BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS313E07f (521 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g07260.1 68418.m00828 homeobox protein-related contains weak ... 29 1.9 At1g68190.1 68414.m07790 zinc finger (B-box type) family protein 29 2.5 At1g65985.1 68414.m07487 expressed protein contains Pfam profile... 29 2.5 At3g18210.1 68416.m02316 oxidoreductase, 2OG-Fe(II) oxygenase fa... 28 3.3 At2g35170.1 68415.m04314 MORN (Membrane Occupation and Recogniti... 27 5.8 >At5g07260.1 68418.m00828 homeobox protein-related contains weak similarity to Homeobox protein FWA (Swiss-Prot:Q9FVI6) [Arabidopsis thaliana] Length = 541 Score = 29.1 bits (62), Expect = 1.9 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Frame = -1 Query: 422 HQPRADCTRPSRRHR-HGSRAGTCCRRCEDPLLCTQRR 312 HQ D R R R H + + CR CE+P++ T+ R Sbjct: 12 HQQN-DLLRAENRARIHAMTSPSICRSCEEPIISTEER 48 >At1g68190.1 68414.m07790 zinc finger (B-box type) family protein Length = 356 Score = 28.7 bits (61), Expect = 2.5 Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 3/43 (6%) Frame = -1 Query: 173 GGGLERDVADVHVRDSCVIRCFGMKP---HGCGRVLHGHGPLE 54 G L + D CV+RCF K HGC HG G E Sbjct: 49 GRHLRTVLCDSCKNQPCVVRCFDHKMFLCHGCNDKFHGGGSSE 91 >At1g65985.1 68414.m07487 expressed protein contains Pfam profile PF03140: Plant protein of unknown function Length = 456 Score = 28.7 bits (61), Expect = 2.5 Identities = 17/59 (28%), Positives = 28/59 (47%) Frame = -1 Query: 275 HVRDDVHDRGVALNELHGAILHDHGVPRAVLKVFGGGLERDVADVHVRDSCVIRCFGMK 99 H D D + +N+L +L ++ +P +L D H DS ++RCFG+K Sbjct: 144 HSDDRNLDFAIVMNDL---LLLENQLPYFILDSLFSFSMTKYLDSHTLDSFILRCFGLK 199 >At3g18210.1 68416.m02316 oxidoreductase, 2OG-Fe(II) oxygenase family protein contains Pfam domain PF03171 2OG-Fe(II) oxygenase superfamily Length = 394 Score = 28.3 bits (60), Expect = 3.3 Identities = 12/21 (57%), Positives = 13/21 (61%) Frame = -1 Query: 386 RHRHGSRAGTCCRRCEDPLLC 324 RHRHG+RA TC R L C Sbjct: 325 RHRHGARATTCGHRVNMLLWC 345 >At2g35170.1 68415.m04314 MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related low similarity to phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1 [Arabidopsis thaliana] GI:3702691; contains Pfam profile PF02493: MORN repeat Length = 484 Score = 27.5 bits (58), Expect = 5.8 Identities = 17/50 (34%), Positives = 23/50 (46%) Frame = +2 Query: 353 NKYQHETRDGDVVKGVYSLHEADGTVRTVEYSADKHSGFNAXVRREGHAH 502 ++Y E + G V G+ S H +G EY ADK GF GH + Sbjct: 321 SRYDGEFKWG-VKHGLGSYHFRNGDAYAGEYFADKMHGFGVYHFANGHKY 369 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,905,595 Number of Sequences: 28952 Number of extensions: 163916 Number of successful extensions: 403 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 400 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 403 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 957410176 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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