Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313F03f
         (466 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07718.1 68415.m00968 cytochrome b, putative similar to Cytoc...    29   1.2  
At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa...    28   2.7  
At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa...    28   2.7  

>At2g07718.1 68415.m00968 cytochrome b, putative similar to
           Cytochrome b (Swiss-Prot:P42792) [Arabidopsis thaliana];
           similar to Cytochrome b (Swiss-Prot:P09843) [Oenothera
           bertiana]; contains 3 transmembrane domains
          Length = 313

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -2

Query: 462 PGFSGFFPQGKGPPPHPNGSIFXGXKGFGPPXKNSXQR 349
           PGFSG    G   PP+P+G  F        P  +  +R
Sbjct: 142 PGFSGGLGGGSNTPPNPSGDFFLSSYQTSDPDYHDQRR 179


>At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated
           protein B, putative / snRNP-B, putative / Sm protein B,
           putative similar to SP|Q05856 Small nuclear
           ribonucleoprotein associated protein B (snRNP-B) (Sm
           protein B) (Sm-B) (SmB) {Drosophila melanogaster}
          Length = 257

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 441 PQGKGPPPHPNGSIFXGXKGFGPPXKNSXQRPL 343
           P G+GPPP P G      +  GPP     QRP+
Sbjct: 177 PMGRGPPP-PYGMRPPPQQFSGPPPPQYGQRPM 208


>At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated
           protein B, putative / snRNP-B, putative / Sm protein B,
           putative similar to SP|Q05856 Small nuclear
           ribonucleoprotein associated protein B (snRNP-B) (Sm
           protein B) (Sm-B) (SmB) {Drosophila melanogaster}
          Length = 257

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 441 PQGKGPPPHPNGSIFXGXKGFGPPXKNSXQRPL 343
           P G+GPPP P G      +  GPP     QRP+
Sbjct: 177 PMGRGPPP-PYGMRPPPQQFSGPPPPQYGQRPM 208


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,923,022
Number of Sequences: 28952
Number of extensions: 142881
Number of successful extensions: 304
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 782033640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)