Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313E04f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35000.1 68415.m04294 zinc finger (C3HC4-type RING finger) fa...    27   7.7  
At2g34990.1 68415.m04293 zinc finger (C3HC4-type RING finger) fa...    27   7.7  
At1g23980.1 68414.m03028 zinc finger (C3HC4-type RING finger) fa...    27   7.7  

>At2g35000.1 68415.m04294 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 378

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 196 ITLCE*NEQLVLKLIPNCCH 137
           + LCE  +   L+L+P CCH
Sbjct: 137 VCLCEFEDDETLRLMPPCCH 156


>At2g34990.1 68415.m04293 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 302

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 196 ITLCE*NEQLVLKLIPNCCH 137
           + +CE  +   L+L+P CCH
Sbjct: 98  VCICEFEDHETLRLMPECCH 117


>At1g23980.1 68414.m03028 zinc finger (C3HC4-type RING finger)
           family protein low similarity to RING-H2 zinc finger
           protein ATL4 [Arabidopsis thaliana] GI:4928399; contains
           Pfam profile PF00097: Zinc finger, C3HC4 type (RING
           finger)
          Length = 369

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 196 ITLCE*NEQLVLKLIPNCCH 137
           + LCE +E   L+L+PNC H
Sbjct: 146 VCLCEFSEDDKLRLLPNCSH 165


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,452,775
Number of Sequences: 28952
Number of extensions: 134218
Number of successful extensions: 166
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)