BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS313F02f (521 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 05_05_0290 - 23879064-23880035 31 0.42 03_01_0522 - 3919120-3919696,3919835-3919919,3919955-3919985,392... 31 0.74 03_05_0858 + 28309266-28311143 27 6.9 01_01_0078 + 587975-588179,588506-588606,589087-589167,589240-59... 27 6.9 >05_05_0290 - 23879064-23880035 Length = 323 Score = 31.5 bits (68), Expect = 0.42 Identities = 24/87 (27%), Positives = 35/87 (40%) Frame = +3 Query: 204 WLSARNYCRQRCMDLVSLETSDENEWVKARIVQDKIKYIWTSGRLCDFKGCNRPDLLPNE 383 WL + C +L S ET D NE V+D + + G + NRP + Sbjct: 229 WLELHSSCPVCRFELPSEETKDLNEPSNIGRVEDSHEEVRADGPGNVSESSNRPWAIVPW 288 Query: 384 INGWFWTAELQKLAPTTNRQQNDWSEG 464 +N F T E Q + QQ+ + G Sbjct: 289 LNELFSTREAQNAGGVSTDQQSPHTSG 315 >03_01_0522 - 3919120-3919696,3919835-3919919,3919955-3919985, 3920078-3920158,3920271-3920338,3920645-3920698, 3921023-3922379 Length = 750 Score = 30.7 bits (66), Expect = 0.74 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = -2 Query: 514 PPCISSRLSGCGFPMPPPSDQSFC 443 PP S + S CG +PP S Q FC Sbjct: 615 PPRPSQQFSACGTMLPPSSSQPFC 638 >03_05_0858 + 28309266-28311143 Length = 625 Score = 27.5 bits (58), Expect = 6.9 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%) Frame = +3 Query: 345 FKGCNRPDLLPNEIN-GWFWTAELQKLAPTTNRQQNDWSEGGGIGKPQPDNRELIQ 509 F GC+R ++ I G W A LQ LA + G+G PQPD + +Q Sbjct: 338 FAGCHRVHVVDFGIKQGMQWPALLQALALRPGGPPS--FRLTGVGPPQPDETDALQ 391 >01_01_0078 + 587975-588179,588506-588606,589087-589167,589240-590178, 590388-590542,590837-590902,590963-591023,591659-591853, 591939-592049,592116-592280 Length = 692 Score = 27.5 bits (58), Expect = 6.9 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%) Frame = -2 Query: 280 HSFSSLVSRDTRSMQRCRQ*FLALNQS-SSTPRSAGSRH-EKKYPLLSA 140 H+FSSLVS T + + +++Q+ SST S+ S H + PLL++ Sbjct: 326 HNFSSLVSNKTADIPGSTLAYQSVSQAVSSTVASSSSAHMDMPVPLLAS 374 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,524,554 Number of Sequences: 37544 Number of extensions: 396764 Number of successful extensions: 1338 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 1288 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1337 length of database: 14,793,348 effective HSP length: 77 effective length of database: 11,902,460 effective search space used: 1142636160 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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