BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS313E08f (521 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10) 31 0.44 SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.44 SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8 SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8 SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8 SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8 SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8 SB_13289| Best HMM Match : DUF543 (HMM E-Value=10) 28 5.4 SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05) 28 5.4 SB_33407| Best HMM Match : UQ_con (HMM E-Value=0) 28 5.4 >SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10) Length = 229 Score = 31.5 bits (68), Expect = 0.44 Identities = 16/33 (48%), Positives = 18/33 (54%) Frame = -2 Query: 328 KFHFFPIXWEENIPFFPHHF*X*AGNPWRISSF 230 K HF+ + NI FFP HF AG P R S F Sbjct: 115 KIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDF 147 Score = 30.3 bits (65), Expect = 1.0 Identities = 33/140 (23%), Positives = 46/140 (32%), Gaps = 3/140 (2%) Frame = -1 Query: 434 HSXXVXPKGPVWQLLGGXIXXIXFFXGXSIKXXXLKIPFFSNFXGGKYTIFPXPFLGLSW 255 H V G V+ + G G KI F+ F G T FP FLGL+ Sbjct: 80 HFHYVLSMGAVFAIFAGFYFWFGKITGYCYNELYGKIHFWIMFIGVNITFFPQHFLGLAG 139 Query: 254 ESLEDFQFSQTHIFHEI*FLH*GSYXXXXXXXXXXXXXXXXXINQRINLFSLNLPSS--- 84 F+ + + + + + N SS Sbjct: 140 FPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVENTGSSWPS 199 Query: 83 IE*YQNLPPAEHSYNELPIL 24 +E Q PPA H+YNELP + Sbjct: 200 LEWVQQSPPALHTYNELPFV 219 >SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 143 Score = 31.5 bits (68), Expect = 0.44 Identities = 16/33 (48%), Positives = 18/33 (54%) Frame = -2 Query: 328 KFHFFPIXWEENIPFFPHHF*X*AGNPWRISSF 230 K HF+ + NI FFP HF AG P R S F Sbjct: 29 KIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDF 61 Score = 29.5 bits (63), Expect = 1.8 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = -1 Query: 86 SIE*YQNLPPAEHSYNELPIL 24 S+E Q PPA H+YNELP + Sbjct: 113 SLEWVQQSPPALHTYNELPFV 133 >SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 95 Score = 29.5 bits (63), Expect = 1.8 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = -1 Query: 86 SIE*YQNLPPAEHSYNELPIL 24 S+E Q PPA H+YNELP + Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87 >SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 95 Score = 29.5 bits (63), Expect = 1.8 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = -1 Query: 86 SIE*YQNLPPAEHSYNELPIL 24 S+E Q PPA H+YNELP + Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87 >SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 95 Score = 29.5 bits (63), Expect = 1.8 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = -1 Query: 86 SIE*YQNLPPAEHSYNELPIL 24 S+E Q PPA H+YNELP + Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87 >SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 95 Score = 29.5 bits (63), Expect = 1.8 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = -1 Query: 86 SIE*YQNLPPAEHSYNELPIL 24 S+E Q PPA H+YNELP + Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87 >SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 95 Score = 29.5 bits (63), Expect = 1.8 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = -1 Query: 86 SIE*YQNLPPAEHSYNELPIL 24 S+E Q PPA H+YNELP + Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87 >SB_13289| Best HMM Match : DUF543 (HMM E-Value=10) Length = 319 Score = 27.9 bits (59), Expect = 5.4 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = -2 Query: 97 ISHHQLNDIKIYHQQNIHIMNYQF 26 I+HHQ + I I H Q+ I+NY + Sbjct: 296 INHHQSSSIIINHHQSSSIINYYY 319 >SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05) Length = 200 Score = 27.9 bits (59), Expect = 5.4 Identities = 9/18 (50%), Positives = 11/18 (61%) Frame = +1 Query: 382 NPPNNCQTGPFGXTXWEW 435 +PP NC GP G +EW Sbjct: 150 DPPPNCSAGPKGDDLYEW 167 >SB_33407| Best HMM Match : UQ_con (HMM E-Value=0) Length = 226 Score = 27.9 bits (59), Expect = 5.4 Identities = 9/18 (50%), Positives = 11/18 (61%) Frame = +1 Query: 382 NPPNNCQTGPFGXTXWEW 435 +PP NC GP G +EW Sbjct: 110 DPPPNCSAGPKGDDLYEW 127 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,879,689 Number of Sequences: 59808 Number of extensions: 194141 Number of successful extensions: 268 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 252 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 268 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1172759136 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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