = 979 Score = 30.3 bits (65), Expect = 0.75 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = -3 Query: 330 ESDDEKKRKSKWDQAAPNIGSKPNIKQPGLVQQPL 226 E D K R+ +W+ A P IG+ P+ + +Q P+ Sbjct: 467 EKDVTKLREERWEVACPLIGNSPHSRSSLFLQHPV 501 >Z71260-1|CAA95798.1| 744|Caenorhabditis elegans Hypothetical protein F15C11.1 protein. Length = 744 Score = 29.9 bits (64), Expect = 0.99 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = -3 Query: 330 ESDDEKKRKSKWDQAAPNIGSKPNIKQPGLVQQP 229 +SDD+ K S ++ A P + PN+ P L++QP Sbjct: 223 KSDDKSKMASLFNHAFPPFAAFPNMPPPFLMRQP 256 >U60113-1|AAB03334.1| 715|Caenorhabditis elegans SEM-4 short form protein. Length = 715 Score = 29.9 bits (64), Expect = 0.99 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = -3 Query: 330 ESDDEKKRKSKWDQAAPNIGSKPNIKQPGLVQQP 229 +SDD+ K S ++ A P + PN+ P L++QP Sbjct: 194 KSDDKSKMASLFNHAFPPFAAFPNMPPPFLMRQP 227 >U60112-1|AAB03333.1| 744|Caenorhabditis elegans SEM-4 long form protein. Length = 744 Score = 29.9 bits (64), Expect = 0.99 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = -3 Query: 330 ESDDEKKRKSKWDQAAPNIGSKPNIKQPGLVQQP 229 +SDD+ K S ++ A P + PN+ P L++QP Sbjct: 223 KSDDKSKMASLFNHAFPPFAAFPNMPPPFLMRQP 256 >Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical protein C30H6.4 protein. Length = 476 Score = 28.3 bits (60), Expect = 3.0 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 3/49 (6%) Frame = -3 Query: 327 SDDEKKRKSKWDQAAPNIGSKPNIKQPGLVQQ---PLTTNITGTKGTVI 190 SDD K+D NIG+K K+ GLV + P TT T T T I Sbjct: 225 SDDGSNVICKYDPNTLNIGAKYEWKKCGLVPETTKPTTTTPTTTTTTTI 273 >Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein T04F3.1 protein. Length = 3517 Score = 27.9 bits (59), Expect = 4.0 Identities = 11/18 (61%), Positives = 15/18 (83%) Frame = -3 Query: 357 FIXGVAKKPESDDEKKRK 304 FI G +KKP++DDEK R+ Sbjct: 1406 FIHGSSKKPKNDDEKIRR 1423 >Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein T04F3.1 protein. Length = 3517 Score = 27.9 bits (59), Expect = 4.0 Identities = 11/18 (61%), Positives = 15/18 (83%) Frame = -3 Query: 357 FIXGVAKKPESDDEKKRK 304 FI G +KKP++DDEK R+ Sbjct: 1406 FIHGSSKKPKNDDEKIRR 1423 >AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical protein Y106G6D.7 protein. Length = 948 Score = 27.1 bits (57), Expect = 7.0 Identities = 8/17 (47%), Positives = 13/17 (76%) Frame = -3 Query: 330 ESDDEKKRKSKWDQAAP 280 E DD+K R+S+W+ +P Sbjct: 546 EDDDKKSRRSRWENTSP 562 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 7,057,982 Number of Sequences: 27780 Number of extensions: 105556 Number of successful extensions: 371 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 342 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 371 length of database: 12,740,198 effective HSP length: 76 effective length of database: 10,628,918 effective search space used: 871571276 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -