Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313F12f
         (521 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY553322-1|AAT36323.1|  426|Anopheles gambiae G-protein coupled ...    24   2.7  
AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    23   4.7  
AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    23   4.7  
AJ970250-1|CAI96722.1|  132|Anopheles gambiae putative reverse t...    23   6.2  

>AY553322-1|AAT36323.1|  426|Anopheles gambiae G-protein coupled
           receptor 4 protein.
          Length = 426

 Score = 24.2 bits (50), Expect = 2.7
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 348 YALTTIFLLYLVDLMLHHIERDIIFSVISNNGREKNVT 235
           Y L  +  +Y + LM+      +I   ISN  REK  +
Sbjct: 243 YNLFCVIAMYFLPLMIISGAYTVILCEISNRSREKETS 280


>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 153 CLGVTSITLAELSSQFVRIT*EFEQNLS 70
           C G++  T A   S F R+T   EQN+S
Sbjct: 392 CSGISGSTTAIGGSVFTRLTTVEEQNVS 419


>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 153 CLGVTSITLAELSSQFVRIT*EFEQNLS 70
           C G++  T A   S F R+T   EQN+S
Sbjct: 392 CSGISGSTTAIGGSVFTRLTTVEEQNVS 419


>AJ970250-1|CAI96722.1|  132|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 132

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 161 FPCSDF*KLKTLIMQVSYALGIERHVT 241
           FPCS    LK+ ++  +Y + I++H++
Sbjct: 93  FPCSLVQWLKSYLINRTYIVKIDKHMS 119


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 469,724
Number of Sequences: 2352
Number of extensions: 7942
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 47783067
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)