Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313E03f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 231 4e-62
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 67 2e-12
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 64 1e-11
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 62 6e-11
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 51 1e-07
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 51 1e-07
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 30 0.24
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 29 0.32
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 27 1.7
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 26 3.9
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 26 3.9
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi... 26 3.9
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 25 5.2
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 5.2
SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyce... 25 6.8
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 25 6.8
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch... 25 9.0
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 9.0
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 231 bits (566), Expect = 4e-62
Identities = 118/173 (68%), Positives = 138/173 (79%)
Frame = +1
Query: 1 AKQALAEASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSG 180
A AL +S D+ + A R DLENIARTTLSSKILS +K HF +LAVDAVLRLKGS
Sbjct: 133 AIDALRASSIDNSSD--PAKFRSDLENIARTTLSSKILSQNKNHFAQLAVDAVLRLKGST 190
Query: 181 NLKAIQIIKISGGLLEESFLDEGFLLNKKVGVHQPKKVENANILIANTPMDTDKIKVFGS 360
NL IQIIKI GG L++SFLDEGF+LNK +GV+ PK +ENANILIANT MDTDK+KVFG+
Sbjct: 191 NLDNIQIIKILGGKLDDSFLDEGFILNKTIGVNCPKVMENANILIANTAMDTDKVKVFGA 250
Query: 361 TIKVDSMAKIAELEVAEKEKMKDKVNKILAHKCNVFINRQLIYNYPEQLFADA 519
++VD+ K+AELE AE+EKMK KV KI +H N FINRQLIYN+PEQLFADA
Sbjct: 251 RVRVDTTGKLAELERAEREKMKAKVEKIKSHNINCFINRQLIYNWPEQLFADA 303
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 66.9 bits (156), Expect = 2e-12
Identities = 46/142 (32%), Positives = 77/142 (54%), Gaps = 9/142 (6%)
Frame = +1
Query: 73 LENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGN-------LKAIQIIKISGGLLEE 231
L N+A+T++SSKI+ N + F+ +AVDA+L +K S + +KA+ I+K G E
Sbjct: 153 LINVAKTSMSSKIIGNDSDFFSTMAVDAMLSVKTSNSKGETRYPVKAVNILKAHGKSSRE 212
Query: 232 SFLDEGFLLNKKVGVHQPK-KVENANILIANTPMDTDKIKV-FGSTIKVDSMAKIAELEV 405
S L +G+ LN + K +V+NA I + + MD K K+ G + +D ++ ++
Sbjct: 213 SVLVKGYALNCTIASQAMKTRVQNAKIAVLD--MDLQKTKMALGVHVTIDDPDQLEKIRE 270
Query: 406 AEKEKMKDKVNKILAHKCNVFI 471
E ++V KIL NV +
Sbjct: 271 REVMITLERVKKILNAGANVIL 292
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 64.1 bits (149), Expect = 1e-11
Identities = 48/161 (29%), Positives = 78/161 (48%), Gaps = 5/161 (3%)
Frame = +1
Query: 49 NEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSG-NLKAIQIIKISGGLL 225
+E LR L A T ++SK++ ++ FTK+ VDAVL L N I I K+ GG +
Sbjct: 151 DEGKLRDLLTKCASTAMNSKLIRSNSTFFTKMVVDAVLTLDQEDLNENMIGIKKVPGGAM 210
Query: 226 EESFLDEGFLLNKKVGV----HQPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIA 393
E+S L +G K QPK +N IL + ++ K + + ++VD + +
Sbjct: 211 EDSLLVKGVAFKKTFSYAGFEQQPKFFKNPKILCLDVELEL-KAEKDNAEVRVDKVQEYQ 269
Query: 394 ELEVAEKEKMKDKVNKILAHKCNVFINRQLIYNYPEQLFAD 516
+ AE + K+ I+A V +++ I + Q FAD
Sbjct: 270 NIVDAEWRIIFSKLEAIVATGAKVVLSKLPIGDLATQYFAD 310
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 61.7 bits (143), Expect = 6e-11
Identities = 39/134 (29%), Positives = 72/134 (53%), Gaps = 5/134 (3%)
Frame = +1
Query: 85 ARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGNLKA-IQIIKIS---GGLLEESFLDEGF 252
A+T+L SK++S +HF +AVDAVL + ++IK+ GG ++++ L +G
Sbjct: 171 AKTSLGSKVVSKAHDHFANIAVDAVLSVADLQRKDVDFELIKVDGKVGGSVDDTKLVKGV 230
Query: 253 LLNKKVGVHQ-PKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEKMKD 429
+++K + Q P ++ENA I I P + K K + + S+++ L+ EKEK ++
Sbjct: 231 VVDKDMSHPQMPHRIENAKIAILTCPFEPPKPKT-KHKLDITSVSEFEALQAYEKEKFQE 289
Query: 430 KVNKILAHKCNVFI 471
+ + N+ I
Sbjct: 290 MIKHVKDAGANLVI 303
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 50.8 bits (116), Expect = 1e-07
Identities = 39/135 (28%), Positives = 70/135 (51%), Gaps = 4/135 (2%)
Frame = +1
Query: 73 LENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSG---NLKAIQIIKISGGLLEESFLD 243
L N+A+T+LS+KI S E VDA+L ++ +L ++I+K+ ++ L
Sbjct: 146 LLNVAKTSLSTKISSKVVESLAPAVVDAILTIRRPDEPIDLHMVEIMKMQNRSASDTQLI 205
Query: 244 EGFLLNKKV-GVHQPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEK 420
