Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313F12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos...    28   0.97 
SPBC336.10c |tif512||translation initiation factor|Schizosacchar...    27   1.7  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    25   5.2  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    25   5.2  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    25   6.8  
SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch...    25   9.0  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    25   9.0  

>SPAC26H5.10c |tif51||translation initiation factor
           eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 288 RDIIFSVISNNGREKNVTCRSIPSA 214
           RD+I +V+S  G E  + CR  PS+
Sbjct: 133 RDLIITVVSAMGEETALACRDAPSS 157


>SPBC336.10c |tif512||translation initiation
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 288 RDIIFSVISNNGREKNVTCRSIPSA 214
           +D+I +V+S  G E  + CR  PSA
Sbjct: 133 KDLIITVVSAMGEEIALACRDAPSA 157


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = -3

Query: 435 ILHYNKNCHNKESPIV*LIQS----PLTKYFLTYALTTIFLLYLVDLMLHHI 292
           ++ Y    H   +    +IQ+    P TK    + L ++F+LYLV     H+
Sbjct: 268 LMGYKSRVHTNAATYRVIIQTLQNLPHTKVDAAFGLVSLFILYLVRYTCQHL 319


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 381 IQSPLTKYFLTYALTTIFLLYLVDLMLHHIERDIIFS 271
           + + +  +FL+  L  +FLL+  D  +H    D IF+
Sbjct: 433 LSNRMESFFLSETLKYLFLLFDDDNPIHRSHHDFIFT 469


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +3

Query: 105 RTGLKVLQVLLKSRQD 152
           RTGL+V++V  KSR+D
Sbjct: 464 RTGLRVVRVAAKSRED 479


>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 257

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 9   SPFPIAYQLFIIKLFNNPLYKI--GSVRTLKLF*RTGLKV 122
           S FP  + LF++ LF+N L  I  G   T +L    GL +
Sbjct: 92  SYFPFIWSLFVLILFSNLLRLIPYGYATTAQLIFTLGLSI 131


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 148 KTTYFSVFRFLKTKNVNYA 204
           K+  F +F FLK KNV Y+
Sbjct: 293 KSKLFLIFLFLKNKNVYYS 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,920,188
Number of Sequences: 5004
Number of extensions: 34502
Number of successful extensions: 59
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)