Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313E07f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_41552| Best HMM Match : RVT_1 (HMM E-Value=5.4e-32)                 29   3.1  
SB_20452| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_59015| Best HMM Match : Arif-1 (HMM E-Value=0.62)                   27   9.4  
SB_39107| Best HMM Match : Lyase_8 (HMM E-Value=0.016)                 27   9.4  
SB_38149| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2014

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 392  KGVYSLHEADGTVRTVEYSADKHSGF 469
            KG Y  H+ DG  RT+EY +    G+
Sbjct: 1742 KGSYDTHDVDGRRRTIEYYSGTPQGY 1767


>SB_41552| Best HMM Match : RVT_1 (HMM E-Value=5.4e-32)
          Length = 1241

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -3

Query: 513  GTTW*A*PSRLTXALNPLCLSALYSTVLTVPSASCRLYTPF--TTSPSRVSCWYLLSPV* 340
            G  W      +T  +N    + + +TV  + +A+  + T +  +TSPS V   Y L+P  
Sbjct: 890  GKPWVDPTQNITAVVNTTLATLMNTTVAPMTAAAMNMTTAYANSTSPSSVEACYKLTPYW 949

Query: 339  GS 334
            G+
Sbjct: 950  GN 951


>SB_20452| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1324

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 24  PLFWPQSRLDLKRAMAMEDTTTAMRFHPKASYYTRVTDM 140
           PL  P  R+ +KR  +   TTT + F P+   YT  TD+
Sbjct: 184 PLNAPNMRI-VKRKTSSNSTTTPVTFGPRPRAYTDPTDL 221


>SB_59015| Best HMM Match : Arif-1 (HMM E-Value=0.62)
          Length = 526

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 215 LHDHGVPRAVLKVFGGGLERDVADVHVRDSCVI 117
           L D G  +AV KV G    RDV+  H+   C+I
Sbjct: 10  LQDLGGGQAVTKVNGVRTNRDVSGSHISGPCLI 42


>SB_39107| Best HMM Match : Lyase_8 (HMM E-Value=0.016)
          Length = 872

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/58 (25%), Positives = 24/58 (41%)
 Frame = +2

Query: 323 YKVEDPHTGDNKYQHETRDGDVVKGVYSLHEADGTVRTVEYSADKHSGFNAXVRREGH 496
           YK  +P   D   +   +DG   KG Y L+   G++  +++   K  G        GH
Sbjct: 135 YKTSNPTISDTTLEKRLQDGSPSKGSYYLNTI-GSLDILQWVVGKAGGAAPETTPSGH 191


>SB_38149| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
 Frame = +2

Query: 338 PHTGDNKYQHETRDG------DVVKGVYSLHEADGTVRTVEYSADKHS 463
           P  GD+KY HE+R        D VK   S   +D    TV+    KHS
Sbjct: 3   PSKGDHKYDHESRQSNTENIVDTVKSSSSSSSSDNQAVTVD--TPKHS 48


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,289,490
Number of Sequences: 59808
Number of extensions: 256394
Number of successful extensions: 751
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)