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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313E08f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)                   31   0.44 
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.44 
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.8  
SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)                     28   5.4  
SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05)                 28   5.4  
SB_33407| Best HMM Match : UQ_con (HMM E-Value=0)                      28   5.4  

>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
          Length = 229

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = -2

Query: 328 KFHFFPIXWEENIPFFPHHF*X*AGNPWRISSF 230
           K HF+ +    NI FFP HF   AG P R S F
Sbjct: 115 KIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDF 147



 Score = 30.3 bits (65), Expect = 1.0
 Identities = 33/140 (23%), Positives = 46/140 (32%), Gaps = 3/140 (2%)
 Frame = -1

Query: 434 HSXXVXPKGPVWQLLGGXIXXIXFFXGXSIKXXXLKIPFFSNFXGGKYTIFPXPFLGLSW 255
           H   V   G V+ +  G         G        KI F+  F G   T FP  FLGL+ 
Sbjct: 80  HFHYVLSMGAVFAIFAGFYFWFGKITGYCYNELYGKIHFWIMFIGVNITFFPQHFLGLAG 139

Query: 254 ESLEDFQFSQTHIFHEI*FLH*GSYXXXXXXXXXXXXXXXXXINQRINLFSLNLPSS--- 84
                  F+  +    +      +                     +   +  N  SS   
Sbjct: 140 FPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVENTGSSWPS 199

Query: 83  IE*YQNLPPAEHSYNELPIL 24
           +E  Q  PPA H+YNELP +
Sbjct: 200 LEWVQQSPPALHTYNELPFV 219


>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = -2

Query: 328 KFHFFPIXWEENIPFFPHHF*X*AGNPWRISSF 230
           K HF+ +    NI FFP HF   AG P R S F
Sbjct: 29  KIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDF 61



 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 86  SIE*YQNLPPAEHSYNELPIL 24
           S+E  Q  PPA H+YNELP +
Sbjct: 113 SLEWVQQSPPALHTYNELPFV 133


>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 86  SIE*YQNLPPAEHSYNELPIL 24
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 86  SIE*YQNLPPAEHSYNELPIL 24
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 86  SIE*YQNLPPAEHSYNELPIL 24
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 86  SIE*YQNLPPAEHSYNELPIL 24
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 86  SIE*YQNLPPAEHSYNELPIL 24
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)
          Length = 319

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 97  ISHHQLNDIKIYHQQNIHIMNYQF 26
           I+HHQ + I I H Q+  I+NY +
Sbjct: 296 INHHQSSSIIINHHQSSSIINYYY 319


>SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05)
          Length = 200

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 382 NPPNNCQTGPFGXTXWEW 435
           +PP NC  GP G   +EW
Sbjct: 150 DPPPNCSAGPKGDDLYEW 167


>SB_33407| Best HMM Match : UQ_con (HMM E-Value=0)
          Length = 226

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 382 NPPNNCQTGPFGXTXWEW 435
           +PP NC  GP G   +EW
Sbjct: 110 DPPPNCSAGPKGDDLYEW 127


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,879,689
Number of Sequences: 59808
Number of extensions: 194141
Number of successful extensions: 268
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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