Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313F08f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24790.1 68417.m03550 expressed protein ; expression supporte...    29   1.9  
At3g03810.1 68416.m00391 expressed protein contains Pfam PF03138...    27   7.7  

>At4g24790.1 68417.m03550 expressed protein ; expression supported
           by MPSS
          Length = 815

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = +3

Query: 18  TEKNYKLIASQSEKRLINF-DLS**SATS*INSECSDKMRSVSLSKRMVSDGENTVMDFW 194
           T   YKLI   S+  L++  DL+  S TS       + MRS     +++S   N +MD  
Sbjct: 469 TSLAYKLIGVVSDDELLDLLDLAMSSDTSNTVIRARELMRSKIDPMQLISQLANVIMDII 528

Query: 195 C*NLHRVIIASVLNTLTRNHS 257
             N      A+ L  LTR+ S
Sbjct: 529 AGNSQESSSATRLRFLTRHTS 549


>At3g03810.1 68416.m00391 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown;  previously annotated as
           'auxin-independent growth promoter protein -related'
           based on similarity to axi 1 protein (GB:X80301)
           (GI:559920) from [Nicotiana tabacum], which, due to
           scienitific fraud was retracted. Retraction in: Schell
           J. EMBO J 1999 May 17;18(10):2908. PMID:10400497.
          Length = 656

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 227 SFEYTYEKPQFFCFVTLCVITSKTL 301
           SF Y Y++ QF  F+   VI  KTL
Sbjct: 142 SFSYLYDEEQFIAFLKNDVIVMKTL 166


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,847,488
Number of Sequences: 28952
Number of extensions: 181982
Number of successful extensions: 406
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)