Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313E11f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0276 + 2270244-2270314,2270437-2270503,2270613-2270735,227...    42   3e-04
08_01_0410 + 3661304-3661383,3661494-3661673,3661757-3661870,366...    27   6.9  
06_03_0489 - 21373236-21373311,21373474-21373542,21374468-21374988     27   6.9  
01_01_0667 + 5099026-5099188,5099262-5099661,5099748-5100648           27   6.9  

>01_01_0276 +
           2270244-2270314,2270437-2270503,2270613-2270735,
           2270844-2270927,2271733-2271819,2272238-2272369,
           2272403-2272498,2272906-2272929
          Length = 227

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
 Frame = +3

Query: 63  TLKIYLYKNVQNIEEIRNHITNG--EWNCAIIKPSLILDPFQXXXXXXXXXXXXKFSTMV 236
           ++ + L+ +V N  E+   + +G  E   A +  SL+ D F                ++ 
Sbjct: 11  SVSLGLFSDVSNSWELLELMQSGKLEPEVAFLNASLVPDVFPVLAAAHKAVVSQGRESLT 70

Query: 237 TRTVFGEILYNLSLTKNITQSLSKFGI--EKSHDLLVCFLVTNE 362
           TRT+  E++YN S +K+IT+SL + GI  + S+ L   F  +NE
Sbjct: 71  TRTLHSELVYNYSGSKHITESLKRCGISDDTSYILAARFDASNE 114


>08_01_0410 +
           3661304-3661383,3661494-3661673,3661757-3661870,
           3661975-3662133,3662193-3662243,3662838-3663018,
           3663102-3663228,3663322-3663431,3663529-3663667,
           3663767-3663876,3664002-3664071,3664247-3664320,
           3664458-3664553,3664682-3664777,3665041-3665168,
           3665422-3665656,3665743-3665910,3666274-3666381,
           3666468-3666617,3666905-3667015,3667118-3667297,
           3667427-3667555,3667819-3667914,3668108-3668293,
           3668431-3668603,3668720-3668921
          Length = 1150

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +1

Query: 97  TSRKLGITLQTASGTVQLLSLA*S*IHFKWLWRRTEQ 207
           TS K+   L T +G V LL+L  + +H  W W+RT++
Sbjct: 789 TSSKVVRLLYTNNG-VALLALGSNAVHKLWKWQRTDR 824


>06_03_0489 - 21373236-21373311,21373474-21373542,21374468-21374988
          Length = 221

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 199 TEQLSQRNLVQWLRELCSEKFCTIYRLPK 285
           T   + +N V+ L+++  E+F +IYR PK
Sbjct: 155 TAMEAMKNFVKGLQDVFGERFQSIYRFPK 183


>01_01_0667 + 5099026-5099188,5099262-5099661,5099748-5100648
          Length = 487

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -1

Query: 251 EHSSRNHCTK-FRCDNCSVRRHSHLKW 174
           +H SR H  K ++CD CS R   H  W
Sbjct: 140 KHFSRKHGEKKWKCDKCSKRYAVHSDW 166


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,135,450
Number of Sequences: 37544
Number of extensions: 221385
Number of successful extensions: 534
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)