Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313F03f
         (466 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4771| Best HMM Match : DEAD (HMM E-Value=0.015)                     29   1.9  
SB_17864| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_13178| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.8  
SB_31478| Best HMM Match : Extensin_2 (HMM E-Value=1.3)                27   7.7  
SB_5388| Best HMM Match : PH (HMM E-Value=2.5e-08)                     27   7.7  

>SB_4771| Best HMM Match : DEAD (HMM E-Value=0.015)
          Length = 592

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 16/46 (34%), Positives = 19/46 (41%)
 Frame = -2

Query: 441 PQGKGPPPHPNGSIFXGXKGFGPPXKNSXQRPLXNFGEPWERVPLE 304
           P   GPPPH N           PP  N    P  N   P +R+PL+
Sbjct: 77  PNNMGPPPHVNQGPPPNSANQAPP-PNPGPSPSFNSQGPPQRLPLQ 121


>SB_17864| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 911

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 453 SGFFPQGKGPPPHPNGSIFXGXKGFGPPXKNS 358
           +G +P G+ PPP P      G  G+GPP   S
Sbjct: 633 AGGYPTGQHPPPPP-----AGYPGYGPPPAGS 659


>SB_13178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -2

Query: 462 PGFSGFFPQGKGPPPHPNGSIFXGXKGFGPPXK 364
           P   G++P G  PPP+    +    +   PP K
Sbjct: 151 PQQPGYYPAGTAPPPYSEAGVAGTSEPLPPPPK 183


>SB_31478| Best HMM Match : Extensin_2 (HMM E-Value=1.3)
          Length = 515

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
 Frame = -2

Query: 429 GPPPHPNGSIFX--GXKGFGPPXKNSXQRPLXNFGEPWE 319
           GPP  P    +   G   FGP       RPL N G P+E
Sbjct: 190 GPPFKPGQRPYQHGGPDQFGPNGHTEEMRPLENRGPPFE 228


>SB_5388| Best HMM Match : PH (HMM E-Value=2.5e-08)
          Length = 293

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
 Frame = -2

Query: 444 FPQGKGPP-PHPNGSIFXGXKGFGP---PXKNSXQRPLXNFGEPWERVP 310
           +P   GPP PHP  S++    G+ P   P +    +P    G P +  P
Sbjct: 131 YPGAAGPPMPHPTASVYPPPGGYPPTSYPPQPYPAQPYPQQGYPPQPPP 179


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,007,391
Number of Sequences: 59808
Number of extensions: 202214
Number of successful extensions: 340
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 957531822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)