BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS313E03f (521 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 245 2e-65 SB_54147| Best HMM Match : No HMM Matches (HMM E-Value=.) 113 8e-26 SB_57454| Best HMM Match : DUF924 (HMM E-Value=1) 99 2e-21 SB_3351| Best HMM Match : No HMM Matches (HMM E-Value=.) 78 5e-15 SB_30876| Best HMM Match : Ribosomal_S16 (HMM E-Value=7.1) 59 2e-09 SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 50 1e-06 SB_59319| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0 SB_50789| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8 SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1 SB_8887| Best HMM Match : G-patch (HMM E-Value=1.2e-08) 28 4.1 SB_13397| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1 SB_20714| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1 SB_39101| Best HMM Match : RVT_1 (HMM E-Value=2.4e-38) 27 9.4 SB_52463| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4 SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4 >SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) Length = 531 Score = 245 bits (599), Expect = 2e-65 Identities = 122/173 (70%), Positives = 143/173 (82%) Frame = +1 Query: 1 AKQALAEASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSG 180 A++AL A+ DH + + R DL NIARTTLSSKIL H++HF KLAVDAVLRLKGSG Sbjct: 134 AEKALEAAAVDHSSDPEK--FREDLMNIARTTLSSKILVQHRDHFAKLAVDAVLRLKGSG 191 Query: 181 NLKAIQIIKISGGLLEESFLDEGFLLNKKVGVHQPKKVENANILIANTPMDTDKIKVFGS 360 +L AIQIIK GG + +SFLDEGFLL+KK+GV+QPKK+ENA ILIANTPMD DKIKVFGS Sbjct: 192 DLNAIQIIKKLGGGMVDSFLDEGFLLDKKIGVNQPKKIENAKILIANTPMDADKIKVFGS 251 Query: 361 TIKVDSMAKIAELEVAEKEKMKDKVNKILAHKCNVFINRQLIYNYPEQLFADA 519 ++VDS AKIA+LE+AEK+KMK+KV I+ H N FINRQLIYNYPEQLFADA Sbjct: 252 RVRVDSTAKIADLEMAEKQKMKEKVEMIIKHDINCFINRQLIYNYPEQLFADA 304 >SB_54147| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 74 Score = 113 bits (272), Expect = 8e-26 Identities = 51/73 (69%), Positives = 62/73 (84%) Frame = +1 Query: 256 LNKKVGVHQPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEKMKDKV 435 ++KK+GV+QPKK+ENA ILIANTPMD DK+KVFGS ++VDS AKIAELE AEK+KMKDKV Sbjct: 1 MDKKIGVNQPKKIENAKILIANTPMDADKVKVFGSRVRVDSTAKIAELEKAEKQKMKDKV 60 Query: 436 NKILAHKCNVFIN 474 I+ H N F+N Sbjct: 61 EMIIKHGINCFVN 73 >SB_57454| Best HMM Match : DUF924 (HMM E-Value=1) Length = 144 Score = 99.1 bits (236), Expect = 2e-21 Identities = 53/83 (63%), Positives = 63/83 (75%) Frame = +1 Query: 1 AKQALAEASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSG 180 A++AL A+ DH + + R DL NIARTTLSSKIL H++HF KLAVDAVLRLKGSG Sbjct: 52 AEKALEAAAVDHSSDPEK--FRDDLMNIARTTLSSKILVQHRDHFAKLAVDAVLRLKGSG 109 Query: 181 NLKAIQIIKISGGLLEESFLDEG 249 +L AIQIIK GG + +SFLDEG Sbjct: 110 DLNAIQIIKKLGGGMVDSFLDEG 132 >SB_3351| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 175 Score = 77.8 bits (183), Expect = 5e-15 Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 