Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313E12f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g04140.1 68416.m00438 ankyrin repeat family protein contains ... 30 1.1
At4g14250.1 68417.m02198 UBX domain-containing protein low simil... 29 2.5
At1g77400.1 68414.m09013 expressed protein 28 3.3
At2g46550.1 68415.m05807 expressed protein 28 4.4
At2g25490.1 68415.m03052 F-box family protein (FBL6) contains si... 28 4.4
At2g02180.1 68415.m00154 tobamovirus multiplication protein 3 (T... 28 4.4
At1g14530.2 68414.m01724 tobamovirus multiplication protein 3, p... 28 4.4
At1g14530.1 68414.m01723 tobamovirus multiplication protein 3, p... 28 4.4
At5g17750.1 68418.m02081 AAA-type ATPase family protein contains... 27 7.7
At5g13910.1 68418.m01627 AP2/EREBP-like transcription factor LEA... 27 7.7
At1g61960.1 68414.m06989 mitochondrial transcription termination... 27 7.7
At1g48820.1 68414.m05463 terpene synthase/cyclase family protein... 27 7.7
>At3g04140.1 68416.m00438 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 656
Score = 29.9 bits (64), Expect = 1.1
Identities = 20/44 (45%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -1
Query: 206 SYYRLAGDAWCSTPFQNSSSFHSSRRTPAFSDK--FPVSLNCFG 81
S Y A + CSTPFQ SS RRTPA + F CFG
Sbjct: 580 SDYSRAPSSACSTPFQTFSS-ELGRRTPAMKKQGSFMNRYLCFG 622
>At4g14250.1 68417.m02198 UBX domain-containing protein low
similarity to 60S ribosomal protein L2 [Nicotiana
tabacum] GI:9230281; contains Pfam profile PF00789: UBX
domain
Length = 724
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = +2
Query: 56 EANNGRRKTQNNSMRQETYQRTLEYVENCENWKSSEMVSSTTHPLQGD 199
E +N ++ NN + T+++ LE + E W S P GD
Sbjct: 566 EEDNWSSRSNNNQVVAPTWEKELEEQDEWEIWSSRSDTDDFVPPFMGD 613
>At1g77400.1 68414.m09013 expressed protein
Length = 232
Score = 28.3 bits (60), Expect = 3.3
Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = -1
Query: 278 TIESFGGIDSP--RKTKTKTSGGHSQSYYRLAGDAWCSTPFQNSSSFHSSRRTPAFSDKF 105
++ FG SP R K K+ G +S R D +CS S SSRR + S ++
Sbjct: 147 SVAGFGCFPSPKFRLRKVKSGGSRRKSGSRSENDYYCSDMETMSPWTVSSRR--SVSPRW 204
Query: 104 PVSLNCFGSSVFRCSLRFATE 42
+ F S R S RFA E
Sbjct: 205 ESPKSSFSS--LRFSPRFANE 223
>At2g46550.1 68415.m05807 expressed protein
Length = 397
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 32 WDISQSQIEANNGRRKTQNNSMRQETYQRTLEYVENCE 145
W++ S+ +A R T + + QR+L+YVENC+
Sbjct: 171 WNLLSSE-KAAPWWRTTDKDELASLVAQRSLDYVENCD 207
>At2g25490.1 68415.m03052 F-box family protein (FBL6) contains
similarity to grr1 GI:2407790 from [Glycine max]
Length = 628
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -1
Query: 404 FSLVNCPTISELEIEYVALVHCSSM*FMSL 315
FSLVNC +I +L A HCS++ +S+
Sbjct: 419 FSLVNCLSIRDLTTGLPASSHCSALRSLSI 448
>At2g02180.1 68415.m00154 tobamovirus multiplication protein 3
(TOM3) identical to tobamovirus multiplication protein
(TOM3) GI:15425641 from [Arabidopsis thaliana]
Length = 303
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = -2
