Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313F03f
         (466 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0239 + 42222024-42222133,42222220-42222301,42222396-422224...    29   2.4  
11_06_0543 + 24792110-24792229,24792316-24792521,24793770-247944...    28   4.3  
09_01_0165 - 2436769-2437442,2438159-2438224,2438318-2438415,243...    27   9.8  

>01_07_0239 +
           42222024-42222133,42222220-42222301,42222396-42222486,
           42222702-42222814,42222912-42222984,42223080-42223178,
           42223201-42223406,42223693-42223832,42223912-42223969,
           42224067-42224137,42224207-42224741
          Length = 525

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
 Frame = -2

Query: 453 SGFFPQ-GKGPPPHPNGSI 400
           SG +PQ G+GPPP+P G +
Sbjct: 454 SGPYPQQGRGPPPYPGGGM 472


>11_06_0543 +
           24792110-24792229,24792316-24792521,24793770-24794462,
           24794538-24794717,24794793-24795084,24795166-24795375
          Length = 566

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 375 PPXKNSXQRPLXNFGEPWERVPLEPLDWXXR 283
           PP K + + PL N  EP  +VP+E  D   R
Sbjct: 163 PPLKKTKKTPLPNRSEPSLKVPVEVQDHFIR 193


>09_01_0165 -
           2436769-2437442,2438159-2438224,2438318-2438415,
           2439856-2440214
          Length = 398

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
 Frame = -2

Query: 462 PGFSGFFPQGKGPPPHPNGSIFXGXKGF--GPPXKNSXQRPLXNFGEP 325
           PG+ G   + +GPPP P  +      G+  G P  +    P    G P
Sbjct: 301 PGYQGGNQEYRGPPPPPPSAYQGNNPGYQGGGPGYHGGNPPPYQAGNP 348


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,275,132
Number of Sequences: 37544
Number of extensions: 197464
Number of successful extensions: 507
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)