Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313E12f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0516 + 25115623-25115994 33 0.14
06_02_0218 + 13178709-13179034,13180116-13180152 33 0.18
02_03_0145 - 15715181-15715834,15716049-15716271,15717318-15718777 30 0.98
07_03_0019 + 12498351-12498917 29 1.7
12_02_1035 - 25570009-25571241,25571940-25573709,25573797-255751... 29 3.0
02_05_0327 + 27980841-27980972,27981673-27981763,27981848-279819... 29 3.0
01_06_1636 - 38800814-38800918,38801024-38801169,38801276-388013... 29 3.0
07_01_0027 - 195879-196093,196242-196278,196985-197041,197519-19... 28 5.2
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324... 27 6.9
08_02_1436 + 27083698-27084111,27084333-27084416,27084502-270845... 27 9.1
02_05_0419 - 28814754-28816114,28816749-28817435,28817554-288177... 27 9.1
>03_05_0516 + 25115623-25115994
Length = 123
Score = 33.1 bits (72), Expect = 0.14
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -1
Query: 245 RKTKTKTSGGHSQSYYRLAGDAWCSTPFQNSSSFHSSRRTPA 120
R T T T G + + RLAG+ W +T F S S R PA
Sbjct: 72 RATATATVRGGTDDHGRLAGEVWQTTAFSQCGSGGRSARRPA 113
>06_02_0218 + 13178709-13179034,13180116-13180152
Length = 120
Score = 32.7 bits (71), Expect = 0.18
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = -1
Query: 260 GIDSPRKTKTKTSGGHSQSYYRLAGDAWCSTPFQNSSSFHSSRRTPA 120
G+D K T T+ G + + RLAG+AW T F S S R PA
Sbjct: 30 GVDD-LKWATATARGGTDGHGRLAGEAWQKTAFGRRGSDGRSDRRPA 75
>02_03_0145 - 15715181-15715834,15716049-15716271,15717318-15718777
Length = 778
Score = 30.3 bits (65), Expect = 0.98
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 307 CKIKDINYILEQCTNATYSISNSLIVGQLTSENVGSVSELNRSHQT 444
CK +D+ ILE ++ N ++VG S SV+EL R +T
Sbjct: 276 CKEEDVRAILEVMVRKQWARPNPVVVGDSVSVAEASVAELMRRLET 321
>07_03_0019 + 12498351-12498917
Length = 188
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 449 KMVWWLRLSSDTEPTFSLVNCPTISELEI 363
KMVWWL + + PT + CPT S++ +
Sbjct: 125 KMVWWLGGARLSSPTMT-TRCPTTSKMSV 152
>12_02_1035 - 25570009-25571241,25571940-25573709,25573797-25575118,
25575208-25575555,25576540-25576633
Length = 1588
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +2
Query: 113 QRTLEYVENCENWKSSEMVSSTT--HPLQGDNMIVNDLQTSLSSFYEENQYLQM 268
++ LE + +CE+++ SEMV + N VN L+ L++ EN L++
Sbjct: 1086 EKVLELIASCESFEISEMVQKEVLKEEITRRNSYVNALKDKLNAVEIENSRLKV 1139
>02_05_0327 +
27980841-27980972,27981673-27981763,27981848-27981900,
27981990-27982154,27982544-27982662,27982880-27982997,
27983096-27983173,27983326-27983424
Length = 284
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = -2
Query: 136 LDVLQRSLISFLSH*IVLGLPSSVVRFDLR 47
LDVL +++F+ + IV LPSS+V F LR
Sbjct: 238 LDVLDHPILNFIYYLIVEILPSSLVLFILR 267
>01_06_1636 -
38800814-38800918,38801024-38801169,38801276-38801381,
38801609-38801686,38801786-38801839,38801920-38801992,
38802059-38802183,38802268-38802357,38802447-38802526,
38802869-38802995,38803145-38803227,38803575-38803710
Length = 400
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 131 VENCENWKSSEMVSSTTHPLQGDNMIVNDLQTSLSSFYEENQ 256
+E+C N K++E+ SS Q I+++ QT S FY N+
Sbjct: 81 IESCSNRKTTELGSSKLMEAQEFEGILSNNQTVNSDFYNWNK 122
>07_01_0027 -
195879-196093,196242-196278,196985-197041,197519-197680,
198653-198760
Length = 192
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 28 SLGHISVANRSEQRKTEDPK-QFNETGNLSENAGVRREL 141
S+ H+ A+ S Q +PK Q+NE NL ENA EL
Sbjct: 156 SISHL--ASNSNQFIDLEPKPQYNEESNLDENAAAGTEL 192
>03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,
3242494-3242836,3244138-3248540,3248928-3249107,
3249108-3250892,3251055-3252173
Length = 2727
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/82 (20%), Positives = 39/82 (47%)
Frame = +2
Query: 20 EVQVWDISQSQIEANNGRRKTQNNSMRQETYQRTLEYVENCENWKSSEMVSSTTHPLQGD 199
++QV ++ Q + EA+ + Q+ + L +EN + +S E V ++
Sbjct: 768 QIQVQELEQKREEADAMHAQLQDERSNHMQKEAALRALENLHS-QSQEEVKQMARDVEHS 826
Query: 200 NMIVNDLQTSLSSFYEENQYLQ 265
N ++DL+ + ++ +Q L+
Sbjct: 827 NKKLSDLENNNLKLHDLSQGLK 848
>08_02_1436 +
27083698-27084111,27084333-27084416,27084502-27084551,
27084676-27084724,27085471-27085545,27085724-27085837
Length = 261
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 76 PSSVVRFDLRLRYVPDLD 23
PSS V FD+ L Y+P LD
Sbjct: 242 PSSPVMFDVNLLYIPGLD 259
>02_05_0419 -
28814754-28816114,28816749-28817435,28817554-28817774,
28818536-28818750
Length = 827
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = +1
Query: 343 CTNATYSISNSLIVGQLTSENVGSVSELNRSHQTIFNFQRN 465
C AT S S + VS LNR IF+F RN
Sbjct: 530 CLKATRDFSRSYSYFNDYGNDSSKVSPLNRDSDKIFHFDRN 570
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,805,798
Number of Sequences: 37544
Number of extensions: 267246
Number of successful extensions: 718
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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