Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313F03f
         (466 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.11 
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ...    25   4.3  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   4.3  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 30.7 bits (66), Expect = 0.11
 Identities = 15/28 (53%), Positives = 15/28 (53%)
 Frame = -2

Query: 459 GFSGFFPQGKGPPPHPNGSIFXGXKGFG 376
           GF GF     GPPP P G  F G  GFG
Sbjct: 189 GFGGFGGGSGGPPPGPGG--FGGFGGFG 214


>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = -2

Query: 429 GPPPHPNGSIFXGXKGFGPPXKNSXQRPLXNF 334
           GPPP P   +F      GP  K S      NF
Sbjct: 216 GPPPQPGDIVFSNPMLGGPDHKVSQPSETENF 247


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = -3

Query: 425  PPPTPMVQFXXGKRXLAPRXKIAPKGP 345
            PPP PM     G    AP   + P GP
Sbjct: 1883 PPPPPMALPKAGPPSAAPTSALPPAGP 1909


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,449,159
Number of Sequences: 5004
Number of extensions: 23037
Number of successful extensions: 33
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)