Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313E03f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0339 + 23287620-23287676,23287784-23287849,23287937-232880... 238 2e-63
05_07_0067 + 27463703-27463705,27464309-27464365,27464779-274648... 226 1e-59
06_03_1193 - 28298656-28298754,28299303-28299377,28299456-282995... 71 7e-13
02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949 58 3e-09
04_04_0729 + 27612106-27612195,27612284-27612370,27612469-276125... 58 6e-09
06_03_0477 - 21250811-21250981,21251261-21251374,21251447-212516... 54 5e-08
10_08_0620 - 19321612-19323237 51 5e-07
09_02_0318 - 7191763-7191879,7192375-7192494,7192568-7192666,719... 32 0.32
02_05_0131 + 26098459-26098668,26098788-26098863,26101972-261021... 28 4.0
02_01_0024 + 159595-159801,159892-160017,160201-160338,160431-16... 28 4.0
11_04_0305 - 16162063-16162096,16162282-16164365,16165283-161653... 28 5.2
05_01_0125 - 853691-853984,854027-854659 28 5.2
01_01_0009 + 57658-60086,60855-60935,61094-61295,61385-61905,619... 27 6.9
05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650 27 9.1
>03_05_0339 +
23287620-23287676,23287784-23287849,23287937-23288048,
23288240-23288368,23288795-23288866,23289245-23289360,
23289494-23289570,23289788-23290273,23290373-23290688,
23290769-23290915
Length = 525
Score = 238 bits (582), Expect = 2e-63
Identities = 111/173 (64%), Positives = 147/173 (84%)
Frame = +1
Query: 1 AKQALAEASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSG 180
A+ AL E + D+++N+++ R DL NIA TTLSSKILS KE+F +LAVDAVLRLKGS
Sbjct: 130 ARNALLERTMDNKENIDK--FRSDLMNIAMTTLSSKILSQDKEYFAELAVDAVLRLKGST 187
Query: 181 NLKAIQIIKISGGLLEESFLDEGFLLNKKVGVHQPKKVENANILIANTPMDTDKIKVFGS 360
NL+AIQI+KI GG L++SFLDEGF+L+KK+G+ QPK++ENA IL+ANT MDTDK+K++G+
Sbjct: 188 NLEAIQILKIPGGSLKDSFLDEGFILDKKIGLGQPKRIENAKILVANTAMDTDKVKIYGA 247
Query: 361 TIKVDSMAKIAELEVAEKEKMKDKVNKILAHKCNVFINRQLIYNYPEQLFADA 519
++VDSMAK+AE+E AEK+KM++KV KI+ H N F+NRQLIYN+PE+LFADA
Sbjct: 248 RVRVDSMAKVAEIEAAEKQKMREKVQKIIGHGINCFVNRQLIYNFPEELFADA 300
>05_07_0067 +
27463703-27463705,27464309-27464365,27464779-27464844,
27464985-27465096,27465281-27465409,27466076-27466191,
27466364-27466440,27466678-27467163,27467255-27467570,
27467618-27467797
Length = 513
Score = 226 bits (552), Expect = 1e-59
Identities = 105/162 (64%), Positives = 134/162 (82%)
Frame = +1
Query: 34 HQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGNLKAIQIIKIS 213
H + R DL NIA TTLSSKILS KE+F LAVDAVLRLKGS NL+AIQI+K +
Sbjct: 116 HPMTIIADKFRSDLMNIAMTTLSSKILSQDKEYFAGLAVDAVLRLKGSTNLEAIQILKKT 175
Query: 214 GGLLEESFLDEGFLLNKKVGVHQPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIA 393
GG L++SFLDEGF+L+KK+G+ QPK++ENA IL+ANT MDTDK+K++G+ ++VDSMAK+A
