Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313F12f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49160| Best HMM Match : IBR (HMM E-Value=2.5e-15) 28 5.4
SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045) 27 9.4
SB_17217| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_12571| Best HMM Match : SBF (HMM E-Value=1.6e-37) 27 9.4
SB_11176| Best HMM Match : PTS_EIIB (HMM E-Value=4.4) 27 9.4
SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_55621| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_50326| Best HMM Match : Ribosomal_L29 (HMM E-Value=3.4) 27 9.4
SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40) 27 9.4
SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_10526| Best HMM Match : CUE (HMM E-Value=6.5) 27 9.4
SB_8748| Best HMM Match : Astacin (HMM E-Value=0) 27 9.4
SB_5500| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_4159| Best HMM Match : Vpu (HMM E-Value=2) 27 9.4
SB_3002| Best HMM Match : Pkinase (HMM E-Value=4.1e-17) 27 9.4
>SB_49160| Best HMM Match : IBR (HMM E-Value=2.5e-15)
Length = 582
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -3
Query: 159 ISCLGVTSITLAELSSQFVRI 97
+SCL +TS+ L EL+ Q VRI
Sbjct: 218 LSCLWLTSLQLQELAKQLVRI 238
>SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 408
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -2
Query: 520 NTTHYRANW 494
NTTHYRANW
Sbjct: 16 NTTHYRANW 24
>SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 287
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -2
Query: 520 NTTHYRANW 494
NTTHYRANW
Sbjct: 72 NTTHYRANW 80
>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
Length = 2506
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -2
Query: 520 NTTHYRANW 494
NTTHYRANW
Sbjct: 640 NTTHYRANW 648
>SB_17217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 63
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -2
Query: 520 NTTHYRANW 494
NTTHYRANW
Sbjct: 51 NTTHYRANW 59
>SB_12571| Best HMM Match : SBF (HMM E-Value=1.6e-37)
Length = 257
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -2
Query: 520 NTTHYRANW 494
NTTHYRANW
Sbjct: 13 NTTHYRANW 21
>SB_11176| Best HMM Match : PTS_EIIB (HMM E-Value=4.4)
Length = 117
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -2
Query: 520 NTTHYRANW 494
NTTHYRANW
Sbjct: 53 NTTHYRANW 61
>SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1907
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -2
Query: 520 NTTHYRANW 494
NTTHYRANW
Sbjct: 1891 NTTHYRANW 1899
>SB_55621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 206
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -2
Query: 520 NTTHYRANW 494
NTTHYRANW
Sbjct: 51 NTTHYRANW 59
>SB_50326| Best HMM Match : Ribosomal_L29 (HMM E-Value=3.4)
Length = 131
Score = 27.1 bits (57), Expect = 9.4
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Frame = -3
Query: 339 TTIFLLYLVDLMLHHIERDI-IFSVISNNGREKNVTCRSIPSA*LTCIINVFSFQ--KSE 169
+T+ YLV +M + ERDI + + ++ V C A T ++V + Q K +
Sbjct: 17 STLISFYLVSIMWRNKERDIKVKEIKVKRDKDVLVLCIDAKLARKTFYLDVKTSQKLKID 76
Query: 168 HGKISCLGV--TSITLAELSSQFVRIT 94
K L V TSI + +S F+R++
Sbjct: 77 AAKRDILTVARTSIDVRIISDLFIRVS 103
>SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -2
Query: 520 NTTHYRANW 494
NTTHYRANW
Sbjct: 13 NTTHYRANW 21
>SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40)
Length = 768
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -2
Query: 520 NTTHYRANW 494
NTTHYRANW
Sbjct: 45 NTTHYRANW 53
>SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 602
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -2
Query: 520 NTTHYRANW 494
NTTHYRANW
Sbjct: 94 NTTHYRANW 102
>SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -2
Query: 520 NTTHYRANW 494
NTTHYRANW
Sbjct: 72 NTTHYRANW 80
>SB_10526| Best HMM Match : CUE (HMM E-Value=6.5)
Length = 281
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -2
Query: 520 NTTHYRANW 494
NTTHYRANW
Sbjct: 83 NTTHYRANW 91
>SB_8748| Best HMM Match : Astacin (HMM E-Value=0)
Length = 757
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -3
Query: 189 FSFQKSEHGKISCLG 145
F+FQK EHGK+ LG
Sbjct: 185 FNFQKYEHGKVDTLG 199
>SB_5500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -2
Query: 520 NTTHYRANW 494
NTTHYRANW
Sbjct: 59 NTTHYRANW 67
>SB_4159| Best HMM Match : Vpu (HMM E-Value=2)
Length = 779
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -2
Query: 520 NTTHYRANW 494
NTTHYRANW
Sbjct: 83 NTTHYRANW 91
>SB_3002| Best HMM Match : Pkinase (HMM E-Value=4.1e-17)
Length = 683
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -2
Query: 418 KLSQQGIANSLAYTIAAYEILLNLRSYNNILTL 320
KLS QG ++ +A T ILL+L+ + NI+ L
Sbjct: 550 KLSDQGGSDIIATTRDEVNILLSLQGHKNIIRL 582
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,977,559
Number of Sequences: 59808
Number of extensions: 238325
Number of successful extensions: 1950
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1950
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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