Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313F02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0290 - 23879064-23880035                                         31   0.42 
03_01_0522 - 3919120-3919696,3919835-3919919,3919955-3919985,392...    31   0.74 
03_05_0858 + 28309266-28311143                                         27   6.9  
01_01_0078 + 587975-588179,588506-588606,589087-589167,589240-59...    27   6.9  

>05_05_0290 - 23879064-23880035
          Length = 323

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 24/87 (27%), Positives = 35/87 (40%)
 Frame = +3

Query: 204 WLSARNYCRQRCMDLVSLETSDENEWVKARIVQDKIKYIWTSGRLCDFKGCNRPDLLPNE 383
           WL   + C     +L S ET D NE      V+D  + +   G     +  NRP  +   
Sbjct: 229 WLELHSSCPVCRFELPSEETKDLNEPSNIGRVEDSHEEVRADGPGNVSESSNRPWAIVPW 288

Query: 384 INGWFWTAELQKLAPTTNRQQNDWSEG 464
           +N  F T E Q     +  QQ+  + G
Sbjct: 289 LNELFSTREAQNAGGVSTDQQSPHTSG 315


>03_01_0522 -
           3919120-3919696,3919835-3919919,3919955-3919985,
           3920078-3920158,3920271-3920338,3920645-3920698,
           3921023-3922379
          Length = 750

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 514 PPCISSRLSGCGFPMPPPSDQSFC 443
           PP  S + S CG  +PP S Q FC
Sbjct: 615 PPRPSQQFSACGTMLPPSSSQPFC 638


>03_05_0858 + 28309266-28311143
          Length = 625

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +3

Query: 345 FKGCNRPDLLPNEIN-GWFWTAELQKLAPTTNRQQNDWSEGGGIGKPQPDNRELIQ 509
           F GC+R  ++   I  G  W A LQ LA       +      G+G PQPD  + +Q
Sbjct: 338 FAGCHRVHVVDFGIKQGMQWPALLQALALRPGGPPS--FRLTGVGPPQPDETDALQ 391


>01_01_0078 +
           587975-588179,588506-588606,589087-589167,589240-590178,
           590388-590542,590837-590902,590963-591023,591659-591853,
           591939-592049,592116-592280
          Length = 692

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = -2

Query: 280 HSFSSLVSRDTRSMQRCRQ*FLALNQS-SSTPRSAGSRH-EKKYPLLSA 140
           H+FSSLVS  T  +      + +++Q+ SST  S+ S H +   PLL++
Sbjct: 326 HNFSSLVSNKTADIPGSTLAYQSVSQAVSSTVASSSSAHMDMPVPLLAS 374


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,524,554
Number of Sequences: 37544
Number of extensions: 396764
Number of successful extensions: 1338
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1337
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)