Sbjct: 176 GGSLKDSFLDEGFILDKKIGLGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMAKVA 235
Query: 394 ELEVAEKEKMKDKVNKILAHKCNVFINRQLIYNYPEQLFADA 519
E+E AEK+KM++KV KI+ H N F+NRQLIYN+PE+LFADA
Sbjct: 236 EIEAAEKQKMREKVQKIIGHGINCFVNRQLIYNFPEELFADA 277
>06_03_1193 -
28298656-28298754,28299303-28299377,28299456-28299544,
28299679-28299760,28300385-28300474,28300557-28300655,
28300733-28300852,28300968-28301084,28301174-28301309,
28301415-28301584,28301744-28301947,28302032-28302157,
28302841-28303101,28303215-28303229
Length = 560
Score = 70.5 bits (165), Expect = 7e-13
Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 4/152 (2%)
Frame = +1
Query: 73 LENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGNLKAIQIIKISGGLLEESFLDEGF 252
L A TTLSSK++ KE F + VDAVL + L + I K+ GG + +SFL G
Sbjct: 158 LAKCAATTLSSKLIGGEKEFFASMVVDAVLAISNDDRLNLLGIKKVPGGTMRDSFLVNGV 217
Query: 253 LLNKKVGV----HQPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEK 420
K QPKK + IL+ N ++ K + + I++ + + AE
Sbjct: 218 AFKKTFSYAGFEQQPKKFLSPKILLLNIELEL-KSEKENAEIRLSDPLQYQSIVDAEWNI 276
Query: 421 MKDKVNKILAHKCNVFINRQLIYNYPEQLFAD 516
+ DK++K + + ++R I + Q FAD
Sbjct: 277 IYDKLDKCVKSGAKIVLSRLAIGDLATQYFAD 308
>02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949
Length = 550
Score = 58.4 bits (135), Expect = 3e-09
Identities = 45/152 (29%), Positives = 74/152 (48%), Gaps = 7/152 (4%)
Frame = +1
Query: 52 EASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSG-----NLKAIQIIKISG 216
E S R L A T L+SK++S + + LAVDA L + +L+ I+++K G
Sbjct: 150 ELSDRDSLVKSASTALNSKVVSQYSSLLSPLAVDAALSVVDPAHPDLLDLRDIRVVKKLG 209
Query: 217 GLLEESFLDEGFLLNKKV--GVHQPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKI 390
G ++++ L G + +KK P +VENA I + + K + S I V A++
Sbjct: 210 GTVDDTELIRGLIFDKKASHAAGGPTRVENAKIAVIQFQVSPPKTDIEQSVI-VSDYAQM 268
Query: 391 AELEVAEKEKMKDKVNKILAHKCNVFINRQLI 486
+ E+ + V KI A CNV + ++ I
Sbjct: 269 DRILREERNYILGMVKKIKASGCNVLLIQKSI 300
>04_04_0729 +
27612106-27612195,27612284-27612370,27612469-27612528,
27612554-27612688,27612769-27612864,27613149-27613214,
27613647-27613864,27614093-27614189,27614605-27614691,
27614892-27615026,27615121-27615225,27615717-27615845,
27615925-27616028,27616598-27616688,27616774-27616857
Length = 527
Score = 57.6 bits (133), Expect = 6e-09
Identities = 41/157 (26%), Positives = 79/157 (50%), Gaps = 8/157 (5%)
Frame = +1
Query: 73 LENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSG-------NLKAIQIIKISGGLLEE 231
L N A+T++SSK++++ + F L VDAV +K + +K+I I+K G ++
Sbjct: 133 LINCAKTSMSSKLINSDSDFFANLVVDAVQAVKTTNAKGEVKYPIKSINILKAHGKSAKD 192
Query: 232 SFLDEGFLLNK-KVGVHQPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVA 408
S+L G+ LN + P +V A I + + K+++ G + V ++ ++
Sbjct: 193 SYLLNGYALNTGRAAQGMPTRVTPARIACLDFNLQKTKMQL-GVQVLVTDPRELEKIRQR 251
Query: 409 EKEKMKDKVNKILAHKCNVFINRQLIYNYPEQLFADA 519
E + K+++ KIL NV + + I + + F +A
Sbjct: 252 ESDITKERIEKILKAGANVVLTTKGIDDMSLKYFVEA 288
>06_03_0477 -
21250811-21250981,21251261-21251374,21251447-21251613,
21252051-21252153,21252315-21252367,21252438-21252570,
21252835-21253183,21253685-21254003,21254519-21254717
Length = 535
Score = 54.4 bits (125), Expect = 5e-08
Identities = 43/149 (28%), Positives = 77/149 (51%), Gaps = 10/149 (6%)
Frame = +1
Query: 25 SFDHQKNLNE----ASLRVD-LENIARTTLSSKILSNHKEHFTKLAVDAVLRL----KGS 177
+FDH ++++ ++ ++ L TTLSSKI++ K ++AV AVL + +
Sbjct: 140 AFDHLEHISHKFEFSATNIEPLVQTCMTTLSSKIVNRCKRTLAEIAVKAVLAVADLERKD 199
Query: 178 GNLKAIQIIKISGGLLEESFLDEGFLLNKKVGVHQ-PKKVENANILIANTPMDTDKIKVF 354
NL I++ GG LE++ L G +++K + Q PK++E+A I I P + K K
Sbjct: 200 VNLDLIKVEGKVGGKLEDTELVYGIIVDKDMSHPQMPKRIEDAKIAILTCPFEPPKPKT- 258
Query: 355 GSTIKVDSMAKIAELEVAEKEKMKDKVNK 441
+ +D++ K L E++ + V K
Sbjct: 259 KHKVDIDTVEKFQMLREQEQKYFDEMVQK 287
>10_08_0620 - 19321612-19323237
Length = 541
Score = 51.2 bits (117), Expect = 5e-07
Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 7/152 (4%)
Frame = +1
Query: 52 EASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSG-----NLKAIQIIKISG 216
E S R L A T L+SK++S + + LAVDA L + +L+ I+++K G
Sbjct: 154 ELSDRDALVKSASTALNSKVVSQYSTLLSPLAVDAALAVVDPAHPYLLDLRDIRVVKKLG 213
Query: 217 GLLEESFLDEGFLLNKKVG--VHQPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKI 390
++++ L G +LNKK P ++ +A I + + K + S + V A++
Sbjct: 214 CTVDDTELIRGLVLNKKASHVAGGPTRIGDAKIAVIQFQVSPPKTDIEHSVV-VSDYAQM 272
Query: 391 AELEVAEKEKMKDKVNKILAHKCNVFINRQLI 486
+ E+ + V KI A CNV + ++ I
Sbjct: 273 DRILREERNYILGMVKKIKASGCNVLLIQKSI 304
>09_02_0318 -
7191763-7191879,7192375-7192494,7192568-7192666,
7192846-7192957,7193058-7193161,7193341-7193520,
7193611-7193880,7194364-7194660,7195283-7195477
Length = 497
Score = 31.9 bits (69), Expect = 0.32
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +1
Query: 280 QPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEK 420
Q + NA+I +A PMD ++ FG +K+D +I +E AEK K
Sbjct: 203 QAHRETNADITVAALPMDEERATAFG-LMKIDDEGRI--IEFAEKPK 246
>02_05_0131 +
26098459-26098668,26098788-26098863,26101972-26102178,
26102311-26102435,26102740-26102900,26102977-26103067,
26103161-26103310,26103396-26103632
Length = 418
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +1
Query: 271 GVHQPKKVENANILIANTPMDTDKI--KVFGSTIKVDSMAKIAELEVAEKEKMK 426
G PKK+ L+ N P D+D + +VFG + + ++ KI + K K K
Sbjct: 253 GYMDPKKLNIEPTLLLNPPADSDVMTEEVFGPILPIITVKKIEDCIAYLKSKPK 306
>02_01_0024 +
159595-159801,159892-160017,160201-160338,160431-160526,
