Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313F02f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    25   0.54 
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    25   0.54 
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    25   0.54 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    25   0.54 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    24   0.94 
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    24   0.94 
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    24   0.94 
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    24   0.94 
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   5.0  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    21   8.7  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    21   8.7  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    21   8.7  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   8.7  

>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 24.6 bits (51), Expect = 0.54
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
 Frame = -2

Query: 382 SLGSKSGRLHPLKSQRRPDVQM--YFILSWTIRALTHSFSS-LVSRDTRSMQRCRQ*FLA 212
           +LG+  GR+HP+ S      QM  Y +  W  +A  H     L S    S+ R +     
Sbjct: 183 TLGAACGRIHPIGSGGMVWYQMFEYAVGHWMQKATEHVIGCVLCSPGCFSLFRGKALMDK 242

Query: 211 LNQSSSTPRSAGSRHEKKY 155
                 T RS  ++H  +Y
Sbjct: 243 SVMKKYTTRSTQAKHYVQY 261


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 24.6 bits (51), Expect = 0.54
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
 Frame = -2

Query: 382 SLGSKSGRLHPLKSQRRPDVQM--YFILSWTIRALTHSFSS-LVSRDTRSMQRCRQ*FLA 212
           +LG+  GR+HP+ S      QM  Y +  W  +A  H     L S    S+ R +     
Sbjct: 497 TLGAACGRIHPIGSGGMVWYQMFEYAVGHWMQKATEHVIGCVLCSPGCFSLFRGKALMDK 556

Query: 211 LNQSSSTPRSAGSRHEKKY 155
                 T RS  ++H  +Y
Sbjct: 557 SVMKKYTTRSTQAKHYVQY 575


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 24.6 bits (51), Expect = 0.54
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
 Frame = -2

Query: 382 SLGSKSGRLHPLKSQRRPDVQM--YFILSWTIRALTHSFSS-LVSRDTRSMQRCRQ*FLA 212
           +LG+  GR+HP+ S      QM  Y +  W  +A  H     L S    S+ R +     
Sbjct: 730 TLGAACGRIHPIGSGGMVWYQMFEYAVGHWMQKATEHVIGCVLCSPGCFSLFRGKALMDK 789

Query: 211 LNQSSSTPRSAGSRHEKKY 155
                 T RS  ++H  +Y
Sbjct: 790 SVMKKYTTRSTQAKHYVQY 808


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 24.6 bits (51), Expect = 0.54
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
 Frame = -2

Query: 382 SLGSKSGRLHPLKSQRRPDVQM--YFILSWTIRALTHSFSS-LVSRDTRSMQRCRQ*FLA 212
           +LG+  GR+HP+ S      QM  Y +  W  +A  H     L S    S+ R +     
Sbjct: 730 TLGAACGRIHPIGSGGMVWYQMFEYAVGHWMQKATEHVIGCVLCSPGCFSLFRGKALMDK 789

Query: 211 LNQSSSTPRSAGSRHEKKY 155
                 T RS  ++H  +Y
Sbjct: 790 SVMKKYTTRSTQAKHYVQY 808


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.8 bits (49), Expect = 0.94
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -2

Query: 382 SLGSKSGRLHPLKSQRRPDVQM--YFILSWTIRALTH 278
           +LG+  GR+HP+ S      QM  Y I  W  +A  H
Sbjct: 757 NLGAACGRIHPVGSGPMVWYQMFEYAIGHWLQKATEH 793


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.8 bits (49), Expect = 0.94
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -2

Query: 382 SLGSKSGRLHPLKSQRRPDVQM--YFILSWTIRALTH 278
           +LG+  GR+HP+ S      QM  Y I  W  +A  H
Sbjct: 757 NLGAACGRIHPVGSGPMVWYQMFEYAIGHWLQKATEH 793


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.8 bits (49), Expect = 0.94
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -2

Query: 382 SLGSKSGRLHPLKSQRRPDVQM--YFILSWTIRALTH 278
           +LG+  GR+HP+ S      QM  Y I  W  +A  H
Sbjct: 757 NLGAACGRIHPVGSGPMVWYQMFEYAIGHWLQKATEH 793


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.8 bits (49), Expect = 0.94
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -2

Query: 382 SLGSKSGRLHPLKSQRRPDVQM--YFILSWTIRALTH 278
           +LG+  GR+HP+ S      QM  Y I  W  +A  H
Sbjct: 757 NLGAACGRIHPVGSGPMVWYQMFEYAIGHWLQKATEH 793


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 7/29 (24%), Positives = 14/29 (48%)
 Frame = +3

Query: 138 YADNKGYFFSWRDPALRGVEEDWLSARNY 224
           YA     +  + DP    ++ DW+ ++ Y
Sbjct: 335 YAYKGNQWVGYEDPESVQIKMDWIKSKGY 363


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 431 GGSQLLQLSSPEP 393
           GGSQ+L   +P+P
Sbjct: 310 GGSQILTYKNPKP 322


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 431 GGSQLLQLSSPEP 393
           GGSQ+L   +P+P
Sbjct: 311 GGSQILTYKNPKP 323


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 431 GGSQLLQLSSPEP 393
           GGSQ+L   +P+P
Sbjct: 311 GGSQILTYKNPKP 323


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -3

Query: 375 VVSQVGCIL*SHKDGPM 325
           +VS +GC+     +GP+
Sbjct: 513 IVSLIGCVTEGRAEGPL 529


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,136
Number of Sequences: 336
Number of extensions: 3150
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)