Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313F08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar...    28   0.73 
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    25   6.8  
SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos...    25   9.0  

>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 232

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -3

Query: 456 EKNNSVHSFGFSF*GVSRIAEGRSHIHTSLV*YQPVSQ 343
           E NNS+H+F F    V    +GR  +H   +   PVSQ
Sbjct: 52  ELNNSLHNFDFKIKRVQDQLDGRLTLHFQNLSGDPVSQ 89


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 164 RWREYGDGFLVLKFTSCHHSF-SFEYTYEKP 253
           R++    GF   +F SC+HSF + ++++E P
Sbjct: 368 RFKSSTGGFF-FEFLSCYHSFLALQFSFELP 397


>SPCC1235.12c |mug146||meiotically upregulated gene
           Mug46|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = -3

Query: 408 SRIAEGRSHIHTSLV*YQPVSQ*QLLFLNKNHERLSKVLLVITHKVTKQKN 256
           +++ + R H + +L    P  +    F N+N  RLS+V   +TH ++  +N
Sbjct: 13  TQVRKERVHTYRTLTSATPSLE---FFSNENTNRLSEVQCKLTHFLSSSEN 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,989,591
Number of Sequences: 5004
Number of extensions: 38435
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)