Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313E07f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g07260.1 68418.m00828 homeobox protein-related contains weak ...    29   1.9  
At1g68190.1 68414.m07790 zinc finger (B-box type) family protein       29   2.5  
At1g65985.1 68414.m07487 expressed protein contains Pfam profile...    29   2.5  
At3g18210.1 68416.m02316 oxidoreductase, 2OG-Fe(II) oxygenase fa...    28   3.3  
At2g35170.1 68415.m04314 MORN (Membrane Occupation and Recogniti...    27   5.8  

>At5g07260.1 68418.m00828 homeobox protein-related contains weak
           similarity to Homeobox protein FWA (Swiss-Prot:Q9FVI6)
           [Arabidopsis thaliana]
          Length = 541

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 422 HQPRADCTRPSRRHR-HGSRAGTCCRRCEDPLLCTQRR 312
           HQ   D  R   R R H   + + CR CE+P++ T+ R
Sbjct: 12  HQQN-DLLRAENRARIHAMTSPSICRSCEEPIISTEER 48


>At1g68190.1 68414.m07790 zinc finger (B-box type) family protein
          Length = 356

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
 Frame = -1

Query: 173 GGGLERDVADVHVRDSCVIRCFGMKP---HGCGRVLHGHGPLE 54
           G  L   + D      CV+RCF  K    HGC    HG G  E
Sbjct: 49  GRHLRTVLCDSCKNQPCVVRCFDHKMFLCHGCNDKFHGGGSSE 91


>At1g65985.1 68414.m07487 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 456

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = -1

Query: 275 HVRDDVHDRGVALNELHGAILHDHGVPRAVLKVFGGGLERDVADVHVRDSCVIRCFGMK 99
           H  D   D  + +N+L   +L ++ +P  +L            D H  DS ++RCFG+K
Sbjct: 144 HSDDRNLDFAIVMNDL---LLLENQLPYFILDSLFSFSMTKYLDSHTLDSFILRCFGLK 199


>At3g18210.1 68416.m02316 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein contains Pfam domain PF03171 2OG-Fe(II)
           oxygenase superfamily
          Length = 394

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 386 RHRHGSRAGTCCRRCEDPLLC 324
           RHRHG+RA TC  R    L C
Sbjct: 325 RHRHGARATTCGHRVNMLLWC 345


>At2g35170.1 68415.m04314 MORN (Membrane Occupation and Recognition
           Nexus) repeat-containing protein
           /phosphatidylinositol-4-phosphate 5-kinase-related low
           similarity to phosphatidylinositol-4-phosphate 5-kinase
           AtPIP5K1 [Arabidopsis thaliana] GI:3702691; contains
           Pfam profile PF02493: MORN repeat
          Length = 484

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +2

Query: 353 NKYQHETRDGDVVKGVYSLHEADGTVRTVEYSADKHSGFNAXVRREGHAH 502
           ++Y  E + G V  G+ S H  +G     EY ADK  GF       GH +
Sbjct: 321 SRYDGEFKWG-VKHGLGSYHFRNGDAYAGEYFADKMHGFGVYHFANGHKY 369


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,905,595
Number of Sequences: 28952
Number of extensions: 163916
Number of successful extensions: 403
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)