BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS313E12f (521 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_3069| Best HMM Match : zf-C2H2 (HMM E-Value=1e-06) 34 0.062 SB_42757| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.44 SB_54365| Best HMM Match : PI-PLC-Y (HMM E-Value=0) 29 1.8 SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1 SB_38427| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1 SB_59580| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4 SB_51789| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4 SB_49919| Best HMM Match : zf-CCHC (HMM E-Value=0.19) 28 5.4 SB_34265| Best HMM Match : rve (HMM E-Value=0.0015) 28 5.4 SB_24946| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4 SB_19644| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4 SB_4425| Best HMM Match : DNA_ligase_A_M (HMM E-Value=0) 27 7.1 SB_29530| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1 SB_6715| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1 SB_6853| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4 >SB_3069| Best HMM Match : zf-C2H2 (HMM E-Value=1e-06) Length = 625 Score = 34.3 bits (75), Expect = 0.062 Identities = 15/29 (51%), Positives = 21/29 (72%) Frame = +2 Query: 188 LQGDNMIVNDLQTSLSSFYEENQYLQMIQ 274 L NM+VND+ T L+S EE++YL+M Q Sbjct: 583 LGNGNMVVNDMNTLLNSLAEEDKYLEMRQ 611 >SB_42757| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 350 Score = 31.5 bits (68), Expect = 0.44 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Frame = -1 Query: 179 WCSTPFQNSSSFHSSRRTPAFSDK-FPVSLNCFGSSVFRCSLRFATEICPRL 27 WC+ PF + S + R P DK FP SS + +LR A ++C L Sbjct: 281 WCNQPFNKNVSTNIGREFPKLVDKSFP------ASSTLKKTLRLAIDVCQML 326 >SB_54365| Best HMM Match : PI-PLC-Y (HMM E-Value=0) Length = 593 Score = 29.5 bits (63), Expect = 1.8 Identities = 18/62 (29%), Positives = 29/62 (46%) Frame = +2 Query: 62 NNGRRKTQNNSMRQETYQRTLEYVENCENWKSSEMVSSTTHPLQGDNMIVNDLQTSLSSF 241 N GR KT+ S+R+ R ++ E + PL+ + +LQTSL++F Sbjct: 374 NMGRAKTKKTSLRKSKKGREYTSMKTVGVKAVDETFKNAIQPLRDGADLRENLQTSLANF 433 Query: 242 YE 247 E Sbjct: 434 KE 435 >SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 4529 Score = 28.3 bits (60), Expect = 4.1 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Frame = +2 Query: 41 SQSQIEANNGRRKTQN--NSMRQETYQRTLEYVENCENWKSSEMVSSTTHPLQ 193 S Q+ + G+ + N +SM Q+ +E V+ + W+S VSS PL+ Sbjct: 2030 SSHQLPKSQGQWHSSNIPSSMAQQVAPPAMENVDMHQEWQSQTQVSSGVPPLK 2082 >SB_38427| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1106 Score = 28.3 bits (60), Expect = 4.1 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = +1 Query: 37 HISVANRSEQRKTEDPKQFNETGNLSENAGVRREL 141 +IS N S+Q+ + TGN S+ AGVR+ + Sbjct: 162 YISTGNESDQQACVRALELCRTGNESDQAGVRQSI 196 >SB_59580| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 999 Score = 27.9 bits (59), Expect = 5.4 Identities = 8/40 (20%), Positives = 21/40 (52%) Frame = +2 Query: 44 QSQIEANNGRRKTQNNSMRQETYQRTLEYVENCENWKSSE 163 + +++ R KT+ +E Y++T++ + + W S+ Sbjct: 899 KKELKEKKKREKTEKEKQEEEKYEKTIKSADEFQKWVESK 938 >SB_51789| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 108 Score = 27.9 bits (59), Expect = 5.4 Identities = 8/40 (20%), Positives = 21/40 (52%) Frame = +2 Query: 44 QSQIEANNGRRKTQNNSMRQETYQRTLEYVENCENWKSSE 163 + +++ R KT+ +E Y++T++ + + W S+ Sbjct: 38 KKELKEKKKREKTEKEKQEEEKYEKTIKSADEFQKWVESK 77 >SB_49919| Best HMM Match : zf-CCHC (HMM E-Value=0.19) Length = 523 Score = 27.9 bits (59), Expect = 5.4 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = -1 Query: 161 QNSSSFHSSRRTPAFSDKFPVSLNCFGS 78 Q SSS SS ++ FSD P S+N +GS Sbjct: 352 QFSSSLDSSPQSETFSDHLPWSVNEYGS 379 >SB_34265| Best HMM Match : rve (HMM E-Value=0.0015) Length = 1069 Score = 27.9 bits (59), Expect = 5.4 Identities = 12/46 (26%), Positives = 23/46 (50%) Frame = -1 Query: 203 YYRLAGDAWCSTPFQNSSSFHSSRRTPAFSDKFPVSLNCFGSSVFR 66 Y + A ++ + F+ + H R +D++P+ LNC + V R Sbjct: 164 YKKAAFESMSGSVFRGYRNVHVIRGYDTAADEYPIHLNCLATKVER 209 >SB_24946| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 822 Score = 27.9 bits (59), Expect = 5.4 Identities = 18/61 (29%), Positives = 23/61 (37%) Frame = -1 Query: 254 DSPRKTKTKTSGGHSQSYYRLAGDAWCSTPFQNSSSFHSSRRTPAFSDKFPVSLNCFGSS 75 DSP T K S G + S ++L + C+T F S S K FG Sbjct: 149 DSPFSTLVKMSTGKNPSTFQLPPELKCTTVFPGDRKRKGSTEDKGSSSKSSKLTELFGKL 208 Query: 74 V 72 V Sbjct: 209 V 209 >SB_19644| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 110 Score = 27.9 bits (59), Expect = 5.4 Identities = 8/40 (20%), Positives = 21/40 (52%) Frame = +2 Query: 44 QSQIEANNGRRKTQNNSMRQETYQRTLEYVENCENWKSSE 163 + +++ R KT+ +E Y++T++ + + W S+ Sbjct: 10 KKELKEKKKREKTEKEKQEEEKYEKTIKSADEFQKWVESK 49 >SB_4425| Best HMM Match : DNA_ligase_A_M (HMM E-Value=0) Length = 575 Score = 27.5 bits (58), Expect = 7.1 Identities = 15/56 (26%), Positives = 34/56 (60%) Frame = -2 Query: 229 RRLEVIHNHIIALQGMRGARHHFRTLPVFTVLDVLQRSLISFLSH*IVLGLPSSVV 62 +++++I +A + AR+ R+L + + ++S+++ L+H +VL PSSV+ Sbjct: 38 KKVDIIKGMFVACRHSE-ARYLIRSLSGKLRIGLAEQSVLTALAHSVVLTPPSSVI 92 >SB_29530| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 58 Score = 27.5 bits (58), Expect = 7.1 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 3/29 (10%) Frame = -1 Query: 185 DAWC---STPFQNSSSFHSSRRTPAFSDK 108 D WC +TP+ S++FHS+ P F+ K Sbjct: 16 DDWCGDATTPYFRSTAFHSNYLFPDFNQK 44 >SB_6715| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 169 Score = 27.5 bits (58), Expect = 7.1 Identities = 14/44 (31%), Positives = 25/44 (56%) Frame = +1 Query: 352 ATYSISNSLIVGQLTSENVGSVSELNRSHQTIFNFQRNYTTCYK 483 A ++ NS ++ + N+GSVS+ H T+ N +R Y T ++ Sbjct: 70 APVNVKNSY--SRIRTINLGSVSKERNFHVTLPNIKRTYKTSFE 111 >SB_6853| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 171 Score = 27.1 bits (57), Expect = 9.4 Identities = 11/32 (34%), Positives = 21/32 (65%) Frame = +1 Query: 388 QLTSENVGSVSELNRSHQTIFNFQRNYTTCYK 483 ++ + N+GSVS+ + H T+ N +R Y T ++ Sbjct: 67 RIRTSNLGSVSKKMKFHVTLPNVKRMYKTSFE 98 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,382,684 Number of Sequences: 59808 Number of extensions: 336769 Number of successful extensions: 1003 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 952 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1003 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1172759136 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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