Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313E12f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3069| Best HMM Match : zf-C2H2 (HMM E-Value=1e-06) 34 0.062
SB_42757| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.44
SB_54365| Best HMM Match : PI-PLC-Y (HMM E-Value=0) 29 1.8
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_38427| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_59580| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_51789| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_49919| Best HMM Match : zf-CCHC (HMM E-Value=0.19) 28 5.4
SB_34265| Best HMM Match : rve (HMM E-Value=0.0015) 28 5.4
SB_24946| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_19644| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_4425| Best HMM Match : DNA_ligase_A_M (HMM E-Value=0) 27 7.1
SB_29530| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_6715| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_6853| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_3069| Best HMM Match : zf-C2H2 (HMM E-Value=1e-06)
Length = 625
Score = 34.3 bits (75), Expect = 0.062
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +2
Query: 188 LQGDNMIVNDLQTSLSSFYEENQYLQMIQ 274
L NM+VND+ T L+S EE++YL+M Q
Sbjct: 583 LGNGNMVVNDMNTLLNSLAEEDKYLEMRQ 611
>SB_42757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 350
Score = 31.5 bits (68), Expect = 0.44
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -1
Query: 179 WCSTPFQNSSSFHSSRRTPAFSDK-FPVSLNCFGSSVFRCSLRFATEICPRL 27
WC+ PF + S + R P DK FP SS + +LR A ++C L
Sbjct: 281 WCNQPFNKNVSTNIGREFPKLVDKSFP------ASSTLKKTLRLAIDVCQML 326
>SB_54365| Best HMM Match : PI-PLC-Y (HMM E-Value=0)
Length = 593
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +2
Query: 62 NNGRRKTQNNSMRQETYQRTLEYVENCENWKSSEMVSSTTHPLQGDNMIVNDLQTSLSSF 241
N GR KT+ S+R+ R ++ E + PL+ + +LQTSL++F
Sbjct: 374 NMGRAKTKKTSLRKSKKGREYTSMKTVGVKAVDETFKNAIQPLRDGADLRENLQTSLANF 433
Query: 242 YE 247
E
Sbjct: 434 KE 435
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +2
Query: 41 SQSQIEANNGRRKTQN--NSMRQETYQRTLEYVENCENWKSSEMVSSTTHPLQ 193
S Q+ + G+ + N +SM Q+ +E V+ + W+S VSS PL+
Sbjct: 2030 SSHQLPKSQGQWHSSNIPSSMAQQVAPPAMENVDMHQEWQSQTQVSSGVPPLK 2082
>SB_38427| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1106
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 37 HISVANRSEQRKTEDPKQFNETGNLSENAGVRREL 141
+IS N S+Q+ + TGN S+ AGVR+ +
Sbjct: 162 YISTGNESDQQACVRALELCRTGNESDQAGVRQSI 196
>SB_59580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 999
Score = 27.9 bits (59), Expect = 5.4
Identities = 8/40 (20%), Positives = 21/40 (52%)
Frame = +2
Query: 44 QSQIEANNGRRKTQNNSMRQETYQRTLEYVENCENWKSSE 163
+ +++ R KT+ +E Y++T++ + + W S+
Sbjct: 899 KKELKEKKKREKTEKEKQEEEKYEKTIKSADEFQKWVESK 938
>SB_51789| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 108
Score = 27.9 bits (59), Expect = 5.4
Identities = 8/40 (20%), Positives = 21/40 (52%)
Frame = +2
Query: 44 QSQIEANNGRRKTQNNSMRQETYQRTLEYVENCENWKSSE 163
+ +++ R KT+ +E Y++T++ + + W S+
Sbjct: 38 KKELKEKKKREKTEKEKQEEEKYEKTIKSADEFQKWVESK 77
>SB_49919| Best HMM Match : zf-CCHC (HMM E-Value=0.19)
Length = 523
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -1
Query: 161 QNSSSFHSSRRTPAFSDKFPVSLNCFGS 78
Q SSS SS ++ FSD P S+N +GS
Sbjct: 352 QFSSSLDSSPQSETFSDHLPWSVNEYGS 379
>SB_34265| Best HMM Match : rve (HMM E-Value=0.0015)
Length = 1069
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = -1
Query: 203 YYRLAGDAWCSTPFQNSSSFHSSRRTPAFSDKFPVSLNCFGSSVFR 66
Y + A ++ + F+ + H R +D++P+ LNC + V R
Sbjct: 164 YKKAAFESMSGSVFRGYRNVHVIRGYDTAADEYPIHLNCLATKVER 209
>SB_24946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 822
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/61 (29%), Positives = 23/61 (37%)
Frame = -1
Query: 254 DSPRKTKTKTSGGHSQSYYRLAGDAWCSTPFQNSSSFHSSRRTPAFSDKFPVSLNCFGSS 75
DSP T K S G + S ++L + C+T F S S K FG
Sbjct: 149 DSPFSTLVKMSTGKNPSTFQLPPELKCTTVFPGDRKRKGSTEDKGSSSKSSKLTELFGKL 208
Query: 74 V 72
V
Sbjct: 209 V 209
>SB_19644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 110
Score = 27.9 bits (59), Expect = 5.4
Identities = 8/40 (20%), Positives = 21/40 (52%)
Frame = +2
Query: 44 QSQIEANNGRRKTQNNSMRQETYQRTLEYVENCENWKSSE 163
+ +++ R KT+ +E Y++T++ + + W S+
Sbjct: 10 KKELKEKKKREKTEKEKQEEEKYEKTIKSADEFQKWVESK 49
>SB_4425| Best HMM Match : DNA_ligase_A_M (HMM E-Value=0)
Length = 575
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/56 (26%), Positives = 34/56 (60%)
Frame = -2
Query: 229 RRLEVIHNHIIALQGMRGARHHFRTLPVFTVLDVLQRSLISFLSH*IVLGLPSSVV 62
+++++I +A + AR+ R+L + + ++S+++ L+H +VL PSSV+
Sbjct: 38 KKVDIIKGMFVACRHSE-ARYLIRSLSGKLRIGLAEQSVLTALAHSVVLTPPSSVI 92
>SB_29530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 58
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = -1
Query: 185 DAWC---STPFQNSSSFHSSRRTPAFSDK 108
D WC +TP+ S++FHS+ P F+ K
Sbjct: 16 DDWCGDATTPYFRSTAFHSNYLFPDFNQK 44
>SB_6715| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 169
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 352 ATYSISNSLIVGQLTSENVGSVSELNRSHQTIFNFQRNYTTCYK 483
A ++ NS ++ + N+GSVS+ H T+ N +R Y T ++
Sbjct: 70 APVNVKNSY--SRIRTINLGSVSKERNFHVTLPNIKRTYKTSFE 111
>SB_6853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 171
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +1
Query: 388 QLTSENVGSVSELNRSHQTIFNFQRNYTTCYK 483
++ + N+GSVS+ + H T+ N +R Y T ++
Sbjct: 67 RIRTSNLGSVSKKMKFHVTLPNVKRMYKTSFE 98
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,382,684
Number of Sequences: 59808
Number of extensions: 336769
Number of successful extensions: 1003
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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