BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS313E07f (521 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3 SB_41552| Best HMM Match : RVT_1 (HMM E-Value=5.4e-32) 29 3.1 SB_20452| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1 SB_59015| Best HMM Match : Arif-1 (HMM E-Value=0.62) 27 9.4 SB_39107| Best HMM Match : Lyase_8 (HMM E-Value=0.016) 27 9.4 SB_38149| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4 >SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2014 Score = 29.1 bits (62), Expect = 2.3 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = +2 Query: 392 KGVYSLHEADGTVRTVEYSADKHSGF 469 KG Y H+ DG RT+EY + G+ Sbjct: 1742 KGSYDTHDVDGRRRTIEYYSGTPQGY 1767 >SB_41552| Best HMM Match : RVT_1 (HMM E-Value=5.4e-32) Length = 1241 Score = 28.7 bits (61), Expect = 3.1 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%) Frame = -3 Query: 513 GTTW*A*PSRLTXALNPLCLSALYSTVLTVPSASCRLYTPF--TTSPSRVSCWYLLSPV* 340 G W +T +N + + +TV + +A+ + T + +TSPS V Y L+P Sbjct: 890 GKPWVDPTQNITAVVNTTLATLMNTTVAPMTAAAMNMTTAYANSTSPSSVEACYKLTPYW 949 Query: 339 GS 334 G+ Sbjct: 950 GN 951 >SB_20452| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1324 Score = 28.3 bits (60), Expect = 4.1 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = +3 Query: 24 PLFWPQSRLDLKRAMAMEDTTTAMRFHPKASYYTRVTDM 140 PL P R+ +KR + TTT + F P+ YT TD+ Sbjct: 184 PLNAPNMRI-VKRKTSSNSTTTPVTFGPRPRAYTDPTDL 221 >SB_59015| Best HMM Match : Arif-1 (HMM E-Value=0.62) Length = 526 Score = 27.1 bits (57), Expect = 9.4 Identities = 14/33 (42%), Positives = 18/33 (54%) Frame = -1 Query: 215 LHDHGVPRAVLKVFGGGLERDVADVHVRDSCVI 117 L D G +AV KV G RDV+ H+ C+I Sbjct: 10 LQDLGGGQAVTKVNGVRTNRDVSGSHISGPCLI 42 >SB_39107| Best HMM Match : Lyase_8 (HMM E-Value=0.016) Length = 872 Score = 27.1 bits (57), Expect = 9.4 Identities = 15/58 (25%), Positives = 24/58 (41%) Frame = +2 Query: 323 YKVEDPHTGDNKYQHETRDGDVVKGVYSLHEADGTVRTVEYSADKHSGFNAXVRREGH 496 YK +P D + +DG KG Y L+ G++ +++ K G GH Sbjct: 135 YKTSNPTISDTTLEKRLQDGSPSKGSYYLNTI-GSLDILQWVVGKAGGAAPETTPSGH 191 >SB_38149| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 141 Score = 27.1 bits (57), Expect = 9.4 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 6/48 (12%) Frame = +2 Query: 338 PHTGDNKYQHETRDG------DVVKGVYSLHEADGTVRTVEYSADKHS 463 P GD+KY HE+R D VK S +D TV+ KHS Sbjct: 3 PSKGDHKYDHESRQSNTENIVDTVKSSSSSSSSDNQAVTVD--TPKHS 48 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,289,490 Number of Sequences: 59808 Number of extensions: 256394 Number of successful extensions: 751 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 685 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 751 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1172759136 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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