G LL+ PK+V+NA ILI N ++ +K ++ S + + L +E++
Sbjct: 206 RGLLLDHGARHPDMPKQVKNAYILILNVSLEYEKSEI-NSGFFYSTSEQRERLVESERKF 264
Query: 421 MKDKVNKILAHKCNV 465
+ +K+ KI+ K V
Sbjct: 265 VDNKLRKIVELKKEV 279
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 50.8 bits (116), Expect = 1e-07
Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 7/152 (4%)
Frame = +1
Query: 52 EASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVL-----RLKGSGNLKAIQIIKISG 216
E S R L A T+L+SKI+S + +AVDAVL R+ + +LK I+I+K G
Sbjct: 143 ELSDRESLLRAATTSLNSKIVSQYSNLLAPIAVDAVLKVIDPRVATNVDLKDIRIVKKLG 202
Query: 217 GLLEESFLDEGFLLNKKV--GVHQPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKI 390
G+++++ L G L + P ++E ANI + + K + + V+ ++
Sbjct: 203 GIIDDTELIPGLALTQTAVKSAGGPTRIEKANIALIQFQLSPPKPDMENQVV-VNDYRQM 261
Query: 391 AELEVAEKEKMKDKVNKILAHKCNVFINRQLI 486
++ E++ + + KI NV + ++ I
Sbjct: 262 DKILKEERQYLLNMCKKIKKAGANVILIQKSI 293
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 29.9 bits (64), Expect = 0.24
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = +1
Query: 274 VHQPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEKMKDKVNKILAH 453
+H+ K E T K+KV+G + ++I+ L + KEK KD ++ H
Sbjct: 616 IHKEAKSEIEKDSSKPTEDQESKLKVYGRV----AYSRISNLHKSSKEKGKDSQVRVALH 671
Query: 454 KCNVFIN 474
K N +N
Sbjct: 672 KENTALN 678
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 29.5 bits (63), Expect = 0.32
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +1
Query: 61 LRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGNLKAIQIIK 207
L V E++ LS LS +K T ++ +LR GS LKAI ++K
Sbjct: 518 LPVKYEHVVFCNLSEFQLSLYKHFITSPEINKILRGTGSQPLKAIGLLK 566
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 253 LLNKKVGVHQPKKVENANILIANTPMDTDKIKVFGST 363
L N P K E N++ AN + DK + FGS+
Sbjct: 108 LYNHMSSAPSPNKKEETNVVHANEDISLDKRQSFGSS 144
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 307 C*HFLLSLVDVHQLFCLARTLHPRMILQEDL 215
C HF LS V VH FC + L ++ + ++
Sbjct: 106 CHHFKLSKVKVHLFFCRLKLLDYGLLNESEM 136
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 25.8 bits (54), Expect = 3.9
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 340 KIKVFGSTIKVDSMAKIAELEVAEKEKMKDKVNKIL-AHK 456
K+K G T++ D A VA K+ K K K+L AHK
Sbjct: 237 KLKELGITLESDVSHPKAASPVASKKSSKKKNKKVLAAHK 276
>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
reductase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1053
Score = 25.8 bits (54), Expect = 3.9
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +3
Query: 84 RTDHTELKDPFKSQRAFHKISS*CSFAFERI 176
+ D +L +P+++ FH S C F F+ +
Sbjct: 105 KVDVAQLVEPYRNDCIFHDASGACHFFFKEV 135
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/27 (37%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Frame = +2
Query: 170 KDLVI*KLFKLS--KYLEVFLKNHSWM 244
+DLV+ +F L+ ++L F+K+H W+
Sbjct: 756 RDLVVYPVFDLNLKQFLSPFIKDHEWL 782
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 94 TLSSKILSNHKEHFTKLAVDAVLRLKGSGNLKAIQIIK 207
T +KILS+H E TK V + GS +L A + K
Sbjct: 2222 TTHAKILSSHPEWDTKAVTLTVSYIPGSISLAAYTVSK 2259
>SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 363
Score = 25.0 bits (52), Expect = 6.8
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = +1
Query: 277 HQPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAEL----EVAEKEKM 423
H PKKV+ +L T T+ K + + ++ K +L EV EK K+
Sbjct: 51 HDPKKVQQCTLLSIKTGGCTEDCKYCAQSSRYNTGVKATKLMKIDEVLEKAKI 103
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 25.0 bits (52), Expect = 6.8
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 316 ANTPMDTDKIKVFGSTIKVDSMAKIAEL-EVAEKEKMKDKVNKILAHK 456
A+ DT +I DS A + E +V E+++ KD+ NK HK
Sbjct: 390 ASDVSDTAEISEKTEAKNADSEANLEEKSDVGEEKESKDENNKASLHK 437
>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 24.6 bits (51), Expect = 9.0
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +1
Query: 301 ANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEK-MKDKVNKILAHKCNVFIN 474
AN L +T T K + I D + IAEL +KE+ +K+K L K N
Sbjct: 106 ANFLDFSTDFSTLSTKKDETEIAPDCLHYIAELLFQKKEREVKEKWKNELTEKLKTLFN 164
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +1
Query: 373 DSMAKIAELEVAEKEKMKDKVNKILAHKCNVFINRQ 480
DS A A V++K+ +KD N +L +C++ ++ +
Sbjct: 857 DSEACAAASFVSKKKSIKDVFNVLLEGRCSLILSHR 892
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.131 0.350
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,022,768
Number of Sequences: 5004
Number of extensions: 40432
Number of successful extensions: 117
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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