BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS313E11f (521 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF039041-3|AAB94192.1| 183|Caenorhabditis elegans Hypothetical ... 78 3e-15 AC006696-3|AAF39984.1| 391|Caenorhabditis elegans Hypothetical ... 30 1.2 AC024757-1|AAF59450.3| 490|Caenorhabditis elegans Hypothetical ... 29 2.0 AL110477-5|CAB54329.1| 314|Caenorhabditis elegans Hypothetical ... 28 3.5 Z99276-2|CAB16482.1| 388|Caenorhabditis elegans Hypothetical pr... 28 4.7 U00049-6|AAM22030.1| 711|Caenorhabditis elegans Hypothetical pr... 28 4.7 AL023843-2|CAA19523.1| 388|Caenorhabditis elegans Hypothetical ... 28 4.7 Z99281-51|CAE18031.2| 281|Caenorhabditis elegans Hypothetical p... 27 6.2 AL021497-20|CAA16410.3| 1057|Caenorhabditis elegans Hypothetical... 27 6.2 AL021497-19|CAA16406.2| 989|Caenorhabditis elegans Hypothetical... 27 6.2 AF025472-3|AAB71075.2| 843|Caenorhabditis elegans Hypothetical ... 27 6.2 AF025472-1|AAY43980.1| 832|Caenorhabditis elegans Hypothetical ... 27 8.1 >AF039041-3|AAB94192.1| 183|Caenorhabditis elegans Hypothetical protein W03F8.4 protein. Length = 183 Score = 78.2 bits (184), Expect = 3e-15 Identities = 49/158 (31%), Positives = 82/158 (51%), Gaps = 3/158 (1%) Frame = +3 Query: 57 KTTLKIYLYKNVQNIEEIRNHITNGEWNCAIIKPSLILDPFQXXXXXXXXXXXXKFSTMV 236 + T ++ L+K+V+N E+ + G+ + A+I+ L+L+PF + M Sbjct: 19 RKTCRVCLFKDVKNAAELSQQLKEGKIDAALIRAELVLEPFVLLAAANRAVHQSAHNRMS 78 Query: 237 TRTVFGEILYNLSLTKNITQSLSKFGI-EKSHDLLVCFLVTNEIDCRPEILPEIKGEQCS 413 R++ E++Y+LS ++NIT SL FGI E S ++ + ++ IKG Sbjct: 79 CRSLAAELVYSLSPSRNITDSLVTFGIAEHSTAIIAAIFDDDSGKAMKKLAKAIKGTPVP 138 Query: 414 ITE-LCNFTNLKDVKSVYKLNN-LKSDEGLLDIIVSRM 521 + E L F N+ +K VY++ N +EGL D IVSRM Sbjct: 139 LMEGLPKFANVNMIKKVYQVGNPAFVEEGLSDHIVSRM 176 >AC006696-3|AAF39984.1| 391|Caenorhabditis elegans Hypothetical protein W08E12.7 protein. Length = 391 Score = 29.9 bits (64), Expect = 1.2 Identities = 14/40 (35%), Positives = 25/40 (62%) Frame = +3 Query: 267 NLSLTKNITQSLSKFGIEKSHDLLVCFLVTNEIDCRPEIL 386 N ++TKNI ++ ++FG+ ++L L NEID +I+ Sbjct: 174 NTTITKNIDKTAAEFGLTPIENMLSHQLERNEIDGEKKII 213 >AC024757-1|AAF59450.3| 490|Caenorhabditis elegans Hypothetical protein Y37E11AL.5 protein. Length = 490 Score = 29.1 bits (62), Expect = 2.0 Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 1/83 (1%) Frame = -1 Query: 422 FCNRTLFTFYFGKYFRSAIYFICN*EAYE*IMAFFYSKLA*TLCYIFGKR*IVQ-NFSEH 246 FC+ L F+F ++ AI+F C + + ++AFF++ Y+F R ++Q F + Sbjct: 351 FCS-ALLLFFFREHSPMAIFFFCLFQFFHVVIAFFFAS------YLFRLRFLLQRGFDSN 403 Query: 245 SSRNHCTKFRCDNCSVRRHSHLK 177 S + + R + ++ H K Sbjct: 404 DSTDSLERKRDISRALLEHVDTK 426 >AL110477-5|CAB54329.1| 314|Caenorhabditis elegans Hypothetical protein Y113G7B.7 protein. Length = 314 Score = 28.3 bits (60), Expect = 3.5 Identities = 15/42 (35%), Positives = 25/42 (59%) Frame = +3 Query: 372 RPEILPEIKGEQCSITELCNFTNLKDVKSVYKLNNLKSDEGL 497 +P +L EI G +C L NFTN+ +V ++++L K + L Sbjct: 178 KPRVLEEI-GIRC----LANFTNISEVSNLFELEQWKKAKSL 214 >Z99276-2|CAB16482.1| 388|Caenorhabditis elegans Hypothetical