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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313E03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...   231   4e-62
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni...    67   2e-12
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ...    64   1e-11
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    62   6e-11
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C...    51   1e-07
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ...    51   1e-07
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    30   0.24 
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc...    29   0.32 
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    27   1.7  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    26   3.9  
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha...    26   3.9  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    26   3.9  
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    25   5.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   5.2  
SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyce...    25   6.8  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    25   6.8  
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    25   9.0  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   9.0  

>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score =  231 bits (566), Expect = 4e-62
 Identities = 118/173 (68%), Positives = 138/173 (79%)
 Frame = +1

Query: 1   AKQALAEASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSG 180
           A  AL  +S D+  +   A  R DLENIARTTLSSKILS +K HF +LAVDAVLRLKGS 
Sbjct: 133 AIDALRASSIDNSSD--PAKFRSDLENIARTTLSSKILSQNKNHFAQLAVDAVLRLKGST 190

Query: 181 NLKAIQIIKISGGLLEESFLDEGFLLNKKVGVHQPKKVENANILIANTPMDTDKIKVFGS 360
           NL  IQIIKI GG L++SFLDEGF+LNK +GV+ PK +ENANILIANT MDTDK+KVFG+
Sbjct: 191 NLDNIQIIKILGGKLDDSFLDEGFILNKTIGVNCPKVMENANILIANTAMDTDKVKVFGA 250

Query: 361 TIKVDSMAKIAELEVAEKEKMKDKVNKILAHKCNVFINRQLIYNYPEQLFADA 519
            ++VD+  K+AELE AE+EKMK KV KI +H  N FINRQLIYN+PEQLFADA
Sbjct: 251 RVRVDTTGKLAELERAEREKMKAKVEKIKSHNINCFINRQLIYNWPEQLFADA 303


>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
           Cct1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 66.9 bits (156), Expect = 2e-12
 Identities = 46/142 (32%), Positives = 77/142 (54%), Gaps = 9/142 (6%)
 Frame = +1

Query: 73  LENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGN-------LKAIQIIKISGGLLEE 231
           L N+A+T++SSKI+ N  + F+ +AVDA+L +K S +       +KA+ I+K  G    E
Sbjct: 153 LINVAKTSMSSKIIGNDSDFFSTMAVDAMLSVKTSNSKGETRYPVKAVNILKAHGKSSRE 212

Query: 232 SFLDEGFLLNKKVGVHQPK-KVENANILIANTPMDTDKIKV-FGSTIKVDSMAKIAELEV 405
           S L +G+ LN  +     K +V+NA I + +  MD  K K+  G  + +D   ++ ++  
Sbjct: 213 SVLVKGYALNCTIASQAMKTRVQNAKIAVLD--MDLQKTKMALGVHVTIDDPDQLEKIRE 270

Query: 406 AEKEKMKDKVNKILAHKCNVFI 471
            E     ++V KIL    NV +
Sbjct: 271 REVMITLERVKKILNAGANVIL 292


>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
           Cct7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 558

 Score = 64.1 bits (149), Expect = 1e-11
 Identities = 48/161 (29%), Positives = 78/161 (48%), Gaps = 5/161 (3%)
 Frame = +1

Query: 49  NEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSG-NLKAIQIIKISGGLL 225
           +E  LR  L   A T ++SK++ ++   FTK+ VDAVL L     N   I I K+ GG +
Sbjct: 151 DEGKLRDLLTKCASTAMNSKLIRSNSTFFTKMVVDAVLTLDQEDLNENMIGIKKVPGGAM 210

Query: 226 EESFLDEGFLLNKKVGV----HQPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIA 393
           E+S L +G    K         QPK  +N  IL  +  ++  K +   + ++VD + +  
Sbjct: 211 EDSLLVKGVAFKKTFSYAGFEQQPKFFKNPKILCLDVELEL-KAEKDNAEVRVDKVQEYQ 269

Query: 394 ELEVAEKEKMKDKVNKILAHKCNVFINRQLIYNYPEQLFAD 516
            +  AE   +  K+  I+A    V +++  I +   Q FAD
Sbjct: 270 NIVDAEWRIIFSKLEAIVATGAKVVLSKLPIGDLATQYFAD 310


>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 61.7 bits (143), Expect = 6e-11
 Identities = 39/134 (29%), Positives = 72/134 (53%), Gaps = 5/134 (3%)
 Frame = +1

Query: 85  ARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGNLKA-IQIIKIS---GGLLEESFLDEGF 252
           A+T+L SK++S   +HF  +AVDAVL +          ++IK+    GG ++++ L +G 
Sbjct: 171 AKTSLGSKVVSKAHDHFANIAVDAVLSVADLQRKDVDFELIKVDGKVGGSVDDTKLVKGV 230

Query: 253 LLNKKVGVHQ-PKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEKMKD 429
           +++K +   Q P ++ENA I I   P +  K K     + + S+++   L+  EKEK ++
Sbjct: 231 VVDKDMSHPQMPHRIENAKIAILTCPFEPPKPKT-KHKLDITSVSEFEALQAYEKEKFQE 289

Query: 430 KVNKILAHKCNVFI 471
            +  +     N+ I
Sbjct: 290 MIKHVKDAGANLVI 303


>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
           Cct6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 50.8 bits (116), Expect = 1e-07
 Identities = 39/135 (28%), Positives = 70/135 (51%), Gaps = 4/135 (2%)
 Frame = +1

Query: 73  LENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSG---NLKAIQIIKISGGLLEESFLD 243
           L N+A+T+LS+KI S   E      VDA+L ++      +L  ++I+K+      ++ L 
Sbjct: 146 LLNVAKTSLSTKISSKVVESLAPAVVDAILTIRRPDEPIDLHMVEIMKMQNRSASDTQLI 205

Query: 244 EGFLLNKKV-GVHQPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEK 420
            G LL+        PK+V+NA ILI N  ++ +K ++  S     +  +   L  +E++ 
Sbjct: 206 RGLLLDHGARHPDMPKQVKNAYILILNVSLEYEKSEI-NSGFFYSTSEQRERLVESERKF 264

Query: 421 MKDKVNKILAHKCNV 465
           + +K+ KI+  K  V
Sbjct: 265 VDNKLRKIVELKKEV 279


>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
           Cct4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 527

 Score = 50.8 bits (116), Expect = 1e-07
 Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 7/152 (4%)
 Frame = +1

Query: 52  EASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVL-----RLKGSGNLKAIQIIKISG 216
           E S R  L   A T+L+SKI+S +      +AVDAVL     R+  + +LK I+I+K  G
Sbjct: 143 ELSDRESLLRAATTSLNSKIVSQYSNLLAPIAVDAVLKVIDPRVATNVDLKDIRIVKKLG 202

Query: 217 GLLEESFLDEGFLLNKKV--GVHQPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKI 390
           G+++++ L  G  L +        P ++E ANI +    +   K  +    + V+   ++
Sbjct: 203 GIIDDTELIPGLALTQTAVKSAGGPTRIEKANIALIQFQLSPPKPDMENQVV-VNDYRQM 261

Query: 391 AELEVAEKEKMKDKVNKILAHKCNVFINRQLI 486
            ++   E++ + +   KI     NV + ++ I
Sbjct: 262 DKILKEERQYLLNMCKKIKKAGANVILIQKSI 293


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = +1

Query: 274 VHQPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEKMKDKVNKILAH 453
           +H+  K E        T     K+KV+G      + ++I+ L  + KEK KD   ++  H
Sbjct: 616 IHKEAKSEIEKDSSKPTEDQESKLKVYGRV----AYSRISNLHKSSKEKGKDSQVRVALH 671

Query: 454 KCNVFIN 474
           K N  +N
Sbjct: 672 KENTALN 678


>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 852

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +1

Query: 61  LRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGNLKAIQIIK 207
           L V  E++    LS   LS +K   T   ++ +LR  GS  LKAI ++K
Sbjct: 518 LPVKYEHVVFCNLSEFQLSLYKHFITSPEINKILRGTGSQPLKAIGLLK 566


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 253 LLNKKVGVHQPKKVENANILIANTPMDTDKIKVFGST 363
           L N       P K E  N++ AN  +  DK + FGS+
Sbjct: 108 LYNHMSSAPSPNKKEETNVVHANEDISLDKRQSFGSS 144


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 307 C*HFLLSLVDVHQLFCLARTLHPRMILQEDL 215
           C HF LS V VH  FC  + L   ++ + ++
Sbjct: 106 CHHFKLSKVKVHLFFCRLKLLDYGLLNESEM 136


>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 276

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 340 KIKVFGSTIKVDSMAKIAELEVAEKEKMKDKVNKIL-AHK 456
           K+K  G T++ D     A   VA K+  K K  K+L AHK
Sbjct: 237 KLKELGITLESDVSHPKAASPVASKKSSKKKNKKVLAAHK 276


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 84  RTDHTELKDPFKSQRAFHKISS*CSFAFERI 176
           + D  +L +P+++   FH  S  C F F+ +
Sbjct: 105 KVDVAQLVEPYRNDCIFHDASGACHFFFKEV 135


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/27 (37%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = +2

Query: 170 KDLVI*KLFKLS--KYLEVFLKNHSWM 244
           +DLV+  +F L+  ++L  F+K+H W+
Sbjct: 756 RDLVVYPVFDLNLKQFLSPFIKDHEWL 782


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 94   TLSSKILSNHKEHFTKLAVDAVLRLKGSGNLKAIQIIK 207
            T  +KILS+H E  TK     V  + GS +L A  + K
Sbjct: 2222 TTHAKILSSHPEWDTKAVTLTVSYIPGSISLAAYTVSK 2259


>SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 363

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = +1

Query: 277 HQPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAEL----EVAEKEKM 423
           H PKKV+   +L   T   T+  K    + + ++  K  +L    EV EK K+
Sbjct: 51  HDPKKVQQCTLLSIKTGGCTEDCKYCAQSSRYNTGVKATKLMKIDEVLEKAKI 103


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 316 ANTPMDTDKIKVFGSTIKVDSMAKIAEL-EVAEKEKMKDKVNKILAHK 456
           A+   DT +I         DS A + E  +V E+++ KD+ NK   HK
Sbjct: 390 ASDVSDTAEISEKTEAKNADSEANLEEKSDVGEEKESKDENNKASLHK 437


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +1

Query: 301 ANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEK-MKDKVNKILAHKCNVFIN 474
           AN L  +T   T   K   + I  D +  IAEL   +KE+ +K+K    L  K     N
Sbjct: 106 ANFLDFSTDFSTLSTKKDETEIAPDCLHYIAELLFQKKEREVKEKWKNELTEKLKTLFN 164


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +1

Query: 373 DSMAKIAELEVAEKEKMKDKVNKILAHKCNVFINRQ 480
           DS A  A   V++K+ +KD  N +L  +C++ ++ +
Sbjct: 857 DSEACAAASFVSKKKSIKDVFNVLLEGRCSLILSHR 892


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.131    0.350 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,022,768
Number of Sequences: 5004
Number of extensions: 40432
Number of successful extensions: 117
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)

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