BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS313F03f (466 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g07718.1 68415.m00968 cytochrome b, putative similar to Cytoc... 29 1.2 At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa... 28 2.7 At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa... 28 2.7 >At2g07718.1 68415.m00968 cytochrome b, putative similar to Cytochrome b (Swiss-Prot:P42792) [Arabidopsis thaliana]; similar to Cytochrome b (Swiss-Prot:P09843) [Oenothera bertiana]; contains 3 transmembrane domains Length = 313 Score = 29.5 bits (63), Expect = 1.2 Identities = 13/38 (34%), Positives = 17/38 (44%) Frame = -2 Query: 462 PGFSGFFPQGKGPPPHPNGSIFXGXKGFGPPXKNSXQR 349 PGFSG G PP+P+G F P + +R Sbjct: 142 PGFSGGLGGGSNTPPNPSGDFFLSSYQTSDPDYHDQRR 179 >At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative similar to SP|Q05856 Small nuclear ribonucleoprotein associated protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB) {Drosophila melanogaster} Length = 257 Score = 28.3 bits (60), Expect = 2.7 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = -2 Query: 441 PQGKGPPPHPNGSIFXGXKGFGPPXKNSXQRPL 343 P G+GPPP P G + GPP QRP+ Sbjct: 177 PMGRGPPP-PYGMRPPPQQFSGPPPPQYGQRPM 208 >At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative similar to SP|Q05856 Small nuclear ribonucleoprotein associated protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB) {Drosophila melanogaster} Length = 257 Score = 28.3 bits (60), Expect = 2.7 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = -2 Query: 441 PQGKGPPPHPNGSIFXGXKGFGPPXKNSXQRPL 343 P G+GPPP P G + GPP QRP+ Sbjct: 177 PMGRGPPP-PYGMRPPPQQFSGPPPPQYGQRPM 208 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 7,923,022 Number of Sequences: 28952 Number of extensions: 142881 Number of successful extensions: 304 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 270 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 302 length of database: 12,070,560 effective HSP length: 75 effective length of database: 9,899,160 effective search space used: 782033640 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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