Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313E12f
         (521 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            25   2.0  
AB090822-1|BAC57919.1|  468|Anopheles gambiae gag-like protein p...    25   2.0  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            24   3.6  
AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    23   6.2  
AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    23   8.2  

>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +1

Query: 313  IKDINYILEQCTNATYSISNSLIVGQLTSENVGSVSELNRSHQTIFN 453
            I+  N IL+ CTN    +    +  +     V S+SE  R    I+N
Sbjct: 2386 IEGSNMILKACTNLKEEMMKQKLFSESADAPVASLSEGFRKALQIYN 2432


>AB090822-1|BAC57919.1|  468|Anopheles gambiae gag-like protein
           protein.
          Length = 468

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +2

Query: 209 VNDLQTSLSSFYEENQYLQMIQ*LLKCIINIFFVKSR 319
           V DLQ SL++  EE   L ++   L+  I+I   KSR
Sbjct: 49  VEDLQRSLAAEKEEKMKLTVLLQELQAQISIMMKKSR 85


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 23.8 bits (49), Expect = 3.6
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +2

Query: 86   NNSMRQETYQRTLEYVENCENWKSSEMVSSTTHPLQGDNMIVN 214
            NN  R +     + ++ +  NW  +EM   TTH   G  +  N
Sbjct: 1412 NNQKRVQLTGAKVHHIMS--NWCYAEMTIDTTHTADGSKLSFN 1452


>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1022

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 101 QETYQRTLEYVENCENWKSSEMVSSTTHP 187
           ++ YQR L+     +NWK   +V S   P
Sbjct: 441 KKVYQRCLDTGVFPDNWKKQRLVLSIPKP 469


>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 389 CPTISELEIEYVALVH-CSSM*FMSLILQ 306
           C T+S  E EYVAL   C  + ++  +++
Sbjct: 822 CVTLSSTEAEYVALAEACRELLWLQKLMK 850


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 553,404
Number of Sequences: 2352
Number of extensions: 11440
Number of successful extensions: 31
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 47783067
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)