BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS313F12f (521 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos... 28 0.97 SPBC336.10c |tif512||translation initiation factor|Schizosacchar... 27 1.7 SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr... 25 5.2 SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar... 25 5.2 SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 25 6.8 SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch... 25 9.0 SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo... 25 9.0 >SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizosaccharomyces pombe|chr 1|||Manual Length = 157 Score = 27.9 bits (59), Expect = 0.97 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = -3 Query: 288 RDIIFSVISNNGREKNVTCRSIPSA 214 RD+I +V+S G E + CR PS+ Sbjct: 133 RDLIITVVSAMGEETALACRDAPSS 157 >SPBC336.10c |tif512||translation initiation factor|Schizosaccharomyces pombe|chr 2|||Manual Length = 157 Score = 27.1 bits (57), Expect = 1.7 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = -3 Query: 288 RDIIFSVISNNGREKNVTCRSIPSA 214 +D+I +V+S G E + CR PSA Sbjct: 133 KDLIITVVSAMGEEIALACRDAPSA 157 >SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr 2|||Manual Length = 877 Score = 25.4 bits (53), Expect = 5.2 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 4/52 (7%) Frame = -3 Query: 435 ILHYNKNCHNKESPIV*LIQS----PLTKYFLTYALTTIFLLYLVDLMLHHI 292 ++ Y H + +IQ+ P TK + L ++F+LYLV H+ Sbjct: 268 LMGYKSRVHTNAATYRVIIQTLQNLPHTKVDAAFGLVSLFILYLVRYTCQHL 319 >SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 787 Score = 25.4 bits (53), Expect = 5.2 Identities = 11/37 (29%), Positives = 20/37 (54%) Frame = -3 Query: 381 IQSPLTKYFLTYALTTIFLLYLVDLMLHHIERDIIFS 271 + + + +FL+ L +FLL+ D +H D IF+ Sbjct: 433 LSNRMESFFLSETLKYLFLLFDDDNPIHRSHHDFIFT 469 >SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccharomyces pombe|chr 1|||Manual Length = 925 Score = 25.0 bits (52), Expect = 6.8 Identities = 10/16 (62%), Positives = 14/16 (87%) Frame = +3 Query: 105 RTGLKVLQVLLKSRQD 152 RTGL+V++V KSR+D Sbjct: 464 RTGLRVVRVAAKSRED 479 >SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr mitochondrial|||Manual Length = 257 Score = 24.6 bits (51), Expect = 9.0 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%) Frame = +3 Query: 9 SPFPIAYQLFIIKLFNNPLYKI--GSVRTLKLF*RTGLKV 122 S FP + LF++ LF+N L I G T +L GL + Sbjct: 92 SYFPFIWSLFVLILFSNLLRLIPYGYATTAQLIFTLGLSI 131 >SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharomyces pombe|chr 1|||Manual Length = 672 Score = 24.6 bits (51), Expect = 9.0 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = +1 Query: 148 KTTYFSVFRFLKTKNVNYA 204 K+ F +F FLK KNV Y+ Sbjct: 293 KSKLFLIFLFLKNKNVYYS 311 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,920,188 Number of Sequences: 5004 Number of extensions: 34502 Number of successful extensions: 59 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 59 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 59 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 212331630 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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