Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313E07f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1061 + 8562039-8562485                                           28   4.0  
11_06_0172 - 20877029-20878049,20880129-20880400                       28   5.2  
08_02_0594 + 19089094-19090049,19090673-19091162                       27   6.9  
12_02_0801 + 23308993-23309091,23309503-23309604,23310212-233103...    27   9.1  
10_01_0207 - 2219247-2219902,2220203-2221156,2223739-2224897           27   9.1  
08_02_1616 + 28260204-28262555                                         27   9.1  
04_04_0548 + 26172595-26173189,26173346-26173473,26173606-261738...    27   9.1  
03_01_0013 - 105281-105552,105762-105838,105839-106524,106655-10...    27   9.1  

>06_01_1061 + 8562039-8562485
          Length = 148

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 19/44 (43%), Positives = 20/44 (45%)
 Frame = -1

Query: 383 HRHGSRAGTCCRRCEDPLLCTQRRI*DERDSRRGGRHVRDDVHD 252
           HR GS  G    R   PL C +     E  SR GGR  R DV D
Sbjct: 24  HRWGSVEGEARPRATLPLRCRRWWWRSEPTSRGGGRGGRRDVGD 67


>11_06_0172 - 20877029-20878049,20880129-20880400
          Length = 430

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -1

Query: 410 ADCTRPSRRHRHGSRAGTCCRRCEDPLLCTQRRI*DERDSRRGGR 276
           A C   + R++ G R+  CC R +D     + R+ DER  R   R
Sbjct: 30  AGCRIAAARNQEGCRSHGCCHRLQDER--RRHRLQDERRRRLSAR 72


>08_02_0594 + 19089094-19090049,19090673-19091162
          Length = 481

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = -1

Query: 449 RCTQQS*RYHQPRADCTRPSRRHRHGSRAGTCCRRCED 336
           RC  Q  R   P+  C  PS   +H    G  CR  ED
Sbjct: 16  RCIVQEDRKRAPKLACCPPSSEQQHVKSNGN-CRNSED 52


>12_02_0801 +
           23308993-23309091,23309503-23309604,23310212-23310388,
           23310473-23310715,23310896-23310947,23310998-23311145,
           23311240-23311321,23311462-23311557,23311641-23311742,
           23312048-23312164,23312329-23312400
          Length = 429

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 371 TRDGDVVKGVYSLHEADGTVRTVEYSADKHSGF 469
           T+ GD ++GVYS+ + D +V +++  AD    F
Sbjct: 210 TKIGDFIRGVYSVFQ-DNSVHSIDLLADLDFSF 241


>10_01_0207 - 2219247-2219902,2220203-2221156,2223739-2224897
          Length = 922

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 45  RLDLKRAMAMEDTTTAMRFHPKASYYTRVTDMN--ISHITLQPTTKY 179
           R+D  ++  + D     R HP  S+YT   DM   +S +T +  T++
Sbjct: 359 RVDSMQSKKLFDCNVVTRCHPFTSFYTAGLDMEHVVSAVTGELVTRF 405


>08_02_1616 + 28260204-28262555
          Length = 783

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -2

Query: 178 YLVVGWSVMWLMFMSVTRV*YDALG*NRMAVVVSSMAMALLRS 50
           YL++G S   L+F +V  + +D +G N    V   M  A+LR+
Sbjct: 244 YLLIGMSSAALLFNTVQHLFWDTVGENLTKRVRERMLAAVLRN 286


>04_04_0548 +
           26172595-26173189,26173346-26173473,26173606-26173866,
           26173988-26174250,26176748-26177099
          Length = 532

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 356 CCRRCEDPLLCTQRRI*DE--RDSRRGGRHV 270
           C R C D ++   RR+ DE  RD   GGR +
Sbjct: 447 CGRACVDSIMARHRRVADEACRDGGGGGRGI 477


>03_01_0013 -
           105281-105552,105762-105838,105839-106524,106655-106738,
           106914-107114,107202-107309,107766-107855,108505-108551,
           109096-109276,110010-110135,110220-110386,110877-111072
          Length = 744

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 18/64 (28%), Positives = 27/64 (42%)
 Frame = -1

Query: 416 PRADCTRPSRRHRHGSRAGTCCRRCEDPLLCTQRRI*DERDSRRGGRHVRDDVHDRGVAL 237
           P+AD     R HR G       RR E  L  +   I +E  +   G++V ++  D    +
Sbjct: 382 PQADKQALQRAHRIGQLNNVIMRRAERKLKLSHSVIGEEDATYGKGKYVENEASDMRSII 441

Query: 236 NELH 225
             LH
Sbjct: 442 FGLH 445


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,598,012
Number of Sequences: 37544
Number of extensions: 229077
Number of successful extensions: 677
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)