Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313F12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.4  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   4.4  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.4  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   5.8  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 324 LYLVDLMLHHIERDII 277
           LYL D+ LH   RD++
Sbjct: 328 LYLSDIPLHDATRDLV 343


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 159 ISCLGVTSITLAELS 115
           I+C G+TS+T+ E S
Sbjct: 13  IACQGITSVTVRENS 27


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 324 LYLVDLMLHHIERDII 277
           LYL D+ LH   RD++
Sbjct: 328 LYLSDIPLHDATRDLV 343


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 324 LYLVDLMLHHIERDIIFS 271
           LY+ DL +H   RD++ +
Sbjct: 338 LYINDLSMHDFSRDLMLA 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,555
Number of Sequences: 438
Number of extensions: 2290
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)