4/165 (2%) Frame = +1 Query: 34 HQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGNLKAIQIIKIS 213 H K + +R LE A T LSSK+++ KE F K+ VDAV+ L L I + K+S Sbjct: 11 HVKKNDAGEMRQLLERCAATALSSKLIATQKEFFAKMVVDAVMMLDELLPLDMIGMKKVS 70 Query: 214 GGLLEESFLDEGFLLNKKVGV----HQPKKVENANILIANTPMDTDKIKVFGSTIKVDSM 381 GG LE+S L EG K QPK + I + N ++ K + + +++D++ Sbjct: 71 GGALEDSMLIEGVAFKKTFSYAGFEMQPKTYNHCKIALLNVELEL-KAEKENAEVRLDNV 129 Query: 382 AKIAELEVAEKEKMKDKVNKILAHKCNVFINRQLIYNYPEQLFAD 516 + AE + + DK++K++ V +++ I + Q FAD Sbjct: 130 KDYQSIVDAEWDILYDKLDKVVKSGAKVVLSKLPIGDVATQYFAD 174 >SB_30876| Best HMM Match : Ribosomal_S16 (HMM E-Value=7.1) Length = 131 Score = 59.3 bits (137), Expect = 2e-09 Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 8/110 (7%) Frame = +1 Query: 85 ARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGN-------LKAIQIIKISGGLLEESFLD 243 A T LSSK++ + F + VDAV+ +K +GN +KAI ++K GG +ES L Sbjct: 17 ANTALSSKLIGQQGDFFANMIVDAVMAVKRTGNKGEAKYPIKAINVLKAHGGSAKESILV 76 Query: 244 EGFLLNKKVGVH-QPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKI 390 +G+ LN + PK+V NA I + + K+ + G ++ VD K+ Sbjct: 77 DGYALNCTIASQAMPKQVTNAKIACLDFTLQKAKMHL-GVSVVVDDPEKL 125 >SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) Length = 505 Score = 50.0 bits (114), Expect = 1e-06 Identities = 38/134 (28%), Positives = 69/134 (51%), Gaps = 5/134 (3%) Frame = +1 Query: 85 ARTTLSSKILSNHKEHFTKLAVDAVLRL----KGSGNLKAIQIIKISGGLLEESFLDEGF 252 A TTL SKI+S ++AVDAVL + + + + I++ GG L+++ L +G Sbjct: 167 AMTTLGSKIVSRCHRPLAEIAVDAVLSVADLERKDVDFELIKVEGKEGGKLDDTVLVKGV 226 Query: 253 LLNKKVGVHQ-PKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEKMKD 429 +++K + Q PK V++A I I P + K K + V ++ +L+ E+EK + Sbjct: 227 VVDKDMSHPQMPKVVKDAKIAILTCPFEPPKPKT-KHKLDVATVEDYKKLQEYEREKFTE 285 Query: 430 KVNKILAHKCNVFI 471 + ++ N+ I Sbjct: 286 MIKQVKDTGANLAI 299 >SB_59319| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 28 Score = 30.3 bits (65), Expect = 1.0 Identities = 15/28 (53%), Positives = 19/28 (67%) Frame = +1 Query: 349 VFGSTIKVDSMAKIAELEVAEKEKMKDK 432 VFGS ++VDS AKIA +E +K K K Sbjct: 1 VFGSRVRVDSTAKIAGVESRKKWKRTPK 28 >SB_50789| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 777 Score = 29.5 bits (63), Expect = 1.8 Identities = 20/63 (31%), Positives = 34/63 (53%) Frame = +1 Query: 28 FDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGNLKAIQIIK 207 F Q LN A L V L+NIAR + +I + +E F + D +L ++ S + + ++ + Sbjct: 68 FFMQAQLNIACLVVMLDNIARN--NRRIRKSGREEFLRKEEDNLLGIRSSESSRIKRVTR 125 Query: 208 ISG 216 SG Sbjct: 126 NSG 128 >SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 762 Score = 28.7 bits (61), Expect = 3.1 Identities = 13/36 (36%), Positives = 24/36 (66%) Frame = +1 Query: 64 RVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLK 171 R L N+A+T+L +K+ + + T++ VDAVL ++ Sbjct: 247 RDTLINVAKTSLRTKVRTELADLLTEVVVDAVLTIR 282 >SB_8887| Best HMM Match : G-patch (HMM