SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313E11f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    23   1.6  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    23   1.6  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    22   2.9  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    21   6.6  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   6.6  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   6.6  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   6.6  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   6.6  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   6.6  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   8.7  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   8.7  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   8.7  

>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 143 TVPLAVCNVIPNFLDVLHIFVKVY 72
           TVP+ VC ++    +V+ I++ VY
Sbjct: 285 TVPMIVCPIVWLMDEVVEIYLLVY 308


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 143 TVPLAVCNVIPNFLDVLHIFVKVY 72
           TVP+ VC ++    +V+ I++ VY
Sbjct: 285 TVPMIVCPIVWLMDEVVEIYLLVY 308


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 358 FVTKKHTSKSWLFSIPNLL 302
           F+T+  +  +WLF + N L
Sbjct: 233 FITEHESKPNWLFFLANFL 251


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 417 TELCNFTNLKDVKSVYKLNNL 479
           T  C F NL+++  V   NN+
Sbjct: 246 TSSCTFDNLEELGPVCNSNNI 266


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 78  LYKNVQNIEEIRNHITNGEW 137
           L  N ++  ++ + ITNGEW
Sbjct: 158 LVLNSESGGDLSDFITNGEW 177


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 78  LYKNVQNIEEIRNHITNGEW 137
           L  N ++  ++ + ITNGEW
Sbjct: 158 LVLNSESGGDLSDFITNGEW 177


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 78  LYKNVQNIEEIRNHITNGEW 137
           L  N ++  ++ + ITNGEW
Sbjct: 158 LVLNSESGGDLSDFITNGEW 177


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 78  LYKNVQNIEEIRNHITNGEW 137
           L  N ++  ++ + ITNGEW
Sbjct: 158 LVLNSESGGDLSDFITNGEW 177


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 78  LYKNVQNIEEIRNHITNGEW 137
           L  N ++  ++ + ITNGEW
Sbjct: 158 LVLNSESGGDLSDFITNGEW 177


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 164 QARLNNCTVPLAVCNVIPNF 105
           + ++NNC V      V+PNF
Sbjct: 90  KTKVNNCDVIEKPRKVLPNF 109


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 216 LRQLLCSPPQPLEMDLRS 163
           LR+  C P +PL +D ++
Sbjct: 180 LREERCDPDRPLPLDQKA 197


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +3

Query: 63  TLKIYLYKNVQN 98
           TLKI +Y+N++N
Sbjct: 566 TLKIGVYRNIKN 577


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,279
Number of Sequences: 336
Number of extensions: 2725
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -