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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313E12f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3069| Best HMM Match : zf-C2H2 (HMM E-Value=1e-06)                  34   0.062
SB_42757| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.44 
SB_54365| Best HMM Match : PI-PLC-Y (HMM E-Value=0)                    29   1.8  
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_38427| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_59580| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_51789| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_49919| Best HMM Match : zf-CCHC (HMM E-Value=0.19)                  28   5.4  
SB_34265| Best HMM Match : rve (HMM E-Value=0.0015)                    28   5.4  
SB_24946| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_19644| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_4425| Best HMM Match : DNA_ligase_A_M (HMM E-Value=0)               27   7.1  
SB_29530| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_6715| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.1  
SB_6853| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  

>SB_3069| Best HMM Match : zf-C2H2 (HMM E-Value=1e-06)
          Length = 625

 Score = 34.3 bits (75), Expect = 0.062
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = +2

Query: 188 LQGDNMIVNDLQTSLSSFYEENQYLQMIQ 274
           L   NM+VND+ T L+S  EE++YL+M Q
Sbjct: 583 LGNGNMVVNDMNTLLNSLAEEDKYLEMRQ 611


>SB_42757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 350

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -1

Query: 179 WCSTPFQNSSSFHSSRRTPAFSDK-FPVSLNCFGSSVFRCSLRFATEICPRL 27
           WC+ PF  + S +  R  P   DK FP       SS  + +LR A ++C  L
Sbjct: 281 WCNQPFNKNVSTNIGREFPKLVDKSFP------ASSTLKKTLRLAIDVCQML 326


>SB_54365| Best HMM Match : PI-PLC-Y (HMM E-Value=0)
          Length = 593

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +2

Query: 62  NNGRRKTQNNSMRQETYQRTLEYVENCENWKSSEMVSSTTHPLQGDNMIVNDLQTSLSSF 241
           N GR KT+  S+R+    R    ++        E   +   PL+    +  +LQTSL++F
Sbjct: 374 NMGRAKTKKTSLRKSKKGREYTSMKTVGVKAVDETFKNAIQPLRDGADLRENLQTSLANF 433

Query: 242 YE 247
            E
Sbjct: 434 KE 435


>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4529

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +2

Query: 41   SQSQIEANNGRRKTQN--NSMRQETYQRTLEYVENCENWKSSEMVSSTTHPLQ 193
            S  Q+  + G+  + N  +SM Q+     +E V+  + W+S   VSS   PL+
Sbjct: 2030 SSHQLPKSQGQWHSSNIPSSMAQQVAPPAMENVDMHQEWQSQTQVSSGVPPLK 2082


>SB_38427| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1106

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 37  HISVANRSEQRKTEDPKQFNETGNLSENAGVRREL 141
           +IS  N S+Q+      +   TGN S+ AGVR+ +
Sbjct: 162 YISTGNESDQQACVRALELCRTGNESDQAGVRQSI 196


>SB_59580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 999

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 8/40 (20%), Positives = 21/40 (52%)
 Frame = +2

Query: 44   QSQIEANNGRRKTQNNSMRQETYQRTLEYVENCENWKSSE 163
            + +++    R KT+     +E Y++T++  +  + W  S+
Sbjct: 899  KKELKEKKKREKTEKEKQEEEKYEKTIKSADEFQKWVESK 938


>SB_51789| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 8/40 (20%), Positives = 21/40 (52%)
 Frame = +2

Query: 44  QSQIEANNGRRKTQNNSMRQETYQRTLEYVENCENWKSSE 163
           + +++    R KT+     +E Y++T++  +  + W  S+
Sbjct: 38  KKELKEKKKREKTEKEKQEEEKYEKTIKSADEFQKWVESK 77


>SB_49919| Best HMM Match : zf-CCHC (HMM E-Value=0.19)
          Length = 523

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -1

Query: 161 QNSSSFHSSRRTPAFSDKFPVSLNCFGS 78
           Q SSS  SS ++  FSD  P S+N +GS
Sbjct: 352 QFSSSLDSSPQSETFSDHLPWSVNEYGS 379


>SB_34265| Best HMM Match : rve (HMM E-Value=0.0015)
          Length = 1069

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -1

Query: 203 YYRLAGDAWCSTPFQNSSSFHSSRRTPAFSDKFPVSLNCFGSSVFR 66
           Y + A ++   + F+   + H  R     +D++P+ LNC  + V R
Sbjct: 164 YKKAAFESMSGSVFRGYRNVHVIRGYDTAADEYPIHLNCLATKVER 209


>SB_24946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 822

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/61 (29%), Positives = 23/61 (37%)
 Frame = -1

Query: 254 DSPRKTKTKTSGGHSQSYYRLAGDAWCSTPFQNSSSFHSSRRTPAFSDKFPVSLNCFGSS 75
           DSP  T  K S G + S ++L  +  C+T F        S      S K       FG  
Sbjct: 149 DSPFSTLVKMSTGKNPSTFQLPPELKCTTVFPGDRKRKGSTEDKGSSSKSSKLTELFGKL 208

Query: 74  V 72
           V
Sbjct: 209 V 209


>SB_19644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 8/40 (20%), Positives = 21/40 (52%)
 Frame = +2

Query: 44  QSQIEANNGRRKTQNNSMRQETYQRTLEYVENCENWKSSE 163
           + +++    R KT+     +E Y++T++  +  + W  S+
Sbjct: 10  KKELKEKKKREKTEKEKQEEEKYEKTIKSADEFQKWVESK 49


>SB_4425| Best HMM Match : DNA_ligase_A_M (HMM E-Value=0)
          Length = 575

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/56 (26%), Positives = 34/56 (60%)
 Frame = -2

Query: 229 RRLEVIHNHIIALQGMRGARHHFRTLPVFTVLDVLQRSLISFLSH*IVLGLPSSVV 62
           +++++I    +A +    AR+  R+L     + + ++S+++ L+H +VL  PSSV+
Sbjct: 38  KKVDIIKGMFVACRHSE-ARYLIRSLSGKLRIGLAEQSVLTALAHSVVLTPPSSVI 92


>SB_29530| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = -1

Query: 185 DAWC---STPFQNSSSFHSSRRTPAFSDK 108
           D WC   +TP+  S++FHS+   P F+ K
Sbjct: 16  DDWCGDATTPYFRSTAFHSNYLFPDFNQK 44


>SB_6715| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 169

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +1

Query: 352 ATYSISNSLIVGQLTSENVGSVSELNRSHQTIFNFQRNYTTCYK 483
           A  ++ NS    ++ + N+GSVS+    H T+ N +R Y T ++
Sbjct: 70  APVNVKNSY--SRIRTINLGSVSKERNFHVTLPNIKRTYKTSFE 111


>SB_6853| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +1

Query: 388 QLTSENVGSVSELNRSHQTIFNFQRNYTTCYK 483
           ++ + N+GSVS+  + H T+ N +R Y T ++
Sbjct: 67  RIRTSNLGSVSKKMKFHVTLPNVKRMYKTSFE 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,382,684
Number of Sequences: 59808
Number of extensions: 336769
Number of successful extensions: 1003
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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