E-Value=1.2e-08) Length = 739 Score = 28.3 bits (60), Expect = 4.1 Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 6/124 (4%) Frame = +1 Query: 97 LSSKILSNHKEHFTKLAVDAVLRLKGSGNLKAIQIIKISGGLLEESFL-DE--GFLLNKK 267 L SKI+S+ + HF + + +G+ +LK+ S + + F+ DE G + Sbjct: 190 LQSKIVSSKELHFFEPTQISTSHEQGNQDLKSALAEAASAAMTKSGFVFDERTGLYYDWN 249 Query: 268 VGV-HQPKK--VENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEKMKDKVN 438 G+ + P+ N N T ++ + F S + + ++A A+ V ++++ K+K Sbjct: 250 SGLYYNPRTCLYYNNNTGTYYTYNESSRSYDFHSQVDIQAIANTAQESVEKQKRRKEKKI 309 Query: 439 KILA 450 K LA Sbjct: 310 KGLA 313 >SB_13397| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 513 Score = 27.5 bits (58), Expect = 7.1 Identities = 14/43 (32%), Positives = 21/43 (48%) Frame = +1 Query: 325 PMDTDKIKVFGSTIKVDSMAKIAELEVAEKEKMKDKVNKILAH 453 P+ T I+VF I D + KIA+ E+ E K + + H Sbjct: 399 PILTKLIRVFRRQILEDDLDKIAKTEIHEDSKFMEAIELFTHH 441 >SB_20714| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 494 Score = 27.5 bits (58), Expect = 7.1 Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 1/79 (1%) Frame = +1 Query: 256 LNKKVGVHQPKKVENANILIANTPMDTDKIKVFGSTI-KVDSMAKIAELEVAEKEKMKDK 432 +N +G K ENA + N + + + I ++++ +AE K +D Sbjct: 28 INANLGESVTLKAENAALKAENANLKASMLVDVSAKIGELENQLSELTHRLAEVVKERDG 87 Query: 433 VNKILAHKCNVFINRQLIY 489 + K L + N F NR+ ++ Sbjct: 88 LRKELGKEKNTFFNRESLF 106 >SB_39101| Best HMM Match : RVT_1 (HMM E-Value=2.4e-38) Length = 856 Score = 27.1 bits (57), Expect = 9.4 Identities = 11/41 (26%), Positives = 22/41 (53%) Frame = +1 Query: 334 TDKIKVFGSTIKVDSMAKIAELEVAEKEKMKDKVNKILAHK 456 T+K F +++ ++AE+EV E+ D+ ++ HK Sbjct: 300 TEKTLTFAKALEIAQSMEMAEIEVVGIERALDRPDRAAKHK 340 >SB_52463| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1184 Score = 27.1 bits (57), Expect = 9.4 Identities = 20/53 (37%), Positives = 29/53 (54%) Frame = +1 Query: 58 SLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGNLKAIQIIKISG 216 +L++ L N+ R L S I ++ T + D +LR K S L A + IKISG Sbjct: 332 NLQIALGNLIRD-LKSLINQLYQFRIT-CSYDEILRFKNSAALAATRDIKISG 382 >SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 6500 Score = 27.1 bits (57), Expect = 9.4 Identities = 14/40 (35%), Positives = 24/40 (60%) Frame = +1 Query: 301 ANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEK 420 A+I+ A TP++ DK+KV + + + A ++EL EK Sbjct: 1812 ADIIKAATPLEQDKVKVV--AVAIGNEADVSELGNVSPEK 1849 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.315 0.131 0.350 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,496,797 Number of Sequences: 59808 Number of extensions: 278049 Number of successful extensions: 681 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 571 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 680 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1172759136 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.6 bits)
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