Query: 136 LDVLQRSLISFLSH*IVLGLPSSVVRFDLR 47
LDVL +++F+ + +V LPSS+V F LR
Sbjct: 259 LDVLDHPILNFIYYLLVEILPSSLVLFILR 288
>At1g14530.2 68414.m01724 tobamovirus multiplication protein 3,
putative / TOM3, putative (THH1) identical to THH1
(GI:15706301) [Arabidopsis thaliana]; supporting cDNA
gi|15706300|dbj|AB057678.1|
Length = 293
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = -2
Query: 136 LDVLQRSLISFLSH*IVLGLPSSVVRFDLR 47
LDVL +++F+ + +V LPSS+V F LR
Sbjct: 249 LDVLDHPILNFIYYLLVEILPSSLVLFILR 278
>At1g14530.1 68414.m01723 tobamovirus multiplication protein 3,
putative / TOM3, putative (THH1) identical to THH1
(GI:15706301) [Arabidopsis thaliana]; supporting cDNA
gi|15706300|dbj|AB057678.1|
Length = 293
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = -2
Query: 136 LDVLQRSLISFLSH*IVLGLPSSVVRFDLR 47
LDVL +++F+ + +V LPSS+V F LR
Sbjct: 249 LDVLDHPILNFIYYLLVEILPSSLVLFILR 278
>At5g17750.1 68418.m02081 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 392
Score = 27.1 bits (57), Expect = 7.7
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -1
Query: 215 HSQSYYRLAGDAWCSTPFQNSSSFHSSRRTPAFSDKFPVSLNCF 84
HS S Y L W S F++ S+FH+ TP L+ F
Sbjct: 165 HSYSSYTLR---WQSVKFEHPSTFHTMAMTPKLKSSVMEDLDRF 205
>At5g13910.1 68418.m01627 AP2/EREBP-like transcription factor LEAFY
PETIOLE, putative nearly identical to AP2/EREBP-like
transcription factor LEAFY PETIOLE [Arabidopsis
thaliana] GI:6942018
Length = 211
Score = 27.1 bits (57), Expect = 7.7
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -1
Query: 215 HSQSYYRLAGDAWCSTPFQNSSSFHSSRRTPAFSDKFPVSLNCFGS 78
+SQ + GD + S+ + +S F R P SD FP N FGS
Sbjct: 170 YSQPQWTWTGDDY-SSEYVHSPMFS---RMPPVSDSFPQGFNYFGS 211
>At1g61960.1 68414.m06989 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 457
Score = 27.1 bits (57), Expect = 7.7
Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +2
Query: 92 SMRQETYQRTLEYVENCENWKSSEMVSSTTHP---LQGDNMIVNDLQTSLSSFYEENQYL 262
S ++ T E +++C K ++ HP + IVN ++T L + +++
Sbjct: 287 SYSEKKITHTFETLKSCGLLKHEVLLLLKKHPKCICSSEQKIVNSIETFLGLGFSRDEFA 346
Query: 263 QMIQ*LLKCI 292
M++ +CI
Sbjct: 347 MMVKRYPQCI 356
>At1g48820.1 68414.m05463 terpene synthase/cyclase family protein
similar to terpene cyclase GI:9293912 from [Arabidopsis
thaliana]
Length = 561
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/78 (20%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +2
Query: 77 KTQNNSMRQETYQRTLEYVENCENWKSSEMVSSTTHPLQGDNMIVND-LQTSLSSFYEEN 253
K Q +E ++ + V + E + E + P Q +++ D L+ + S+ +++
Sbjct: 482 KKQYGVTEEEAIRKLHQIVADGEKMMNEEFLKPINVPYQVPKVVILDTLRAANVSYEKDD 541
Query: 254 QYLQMIQ*LLKCIINIFF 307
++ + + L CI +I+F
Sbjct: 542 EFTRPGEHLKNCITSIYF 559
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,526,646
Number of Sequences: 28952
Number of extensions: 231338
Number of successful extensions: 683
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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