BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS313F08f (521 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g24790.1 68417.m03550 expressed protein ; expression supporte... 29 1.9 At3g03810.1 68416.m00391 expressed protein contains Pfam PF03138... 27 7.7 >At4g24790.1 68417.m03550 expressed protein ; expression supported by MPSS Length = 815 Score = 29.1 bits (62), Expect = 1.9 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 1/81 (1%) Frame = +3 Query: 18 TEKNYKLIASQSEKRLINF-DLS**SATS*INSECSDKMRSVSLSKRMVSDGENTVMDFW 194 T YKLI S+ L++ DL+ S TS + MRS +++S N +MD Sbjct: 469 TSLAYKLIGVVSDDELLDLLDLAMSSDTSNTVIRARELMRSKIDPMQLISQLANVIMDII 528 Query: 195 C*NLHRVIIASVLNTLTRNHS 257 N A+ L LTR+ S Sbjct: 529 AGNSQESSSATRLRFLTRHTS 549 >At3g03810.1 68416.m00391 expressed protein contains Pfam PF03138: Plant protein family. The function of this family of plant proteins is unknown; previously annotated as 'auxin-independent growth promoter protein -related' based on similarity to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana tabacum], which, due to scienitific fraud was retracted. Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908. PMID:10400497. Length = 656 Score = 27.1 bits (57), Expect = 7.7 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = +2 Query: 227 SFEYTYEKPQFFCFVTLCVITSKTL 301 SF Y Y++ QF F+ VI KTL Sbjct: 142 SFSYLYDEEQFIAFLKNDVIVMKTL 166 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,847,488 Number of Sequences: 28952 Number of extensions: 181982 Number of successful extensions: 406 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 399 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 406 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 957410176 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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