Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313E08f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10) 31 0.44
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.44
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_13289| Best HMM Match : DUF543 (HMM E-Value=10) 28 5.4
SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05) 28 5.4
SB_33407| Best HMM Match : UQ_con (HMM E-Value=0) 28 5.4
>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
Length = 229
Score = 31.5 bits (68), Expect = 0.44
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = -2
Query: 328 KFHFFPIXWEENIPFFPHHF*X*AGNPWRISSF 230
K HF+ + NI FFP HF AG P R S F
Sbjct: 115 KIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDF 147
Score = 30.3 bits (65), Expect = 1.0
Identities = 33/140 (23%), Positives = 46/140 (32%), Gaps = 3/140 (2%)
Frame = -1
Query: 434 HSXXVXPKGPVWQLLGGXIXXIXFFXGXSIKXXXLKIPFFSNFXGGKYTIFPXPFLGLSW 255
H V G V+ + G G KI F+ F G T FP FLGL+
Sbjct: 80 HFHYVLSMGAVFAIFAGFYFWFGKITGYCYNELYGKIHFWIMFIGVNITFFPQHFLGLAG 139
Query: 254 ESLEDFQFSQTHIFHEI*FLH*GSYXXXXXXXXXXXXXXXXXINQRINLFSLNLPSS--- 84
F+ + + + + + N SS
Sbjct: 140 FPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVENTGSSWPS 199
Query: 83 IE*YQNLPPAEHSYNELPIL 24
+E Q PPA H+YNELP +
Sbjct: 200 LEWVQQSPPALHTYNELPFV 219
>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 31.5 bits (68), Expect = 0.44
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = -2
Query: 328 KFHFFPIXWEENIPFFPHHF*X*AGNPWRISSF 230
K HF+ + NI FFP HF AG P R S F
Sbjct: 29 KIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDF 61
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 86 SIE*YQNLPPAEHSYNELPIL 24
S+E Q PPA H+YNELP +
Sbjct: 113 SLEWVQQSPPALHTYNELPFV 133
>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 86 SIE*YQNLPPAEHSYNELPIL 24
S+E Q PPA H+YNELP +
Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87
>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 86 SIE*YQNLPPAEHSYNELPIL 24
S+E Q PPA H+YNELP +
Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87
>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 86 SIE*YQNLPPAEHSYNELPIL 24
S+E Q PPA H+YNELP +
Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87
>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 86 SIE*YQNLPPAEHSYNELPIL 24
S+E Q PPA H+YNELP +
Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87
>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 86 SIE*YQNLPPAEHSYNELPIL 24
S+E Q PPA H+YNELP +
Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87
>SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)
Length = 319
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 97 ISHHQLNDIKIYHQQNIHIMNYQF 26
I+HHQ + I I H Q+ I+NY +
Sbjct: 296 INHHQSSSIIINHHQSSSIINYYY 319
>SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05)
Length = 200
Score = 27.9 bits (59), Expect = 5.4
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 382 NPPNNCQTGPFGXTXWEW 435
+PP NC GP G +EW
Sbjct: 150 DPPPNCSAGPKGDDLYEW 167
>SB_33407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 226
Score = 27.9 bits (59), Expect = 5.4
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 382 NPPNNCQTGPFGXTXWEW 435
+PP NC GP G +EW
Sbjct: 110 DPPPNCSAGPKGDDLYEW 127
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,879,689
Number of Sequences: 59808
Number of extensions: 194141
Number of successful extensions: 268
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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