Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313E08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    25   5.2  
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha...    25   5.2  
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|...    25   6.8  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   9.0  

>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 241 ISSFPRLIYFMKYNFSIRVHIFL 173
           + SFP L+  +KY F+I   +FL
Sbjct: 491 LKSFPHLVNALKYIFNILAQMFL 513


>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
           Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 382 NPPNNCQTGPFGXTXWEW 435
           +PP++C  GP G   + W
Sbjct: 16  DPPSSCSAGPVGDDLFHW 33


>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 684

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 421 SXQRGRFGNYWGD 383
           S +RGRFGN+W +
Sbjct: 290 SKRRGRFGNWWAN 302


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 203 IFHEIYESGKTGNPPGI 253
           + + +Y SG TGNP G+
Sbjct: 361 VAYVLYTSGSTGNPKGV 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,688,125
Number of Sequences: 5004
Number of extensions: 28857
Number of successful extensions: 51
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)