BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS313E03f (521 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 231 4e-62 SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 67 2e-12 SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 64 1e-11 SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 62 6e-11 SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 51 1e-07 SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 51 1e-07 SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 30 0.24 SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 29 0.32 SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 27 1.7 SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 26 3.9 SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 26 3.9 SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi... 26 3.9 SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 25 5.2 SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 5.2 SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyce... 25 6.8 SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 25 6.8 SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch... 25 9.0 SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 9.0 >SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit Cct2|Schizosaccharomyces pombe|chr 1|||Manual Length = 527 Score = 231 bits (566), Expect = 4e-62 Identities = 118/173 (68%), Positives = 138/173 (79%) Frame = +1 Query: 1 AKQALAEASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSG 180 A AL +S D+ + A R DLENIARTTLSSKILS +K HF +LAVDAVLRLKGS Sbjct: 133 AIDALRASSIDNSSD--PAKFRSDLENIARTTLSSKILSQNKNHFAQLAVDAVLRLKGST 190 Query: 181 NLKAIQIIKISGGLLEESFLDEGFLLNKKVGVHQPKKVENANILIANTPMDTDKIKVFGS 360 NL IQIIKI GG L++SFLDEGF+LNK +GV+ PK +ENANILIANT MDTDK+KVFG+ Sbjct: 191 NLDNIQIIKILGGKLDDSFLDEGFILNKTIGVNCPKVMENANILIANTAMDTDKVKVFGA 250 Query: 361 TIKVDSMAKIAELEVAEKEKMKDKVNKILAHKCNVFINRQLIYNYPEQLFADA 519 ++VD+ K+AELE AE+EKMK KV KI +H N FINRQLIYN+PEQLFADA Sbjct: 251 RVRVDTTGKLAELERAEREKMKAKVEKIKSHNINCFINRQLIYNWPEQLFADA 303 >SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit Cct1|Schizosaccharomyces pombe|chr 2|||Manual Length = 556 Score = 66.9 bits (156), Expect = 2e-12 Identities = 46/142 (32%), Positives = 77/142 (54%), Gaps = 9/142 (6%) Frame = +1 Query: 73 LENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGN-------LKAIQIIKISGGLLEE 231 L N+A+T++SSKI+ N + F+ +AVDA+L +K S + +KA+ I+K G E Sbjct: 153 LINVAKTSMSSKIIGNDSDFFSTMAVDAMLSVKTSNSKGETRYPVKAVNILKAHGKSSRE 212 Query: 232 SFLDEGFLLNKKVGVHQPK-KVENANILIANTPMDTDKIKV-FGSTIKVDSMAKIAELEV 405 S L +G+ LN + K +V+NA I + + MD K K+ G + +D ++ ++ Sbjct: 213 SVLVKGYALNCTIASQAMKTRVQNAKIAVLD--MDLQKTKMALGVHVTIDDPDQLEKIRE 270 Query: 406 AEKEKMKDKVNKILAHKCNVFI 471 E ++V KIL NV + Sbjct: 271 REVMITLERVKKILNAGANVIL 292 >SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit Cct7|Schizosaccharomyces pombe|chr 2|||Manual Length = 558 Score = 64.1 bits (149), Expect = 1e-11 Identities = 48/161 (29%), Positives = 78/161 (48%), Gaps = 5/161 (3%) Frame = +1 Query: 49 NEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSG-NLKAIQIIKISGGLL 225 +E LR L A T ++SK++ ++ FTK+ VDAVL L N I I K+ GG + Sbjct: 151 DEGKLRDLLTKCASTAMNSKLIRSNSTFFTKMVVDAVLTLDQEDLNENMIGIKKVPGGAM 210 Query: 226 EESFLDEGFLLNKKVGV----HQPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIA 393 E+S L +G K QPK +N IL + ++ K + + ++VD + + Sbjct: 211 EDSLLVKGVAFKKTFSYAGFEQQPKFFKNPKILCLDVELEL-KAEKDNAEVRVDKVQEYQ 269 Query: 394 ELEVAEKEKMKDKVNKILAHKCNVFINRQLIYNYPEQLFAD 516 + AE + K+ I+A V +++ I + Q FAD Sbjct: 270 NIVDAEWRIIFSKLEAIVATGAKVVLSKLPIGDLATQYFAD 310 >SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit Cct5|Schizosaccharomyces pombe|chr 1|||Manual Length = 546 Score = 61.7 bits (143), Expect = 6e-11 Identities = 39/134 (29%), Positives = 72/134 (53%), Gaps = 5/134 (3%) Frame = +1 Query: 85 ARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGNLKA-IQIIKIS---GGLLEESFLDEGF 252 A+T+L SK++S +HF +AVDAVL + ++IK+ GG ++++ L +G Sbjct: 171 AKTSLGSKVVSKAHDHFANIAVDAVLSVADLQRKDVDFELIKVDGKVGGSVDDTKLVKGV 230 Query: 253 LLNKKVGVHQ-PKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEKMKD 429 +++K + Q P ++ENA I I P + K K + + S+++ L+ EKEK ++ Sbjct: 231 VVDKDMSHPQMPHRIENAKIAILTCPFEPPKPKT-KHKLDITSVSEFEALQAYEKEKFQE 289 Query: 430 KVNKILAHKCNVFI 471 + + N+ I Sbjct: 290 MIKHVKDAGANLVI 303 >SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit Cct6|Schizosaccharomyces pombe|chr 2|||Manual Length = 535 Score = 50.8 bits (116), Expect = 1e-07 Identities = 39/135 (28%), Positives = 70/135 (51%), Gaps = 4/135 (2%) Frame = +1 Query: 73 LENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSG---NLKAIQIIKISGGLLEESFLD 243 L N+A+T+LS+KI S E VDA+L ++ +L ++I+K+ ++ L Sbjct: 146 LLNVAKTSLSTKISSKVVESLAPAVVDAILTIRRPDEPIDLHMVEIMKMQNRSASDTQLI 205 Query: 244 EGFLLNKKV-GVHQPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEK 420 G LL+ PK+V+NA ILI N ++ +K ++ S + + L +E++ Sbjct: 206 RGLLLDHGARHPDMPKQVKNAYILILNVSLEYEKSEI-NSGFFYSTSEQRERLVESERKF 264 Query: 421 MKDKVNKILAHKCNV 465 + +K+ KI+ K V Sbjct: 265 VDNKLRKIVELKKEV 279 >SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit Cct4|Schizosaccharomyces pombe|chr 2|||Manual Length = 527 Score = 50.8 bits (116), Expect = 1e-07 Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 7/152 (4%) Frame = +1 Query: 52 EASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVL-----RLKGSGNLKAIQIIKISG 216 E S R L A T+L+SKI+S + +AVDAVL R+ + +LK I+I+K G Sbjct: 143 ELSDRESLLRAATTSLNSKIVSQYSNLLAPIAVDAVLKVIDPRVATNVDLKDIRIVKKLG 202 Query: 217 GLLEESFLDEGFLLNKKV--GVHQPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKI 390 G+++++ L G L + P ++E ANI + + K + + V+ ++ Sbjct: 203 GIIDDTELIPGLALTQTAVKSAGGPTRIEKANIALIQFQLSPPKPDMENQVV-VNDYRQM 261 Query: 391 AELEVAEKEKMKDKVNKILAHKCNVFINRQLI 486 ++ E++ + + KI NV + ++ I Sbjct: 262 DKILKEERQYLLNMCKKIKKAGANVILIQKSI 293 >SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 851 Score = 29.9 bits (64), Expect = 0.24 Identities = 19/67 (28%), Positives = 31/67 (46%) Frame = +1 Query: 274 VHQPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEKMKDKVNKILAH 453 +H+ K E T K+KV+G + ++I+ L + KEK KD ++ H Sbjct: 616 IHKEAKSEIEKDSSKPTEDQESKLKVYGRV----AYSRISNLHKSSKEKGKDSQVRVALH 671 Query: 454 KCNVFIN 474 K N +N Sbjct: 672 KENTALN 678 >SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces pombe|chr 1|||Manual Length = 852 Score = 29.5 bits (63), Expect = 0.32 Identities = 18/49 (36%), Positives = 26/49 (53%) Frame = +1 Query: 61 LRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGNLKAIQIIK 207 L V E++ LS LS +K T ++ +LR GS LKAI ++K Sbjct: 518 LPVKYEHVVFCNLSEFQLSLYKHFITSPEINKILRGTGSQPLKAIGLLK 566 >SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces pombe|chr 3|||Manual Length = 964 Score = 27.1 bits (57), Expect = 1.7 Identities = 13/37 (35%), Positives = 18/37 (48%) Frame = +1 Query: 253 LLNKKVGVHQPKKVENANILIANTPMDTDKIKVFGST 363 L N P K E N++ AN + DK + FGS+ Sbjct: 108 LYNHMSSAPSPNKKEETNVVHANEDISLDKRQSFGSS 144 >SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1689 