Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313F12f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,874...    29   1.7  
03_05_0621 - 26198985-26199020,26199539-26199652,26200260-262006...    28   4.0  
12_02_0390 - 18510095-18510148,18510318-18512450,18513018-185136...    27   9.1  

>03_02_0473 +
           8745721-8745994,8746083-8746090,8746232-8746324,
           8746665-8746893,8747314-8747420,8747560-8747622,
           8747883-8747983,8748996-8749090,8749330-8749350,
           8749987-8750082,8750188-8750308,8750415-8750570,
           8750679-8750869,8751207-8751478,8751853-8751954,
           8752006-8752038,8752132-8752308,8752397-8752466,
           8752512-8752585,8752667-8752908,8752983-8753129,
           8753526-8753751,8753893-8753970,8754378-8754521,
           8754829-8755008,8755335-8755394,8755484-8755523,
           8758653-8759137
          Length = 1294

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = -2

Query: 415 LSQQGIANSLAYTIAAYEILLNLRSY-NNILTLFSRLNVTS 296
           + + G + + AY++ AY+   NL+SY +N+ +L S LN  S
Sbjct: 475 VQEMGKSRAAAYSLGAYDEAANLQSYSDNVESLDSDLNENS 515


>03_05_0621 -
           26198985-26199020,26199539-26199652,26200260-26200623,
           26201232-26201527
          Length = 269

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -3

Query: 201 IINVFSFQKSEHGKISCLGVTS 136
           ++N+ + Q S  G+ISCLG++S
Sbjct: 222 VLNLGNLQNSHEGRISCLGLSS 243


>12_02_0390 -
           18510095-18510148,18510318-18512450,18513018-18513681,
           18514089-18514202,18514835-18514979,18515274-18515331
          Length = 1055

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 303 LHHIERDIIFSVISNNGREKN 241
           +H + RD+   ++SN GR+KN
Sbjct: 584 MHDVIRDMALWIVSNEGRDKN 604


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,555,370
Number of Sequences: 37544
Number of extensions: 184219
Number of successful extensions: 271
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)