Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313E11f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34412.1 68417.m04888 expressed protein                             47   9e-06
At2g40990.1 68415.m05063 zinc finger (DHHC type) family protein ...    29   2.5  
At5g18310.2 68418.m02155 expressed protein predicted proteins, D...    27   5.8  
At5g18310.1 68418.m02154 expressed protein predicted proteins, D...    27   5.8  
At1g20110.1 68414.m02516 zinc finger (FYVE type) family protein ...    27   5.8  
At1g43245.1 68414.m04985 expressed protein                             27   7.7  

>At4g34412.1 68417.m04888 expressed protein
          Length = 143

 Score = 46.8 bits (106), Expect = 9e-06
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
 Frame = +3

Query: 39  VLDPETKTTLKIYLYKNVQNIEEIRNHITNGEWNCAI--IKPSLILDPFQXXXXXXXXXX 212
           V + +   TL + L+  V N +E+ N + +G     +  +  SLI D F           
Sbjct: 3   VFNLDRGNTLSVSLFSGVTNSKELLNSMLDGSLKLEVSFLNASLIPDIFPLLAAAQKALI 62

Query: 213 XXKFSTMVTRTVFGEILYNLSLTKNITQSLSKFGIEKS 326
                ++ TRT+  E++YN S +K+IT+SL + GI ++
Sbjct: 63  SKSRDSLSTRTLHSELVYNYSGSKHITESLKRCGISEN 100


>At2g40990.1 68415.m05063 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 386

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -1

Query: 236 NHCTKFRCDNCSVRRHSHLKWI*DQARLNNCTVPLAVCNVIPNFLDVLHIFV 81
           +HC+   C+NC  R   H  W+     L N   P  +C +  + L  L++FV
Sbjct: 149 SHCSI--CNNCVQRFDHHCPWVGQCIALRN--YPYFICFISTSTLLCLYVFV 196


>At5g18310.2 68418.m02155 expressed protein predicted proteins,
           Drosophila melanogaster
          Length = 167

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 207 LLCSPPQPLEMDLRSS*A**LHSSTRR 127
           L C PP+P++ DL       +HSSTR+
Sbjct: 128 LTCKPPKPVDEDLYKIPPEFIHSSTRK 154


>At5g18310.1 68418.m02154 expressed protein predicted proteins,
           Drosophila melanogaster
          Length = 139

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 207 LLCSPPQPLEMDLRSS*A**LHSSTRR 127
           L C PP+P++ DL       +HSSTR+
Sbjct: 100 LTCKPPKPVDEDLYKIPPEFIHSSTRK 126


>At1g20110.1 68414.m02516 zinc finger (FYVE type) family protein
           contains Pfam profile: PF01363 FYVE zinc finger
          Length = 601

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 39  VLDPETKTTLKIYLYKNVQNIEEIRNHI 122
           +LDP T  TL+IY  +N+   E++ + I
Sbjct: 343 MLDPSTSRTLRIYPLENITRCEKLDSSI 370


>At1g43245.1 68414.m04985 expressed protein
          Length = 558

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 354 TNEIDCRPEILPEIKGEQCSITELCNFTNLKDVKSVYKLNNLKSDEGLL 500
           TN     PEI P +  +  +   L N T +    S ++LNNL ++  LL
Sbjct: 63  TNSPQFPPEITPILPSDIRTSLHLLNSTAVDTSSSPHRLNNLLTNHHLL 111


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,505,790
Number of Sequences: 28952
Number of extensions: 201376
Number of successful extensions: 561
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)