BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS313E04f (521 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g35000.1 68415.m04294 zinc finger (C3HC4-type RING finger) fa... 27 7.7 At2g34990.1 68415.m04293 zinc finger (C3HC4-type RING finger) fa... 27 7.7 At1g23980.1 68414.m03028 zinc finger (C3HC4-type RING finger) fa... 27 7.7 >At2g35000.1 68415.m04294 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097: Zinc finger, C3HC4 type (RING finger) Length = 378 Score = 27.1 bits (57), Expect = 7.7 Identities = 9/20 (45%), Positives = 13/20 (65%) Frame = -2 Query: 196 ITLCE*NEQLVLKLIPNCCH 137 + LCE + L+L+P CCH Sbjct: 137 VCLCEFEDDETLRLMPPCCH 156 >At2g34990.1 68415.m04293 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097: Zinc finger, C3HC4 type (RING finger) Length = 302 Score = 27.1 bits (57), Expect = 7.7 Identities = 8/20 (40%), Positives = 13/20 (65%) Frame = -2 Query: 196 ITLCE*NEQLVLKLIPNCCH 137 + +CE + L+L+P CCH Sbjct: 98 VCICEFEDHETLRLMPECCH 117 >At1g23980.1 68414.m03028 zinc finger (C3HC4-type RING finger) family protein low similarity to RING-H2 zinc finger protein ATL4 [Arabidopsis thaliana] GI:4928399; contains Pfam profile PF00097: Zinc finger, C3HC4 type (RING finger) Length = 369 Score = 27.1 bits (57), Expect = 7.7 Identities = 10/20 (50%), Positives = 14/20 (70%) Frame = -2 Query: 196 ITLCE*NEQLVLKLIPNCCH 137 + LCE +E L+L+PNC H Sbjct: 146 VCLCEFSEDDKLRLLPNCSH 165 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,452,775 Number of Sequences: 28952 Number of extensions: 134218 Number of successful extensions: 166 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 165 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 166 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 957410176 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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