Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313F02f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.007
SB_56031| Best HMM Match : Lectin_C (HMM E-Value=3.3e-08)              33   0.14 
SB_49294| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.14 
SB_24471| Best HMM Match : Lectin_C (HMM E-Value=2.7e-12)              33   0.14 
SB_38168| Best HMM Match : Lectin_C (HMM E-Value=7.9e-06)              32   0.25 
SB_4966| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.58 
SB_58330| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.76 
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   1.8  
SB_16280| Best HMM Match : PA14 (HMM E-Value=0.00074)                  29   2.3  
SB_13654| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_18120| Best HMM Match : Colipase_C (HMM E-Value=0.87)               27   7.1  
SB_33276| Best HMM Match : Glyco_transf_43 (HMM E-Value=0)             27   7.1  
SB_2584| Best HMM Match : SPRY (HMM E-Value=0.014)                     27   7.1  
SB_1697| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.1  
SB_48103| Best HMM Match : Lectin_C (HMM E-Value=5.2e-36)              27   9.4  
SB_39157| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_42227| Best HMM Match : SDA1 (HMM E-Value=0.66)                     27   9.4  
SB_8855| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  

>SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2516

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 27/85 (31%), Positives = 44/85 (51%)
 Frame = +3

Query: 204  WLSARNYCRQRCMDLVSLETSDENEWVKARIVQDKIKYIWTSGRLCDFKGCNRPDLLPNE 383
            W+ AR++CR+   DLVSL T++EN +V + I      Y WT      + G N  DL    
Sbjct: 1465 WMEARDFCRKSRGDLVSLRTANENAFVFSEI--KTRYYYWTV-----WIGLN--DLGTEG 1515

Query: 384  INGWFWTAELQKLAPTTNRQQNDWS 458
            +N W   + +  +    N++ N+W+
Sbjct: 1516 VNTWSDGSPMSYI-NWGNKEPNNWN 1539


>SB_56031| Best HMM Match : Lectin_C (HMM E-Value=3.3e-08)
          Length = 129

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +3

Query: 144 DNKGYFFSWRDPALRGVEEDWLSARNYCRQRCMDLVSLETSDENEWVKA 290
           D+  ++F  +   L  VEE W +A   CR R   LV +    ENE++++
Sbjct: 3   DSSWHYFDGKCYFLSTVEEPWTAAERSCRVRGSTLVIVNNLMENEFIRS 51


>SB_49294| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +3

Query: 144 DNKGYFFSWRDPALRGVEEDWLSARNYCRQRCMDLVSLETSDENEWVKA 290
           D+  ++F  +   L  VEE W +A   CR R   LV +    ENE++++
Sbjct: 60  DSSWHYFDGKCYFLSTVEEPWTAAERSCRVRGSTLVIVNNLMENEFIRS 108


>SB_24471| Best HMM Match : Lectin_C (HMM E-Value=2.7e-12)
          Length = 695

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 204 WLSARNYCRQRCMDLVSLETSDENEWVKARIVQDKIKYIW 323
           W SA   C ++   LV++E S E   VK+ + ++K  Y W
Sbjct: 167 WESAVQRCTEQFASLVTIENSIEEAMVKSMLTENKRNYTW 206


>SB_38168| Best HMM Match : Lectin_C (HMM E-Value=7.9e-06)
          Length = 583

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 135 RYADNKG-YFFSWRDPALRGVEEDWLSARNYCRQRCMDLVSLETSDENEWVK 287
           RY   +G Y+++ +       EE W   + YC  +  DL  +   +ENE+++
Sbjct: 91  RYKCKQGWYYYNGKCYHYSSFEETWTQGQRYCLDQDADLAIINDREENEFIR 142


>SB_4966| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1044

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 198 EDWLSARNYCRQRCMDLVSLETSDENEWVKARI 296
           E W   R  C+ +  DLVS+ET  E  +VK+ +
Sbjct: 869 ESWAEGRKTCQSKGGDLVSIETDGEWSYVKSLV 901


>SB_58330| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 631

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
 Frame = +3

Query: 150 KGYFFSWRDPALRGV--EEDWLS---ARNYCRQR-CMDLVSLETSDENEWVKARI 296
           +G+ F   D + + V   +DW +   A   C+Q     LVS+ET DEN W+  RI
Sbjct: 122 RGFVFERGDFSYKIVLARDDWRTFYEAEQICQQEEDGHLVSIETRDENNWINDRI 176


>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2323

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 204 WLSARNYCRQRCMDLVSLETSDENEWVKARI 296
           W   R  C+ R  DLVS+ET +E  ++  +I
Sbjct: 370 WTENREKCKSRNGDLVSMETEEEWSFINKKI 400


>SB_16280| Best HMM Match : PA14 (HMM E-Value=0.00074)
          Length = 643

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = +3

Query: 132 ERYADNK-GYFFSWRDPALRGV---EEDWLSARNYCRQRCMDLVSLETSDENEWVKARI 296
           ER+ + + G+   W D  +        +W + R YC     DLVS+ET  + ++++  I
Sbjct: 5   ERHEEERHGHAVRWHDGKIYAFIANGSEWKANRKYCLAHNGDLVSIETEKKWQFIRDEI 63


>SB_13654| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1451

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +3

Query: 348 KGCNRPDLLPNEIN 389
           KGC++P  LPNEIN
Sbjct: 291 KGCDKPGRLPNEIN 304


>SB_18120| Best HMM Match : Colipase_C (HMM E-Value=0.87)
          Length = 363

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 165 SWRDPALRGVEEDWLSARNYCRQRCMDLVSLETSDENEWVKAR 293
           S +  +L G  ED+   R Y   +C+ + S+ T+ E E VK R
Sbjct: 191 SCKSSSLDGAREDFPCLRTYLENKCV-IGSMTTNSEFEVVKQR 232


>SB_33276| Best HMM Match : Glyco_transf_43 (HMM E-Value=0)
          Length = 1182

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +3

Query: 111 CVQRNIHERYADNKGYFFSWRDPALRGVEEDWLSARNYCRQRCMDLVSLETSDENEWV 284
           C+  +I  R  ++  Y+   R+ A       W  AR  C     DLV + + +ENE+V
Sbjct: 113 CIYASIRPRKVNDSCYWADTREMA-------WNDARAACGDMGGDLVQIASKEENEFV 163


>SB_2584| Best HMM Match : SPRY (HMM E-Value=0.014)
          Length = 408

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +3

Query: 105 SLCVQRNIHERYADNKGYFFSWRDPA-LRGVEEDWLSARNYCRQRCMDLVSLETSDENEW 281
           SLC   N  +RY +  G  F  +D A +  V E+ ++ R+   +     +S  TS    W
Sbjct: 84  SLCYWENTKKRYLEKFGEHFPGQDDANIAKVYEELVNTRDRVTRLLATSLSEPTSPPETW 143

Query: 282 VKAR 293
             +R
Sbjct: 144 RTSR 147


>SB_1697| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 647

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 14  NEDISTRISCASGGGPRTVPQWTHP 88
           NE+I++  +CA G   ++V  W HP
Sbjct: 239 NEEITSVTTCAMGAVSKSVLPWCHP 263


>SB_48103| Best HMM Match : Lectin_C (HMM E-Value=5.2e-36)
          Length = 137

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 198 EDWLSARNYCRQRCMDLVSLETSDENEWV 284
           + W  AR  C+Q   +L+S++++ EN +V
Sbjct: 28  QTWQDARAACQQAGAELISIQSAAENAFV 56


>SB_39157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 285 KARIVQDKIKYIWTSGRLCDFK 350
           K R+V D ++ +W+ G   D+K
Sbjct: 5   KVRVVSDTVELLWSDGHATDYK 26


>SB_42227| Best HMM Match : SDA1 (HMM E-Value=0.66)
          Length = 806

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +3

Query: 87  LEPPVPSLCVQRNIH 131
           + PP PS+C++RN+H
Sbjct: 136 IPPPPPSVCLERNMH 150


>SB_8855| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 318

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +3

Query: 180 ALRGVEEDWLSARNYCRQRCMDLVSLETSDENEWVKARIVQDKIKYI 320
           A  G ++ W  A+  C +    LV+  T +EN+ V  ++   K  +I
Sbjct: 77  AFHGDQKSWNLAKQACEEFNAHLVTFTTKEENQAVYKKLAVGKSLWI 123


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,881,326
Number of Sequences: 59808
Number of extensions: 417420
Number of successful extensions: 1105
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)