Score = 25.8 bits (54), Expect = 3.9 Identities = 11/31 (35%), Positives = 17/31 (54%) Frame = -2 Query: 307 C*HFLLSLVDVHQLFCLARTLHPRMILQEDL 215 C HF LS V VH FC + L ++ + ++ Sbjct: 106 CHHFKLSKVKVHLFFCRLKLLDYGLLNESEM 136 >SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccharomyces pombe|chr 3|||Manual Length = 276 Score = 25.8 bits (54), Expect = 3.9 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Frame = +1 Query: 340 KIKVFGSTIKVDSMAKIAELEVAEKEKMKDKVNKIL-AHK 456 K+K G T++ D A VA K+ K K K+L AHK Sbjct: 237 KLKELGITLESDVSHPKAASPVASKKSSKKKNKKVLAAHK 276 >SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schizosaccharomyces pombe|chr 3|||Manual Length = 1053 Score = 25.8 bits (54), Expect = 3.9 Identities = 9/31 (29%), Positives = 17/31 (54%) Frame = +3 Query: 84 RTDHTELKDPFKSQRAFHKISS*CSFAFERI 176 + D +L +P+++ FH S C F F+ + Sbjct: 105 KVDVAQLVEPYRNDCIFHDASGACHFFFKEV 135 >SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizosaccharomyces pombe|chr 3|||Manual Length = 849 Score = 25.4 bits (53), Expect = 5.2 Identities = 10/27 (37%), Positives = 19/27 (70%), Gaps = 2/27 (7%) Frame = +2 Query: 170 KDLVI*KLFKLS--KYLEVFLKNHSWM 244 +DLV+ +F L+ ++L F+K+H W+ Sbjct: 756 RDLVVYPVFDLNLKQFLSPFIKDHEWL 782 >SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosaccharomyces pombe|chr 1|||Manual Length = 2363 Score = 25.4 bits (53), Expect = 5.2 Identities = 15/38 (39%), Positives = 20/38 (52%) Frame = +1 Query: 94 TLSSKILSNHKEHFTKLAVDAVLRLKGSGNLKAIQIIK 207 T +KILS+H E TK V + GS +L A + K Sbjct: 2222 TTHAKILSSHPEWDTKAVTLTVSYIPGSISLAAYTVSK 2259 >SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyces pombe|chr 3|||Manual Length = 363 Score = 25.0 bits (52), Expect = 6.8 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 4/53 (7%) Frame = +1 Query: 277 HQPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAEL----EVAEKEKM 423 H PKKV+ +L T T+ K + + ++ K +L EV EK K+ Sbjct: 51 HDPKKVQQCTLLSIKTGGCTEDCKYCAQSSRYNTGVKATKLMKIDEVLEKAKI 103 >SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pombe|chr 2|||Manual Length = 569 Score = 25.0 bits (52), Expect = 6.8 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Frame = +1 Query: 316 ANTPMDTDKIKVFGSTIKVDSMAKIAEL-EVAEKEKMKDKVNKILAHK 456 A+ DT +I DS A + E +V E+++ KD+ NK HK Sbjct: 390 ASDVSDTAEISEKTEAKNADSEANLEEKSDVGEEKESKDENNKASLHK 437 >SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 678 Score = 24.6 bits (51), Expect = 9.0 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%) Frame = +1 Query: 301 ANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEK-MKDKVNKILAHKCNVFIN 474 AN L +T T K + I D + IAEL +KE+ +K+K L K N Sbjct: 106 ANFLDFSTDFSTLSTKKDETEIAPDCLHYIAELLFQKKEREVKEKWKNELTEKLKTLFN 164 >SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1096 Score = 24.6 bits (51), Expect = 9.0 Identities = 11/36 (30%), Positives = 22/36 (61%) Frame = +1 Query: 373 DSMAKIAELEVAEKEKMKDKVNKILAHKCNVFINRQ 480 DS A A V++K+ +KD N +L +C++ ++ + Sbjct: 857 DSEACAAASFVSKKKSIKDVFNVLLEGRCSLILSHR 892 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.315 0.131 0.350 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,022,768 Number of Sequences: 5004 Number of extensions: 40432 Number of successful extensions: 117 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 111 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 115 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 212331630 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.6 bits)
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