Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313G01f
         (476 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23510-10|AAC46780.1|  979|Caenorhabditis elegans Hypothetical p...    30   0.75 
Z71260-1|CAA95798.1|  744|Caenorhabditis elegans Hypothetical pr...    30   0.99 
U60113-1|AAB03334.1|  715|Caenorhabditis elegans SEM-4 short for...    30   0.99 
U60112-1|AAB03333.1|  744|Caenorhabditis elegans SEM-4 long form...    30   0.99 
Z81044-11|CAB02809.2|  476|Caenorhabditis elegans Hypothetical p...    28   3.0  
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr...    28   4.0  
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr...    28   4.0  
AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical ...    27   7.0  

>U23510-10|AAC46780.1|  979|Caenorhabditis elegans Hypothetical
           protein R12C12.1a protein.
          Length = 979

 Score = 30.3 bits (65), Expect = 0.75
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 330 ESDDEKKRKSKWDQAAPNIGSKPNIKQPGLVQQPL 226
           E D  K R+ +W+ A P IG+ P+ +    +Q P+
Sbjct: 467 EKDVTKLREERWEVACPLIGNSPHSRSSLFLQHPV 501


>Z71260-1|CAA95798.1|  744|Caenorhabditis elegans Hypothetical
           protein F15C11.1 protein.
          Length = 744

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 330 ESDDEKKRKSKWDQAAPNIGSKPNIKQPGLVQQP 229
           +SDD+ K  S ++ A P   + PN+  P L++QP
Sbjct: 223 KSDDKSKMASLFNHAFPPFAAFPNMPPPFLMRQP 256


>U60113-1|AAB03334.1|  715|Caenorhabditis elegans SEM-4 short form
           protein.
          Length = 715

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 330 ESDDEKKRKSKWDQAAPNIGSKPNIKQPGLVQQP 229
           +SDD+ K  S ++ A P   + PN+  P L++QP
Sbjct: 194 KSDDKSKMASLFNHAFPPFAAFPNMPPPFLMRQP 227


>U60112-1|AAB03333.1|  744|Caenorhabditis elegans SEM-4 long form
           protein.
          Length = 744

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 330 ESDDEKKRKSKWDQAAPNIGSKPNIKQPGLVQQP 229
           +SDD+ K  S ++ A P   + PN+  P L++QP
Sbjct: 223 KSDDKSKMASLFNHAFPPFAAFPNMPPPFLMRQP 256


>Z81044-11|CAB02809.2|  476|Caenorhabditis elegans Hypothetical
           protein C30H6.4 protein.
          Length = 476

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = -3

Query: 327 SDDEKKRKSKWDQAAPNIGSKPNIKQPGLVQQ---PLTTNITGTKGTVI 190
           SDD      K+D    NIG+K   K+ GLV +   P TT  T T  T I
Sbjct: 225 SDDGSNVICKYDPNTLNIGAKYEWKKCGLVPETTKPTTTTPTTTTTTTI 273


>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -3

Query: 357  FIXGVAKKPESDDEKKRK 304
            FI G +KKP++DDEK R+
Sbjct: 1406 FIHGSSKKPKNDDEKIRR 1423


>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -3

Query: 357  FIXGVAKKPESDDEKKRK 304
            FI G +KKP++DDEK R+
Sbjct: 1406 FIHGSSKKPKNDDEKIRR 1423


>AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical
           protein Y106G6D.7 protein.
          Length = 948

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 330 ESDDEKKRKSKWDQAAP 280
           E DD+K R+S+W+  +P
Sbjct: 546 EDDDKKSRRSRWENTSP 562


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,057,982
Number of Sequences: 27780
Number of extensions: 105556
Number of successful extensions: 371
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)