160958-161200,161249-161537,161612-161781,161975-162052,
162156-162227,162345-162449,162555-162647,162737-162829,
163109-163235,163317-163330
Length = 616
Score = 28.3 bits (60), Expect = 4.0
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 13/150 (8%)
Frame = +1
Query: 40 KNLNEA-SLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGNLKAIQIIKISG 216
K +N A L LE+ R I++ E LA V RL+G+ LK I IK G
Sbjct: 294 KKINNARDLITILEDAIRGGYPILIVTEDIEQ-EALATLVVNRLRGA--LK-IAAIKAPG 349
Query: 217 -GLLEESFLDE------GFLLNKKVGVHQPKKVENANILIANTPMDTDKIKVFGSTIKVD 375
G + +LD+ G ++ ++VG+ K + A + D + G D
Sbjct: 350 FGERKSQYLDDIATLTGGTVIREEVGLSLDKADRDVLGTAAKVVVTKDSTTIVGDGTTQD 409
Query: 376 SMAKIA-----ELEVAEKEKMKDKVNKILA 450
+ K ++EVAE+E K+K+N+ +A
Sbjct: 410 EVNKRVTQIKNQIEVAEQEYEKEKLNERIA 439
>11_04_0305 -
16162063-16162096,16162282-16164365,16165283-16165351,
16168317-16169288,16169548-16169650,16170427-16170509
Length = 1114
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +1
Query: 73 LENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGNLKAIQIIKISGGLLEESF 237
LEN++ ++ ++K KEH L + RL G LK + ++ L+EE F
Sbjct: 773 LENVSASSYAAKASLCTKEHLIFLKLRCTSRLGDDGLLKEEGLSEMEQRLVEEVF 827
>05_01_0125 - 853691-853984,854027-854659
Length = 308
Score = 27.9 bits (59), Expect = 5.2
Identities = 20/65 (30%), Positives = 33/65 (50%)
Frame = -1
Query: 317 AIRMLAFSTFFG*CTPTFLFSKNPSSKNDSSRRPPDILII*IAFKLPDPFKRKTASTANF 138
A+R+ A S + + F ++ ++RR P++L F P+P R+T+ST F
Sbjct: 43 AVRLRAVSRDWNAALTSDYFILAHRARAAAARRHPELLF----FAPPEP--RRTSSTTTF 96
Query: 137 VKCSL 123
CSL
Sbjct: 97 YACSL 101
>01_01_0009 +
57658-60086,60855-60935,61094-61295,61385-61905,
61996-62114,62248-62345
Length = 1149
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -2
Query: 463 HYICVLKSCSLCPSFSLSQLLPIQQSWPLNPL*LWNQTL*SCQ 335
HY CV+ + FS Q + ++ + +P+ +W L SC+
Sbjct: 577 HYACVIDTLGRVGCFSQVQKMLVEMPFKADPI-IWTSILHSCR 618
>05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650
Length = 147
Score = 27.1 bits (57), Expect = 9.1
Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 5/109 (4%)
Frame = +1
Query: 172 GSGNLKAIQIIKISGGLLEESFLDEGFLLNKKVGVHQPKKVENANILIANTPMDTDK--I 345
G+ N K +Q K L L NKK QP V++A ++++ T
Sbjct: 25 GNSNAK-VQFTKEPNNLYNVHSYKHSGLANKKTVTIQPSGVKDAAVVLSTTKTKKQNAPA 83
Query: 346 KVFGSTI---KVDSMAKIAELEVAEKEKMKDKVNKILAHKCNVFINRQL 483
K++ ++ + MAK + +V++ D LA +V+ + Q+
Sbjct: 84 KLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVYRSLQV 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.131 0.350
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,164,781
Number of Sequences: 37544
Number of extensions: 228733
Number of successful extensions: 609
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -