Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313F03f
         (466 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr...    28   2.9  
AL110477-13|CAB54337.2|  789|Caenorhabditis elegans Hypothetical...    28   2.9  
AF230279-1|AAG16654.1|  789|Caenorhabditis elegans SWI3-like pro...    28   2.9  
Z81098-2|CAB03182.1|  961|Caenorhabditis elegans Hypothetical pr...    27   6.6  
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
           protein F12F6.6 protein.
          Length = 1126

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = -2

Query: 462 PGFSGFFPQGKGPPPHPNGSIFXGXKGFGPP 370
           PG  G FP G+G P  P GS   G  G G P
Sbjct: 279 PGMPGAFPPGQGGPGMP-GSFPPGAPGPGGP 308


>AL110477-13|CAB54337.2|  789|Caenorhabditis elegans Hypothetical
           protein Y113G7B.23 protein.
          Length = 789

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = -2

Query: 435 GKGPPPHPNGSIFXGXKGFGPPXKNSXQRPLXNFGEPWERVPLE 304
           G+GPPP P G  + G    GPP       P   +    +R P +
Sbjct: 677 GQGPPPPPQGQQYYG----GPPPPGQPYGPPGGYPPQQQRPPYQ 716


>AF230279-1|AAG16654.1|  789|Caenorhabditis elegans SWI3-like
           protein protein.
          Length = 789

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = -2

Query: 435 GKGPPPHPNGSIFXGXKGFGPPXKNSXQRPLXNFGEPWERVPLE 304
           G+GPPP P G  + G    GPP       P   +    +R P +
Sbjct: 677 GQGPPPPPQGQQYYG----GPPPPGQPYGPPGGYPPQQQRPPYQ 716


>Z81098-2|CAB03182.1|  961|Caenorhabditis elegans Hypothetical
           protein K07A12.2 protein.
          Length = 961

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 462 PGFSGFFPQGKGPPPHPNGSIFXGXKGFGPP 370
           PGF G  P G G    PN ++    +GF  P
Sbjct: 557 PGFGGNIPVGTGASSVPNKNLNDAIEGFTGP 587


>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
           protein C01G8.9a protein.
          Length = 1724

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = -2

Query: 441 PQGK-GPP-PHPNGSIFXGXKGFGPPXKNSXQRPLXNFGEP 325
           PQG  GPP P  +   + G  G+GPP      RP   F  P
Sbjct: 714 PQGPPGPPGPQQHPGPYPGYPGYGPP---GAMRPPAGFAPP 751


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,264,052
Number of Sequences: 27780
Number of extensions: 160457
Number of successful extensions: 310
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)