protein Y52D3.1a protein. Length = 388 Score = 27.9 bits (59), Expect = 4.7 Identities = 11/32 (34%), Positives = 19/32 (59%) Frame = -2 Query: 346 KHTSKSWLFSIPNLLKLCVIFLVSDKLYKISP 251 K +S L PN+++LC F+ +Y+I+P Sbjct: 97 KESSNLRLMHHPNIIELCECFVYERSIYQITP 128 >U00049-6|AAM22030.1| 711|Caenorhabditis elegans Hypothetical protein C18F10.2 protein. Length = 711 Score = 27.9 bits (59), Expect = 4.7 Identities = 12/40 (30%), Positives = 20/40 (50%) Frame = -1 Query: 269 IVQNFSEHSSRNHCTKFRCDNCSVRRHSHLKWI*DQARLN 150 I Q F EH K RC+NC+ + + + DQ +++ Sbjct: 285 IGQFFGEHPRSKRTPKPRCENCTEEEYEDVTPLSDQVKMD 324 >AL023843-2|CAA19523.1| 388|Caenorhabditis elegans Hypothetical protein Y52D3.1a protein. Length = 388 Score = 27.9 bits (59), Expect = 4.7 Identities = 11/32 (34%), Positives = 19/32 (59%) Frame = -2 Query: 346 KHTSKSWLFSIPNLLKLCVIFLVSDKLYKISP 251 K +S L PN+++LC F+ +Y+I+P Sbjct: 97 KESSNLRLMHHPNIIELCECFVYERSIYQITP 128 >Z99281-51|CAE18031.2| 281|Caenorhabditis elegans Hypothetical protein Y57G11C.48 protein. Length = 281 Score = 27.5 bits (58), Expect = 6.2 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 3/47 (6%) Frame = +3 Query: 333 LLVCFLVTNEIDCRPEILPE---IKGEQCSITELCNFTNLKDVKSVY 464 L+ CFL +NE + + +LP+ I +I +L +N K + S++ Sbjct: 184 LIECFLYSNETNLKTIVLPKLIVITDAITAIVQLLRVSNTKSLSSIH 230 >AL021497-20|CAA16410.3| 1057|Caenorhabditis elegans Hypothetical protein Y51A2D.7b protein. Length = 1057 Score = 27.5 bits (58), Expect = 6.2 Identities = 11/31 (35%), Positives = 17/31 (54%) Frame = +1 Query: 175 HFKWLWRRTEQLSQRNLVQWLRELCSEKFCT 267 HF W+W L Q +++ L E +E+F T Sbjct: 212 HFSWIWLHIATLLQGSIITHLLESGAEQFRT 242 >AL021497-19|CAA16406.2| 989|Caenorhabditis elegans Hypothetical protein Y51A2D.7a protein. Length = 989 Score = 27.5 bits (58), Expect = 6.2 Identities = 11/31 (35%), Positives = 17/31 (54%) Frame = +1 Query: 175 HFKWLWRRTEQLSQRNLVQWLRELCSEKFCT 267 HF W+W L Q +++ L E +E+F T Sbjct: 212 HFSWIWLHIATLLQGSIITHLLESGAEQFRT 242 >AF025472-3|AAB71075.2| 843|Caenorhabditis elegans Hypothetical protein ZK250.6 protein. Length = 843 Score = 27.5 bits (58), Expect = 6.2 Identities = 12/40 (30%), Positives = 20/40 (50%) Frame = +3 Query: 15 MKLEHFTCVLDPETKTTLKIYLYKNVQNIEEIRNHITNGE 134 +K+ + C+ KT + +NV NI E ++TN E Sbjct: 389 IKISNVPCIAPKNLKTFMLNQTVRNVSNIREGNKYLTNTE 428 >AF025472-1|AAY43980.1| 832|Caenorhabditis elegans Hypothetical protein ZK250.5b protein. Length = 832 Score = 27.1 bits (57), Expect = 8.1 Identities = 13/40 (32%), Positives = 20/40 (50%) Frame = +3 Query: 15 MKLEHFTCVLDPETKTTLKIYLYKNVQNIEEIRNHITNGE 134 +K+ + TC+ KT + +NV NI E + TN E Sbjct: 63 IKISNITCIARKNLKTFMLNKTVRNVSNIREGSRYHTNTE 102 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,565,381 Number of Sequences: 27780 Number of extensions: 237117 Number of successful extensions: 670 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 662 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 669 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 1017709248 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -