Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313E11f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27905| Best HMM Match : MyTH4 (HMM E-Value=0.014)                   29   2.3  
SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_19346| Best HMM Match : ATP-synt_E_2 (HMM E-Value=2.4)              28   5.4  
SB_34739| Best HMM Match : DUF360 (HMM E-Value=0.39)                   28   5.4  
SB_48587| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_3014| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  

>SB_27905| Best HMM Match : MyTH4 (HMM E-Value=0.014)
          Length = 478

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -1

Query: 218 RCDNCSVRR--HSHLKWI*DQARLNNCTVPLAVCNVIPNFLDVLHIFVK 78
           RCDN       HS +K+I    R++    PL  C ++P F+  L  F+K
Sbjct: 23  RCDNLRYDHVNHSRIKYI-TFTRISTLK-PLTPCRLVPQFVKYLWCFIK 69


>SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2408

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = -1

Query: 155  LNNCTVPLAVCNVIPNFLDVLHIFVKVY 72
            L++CTVPL+ C V+  +L+   IFV +Y
Sbjct: 1644 LSDCTVPLSACTVLLLYLN--RIFVGLY 1669


>SB_19346| Best HMM Match : ATP-synt_E_2 (HMM E-Value=2.4)
          Length = 528

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -1

Query: 251 EHSSRNHCTKFRCDNCSVRR-HS 186
           +++ + HCTKF C++C V   HS
Sbjct: 340 KNNLKEHCTKFECNSCLVHELHS 362


>SB_34739| Best HMM Match : DUF360 (HMM E-Value=0.39)
          Length = 1024

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 21/68 (30%), Positives = 36/68 (52%)
 Frame = +1

Query: 76  TFTKMCKTSRKLGITLQTASGTVQLLSLA*S*IHFKWLWRRTEQLSQRNLVQWLRELCSE 255
           +FT MCK  R+ G+ L+ A+  ++LL++  + +    L +   + + R  V  LR  C  
Sbjct: 389 SFTSMCKRLRRAGMKLKAATLMMELLNVLINPVLVTMLTKDLRKTAVRCAV--LRRGCGV 446

Query: 256 KFCTIYRL 279
           K  + YRL
Sbjct: 447 K-ASEYRL 453


>SB_48587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 21/68 (30%), Positives = 32/68 (47%)
 Frame = +3

Query: 285 NITQSLSKFGIEKSHDLLVCFLVTNEIDCRPEILPEIKGEQCSITELCNFTNLKDVKSVY 464
           ++  SL  F  +K   +L   L T E D  P+   E+KG    + E  N   L+   S+Y
Sbjct: 22  DLLSSLLLFHTDKERSILEVALATTEADF-PK---EVKGRLFDVLEPYNLRCLRLGTSLY 77

Query: 465 KLNNLKSD 488
           K+  L S+
Sbjct: 78  KVTGLISE 85


>SB_3014| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 216

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 28  ISLAF*ILKQKQH*KYTFTKMCKTSRKL 111
           +S+ F  L+Q  H  +T  K CKTSR L
Sbjct: 160 VSVVFIALQQITHQDFTRQKCCKTSRDL 187


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,929,390
Number of Sequences: 59808
Number of extensions: 291574
Number of successful extensions: 665
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)