Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313E03f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 245 2e-65
SB_54147| Best HMM Match : No HMM Matches (HMM E-Value=.) 113 8e-26
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1) 99 2e-21
SB_3351| Best HMM Match : No HMM Matches (HMM E-Value=.) 78 5e-15
SB_30876| Best HMM Match : Ribosomal_S16 (HMM E-Value=7.1) 59 2e-09
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 50 1e-06
SB_59319| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_50789| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_8887| Best HMM Match : G-patch (HMM E-Value=1.2e-08) 28 4.1
SB_13397| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_20714| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_39101| Best HMM Match : RVT_1 (HMM E-Value=2.4e-38) 27 9.4
SB_52463| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 531
Score = 245 bits (599), Expect = 2e-65
Identities = 122/173 (70%), Positives = 143/173 (82%)
Frame = +1
Query: 1 AKQALAEASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSG 180
A++AL A+ DH + + R DL NIARTTLSSKIL H++HF KLAVDAVLRLKGSG
Sbjct: 134 AEKALEAAAVDHSSDPEK--FREDLMNIARTTLSSKILVQHRDHFAKLAVDAVLRLKGSG 191
Query: 181 NLKAIQIIKISGGLLEESFLDEGFLLNKKVGVHQPKKVENANILIANTPMDTDKIKVFGS 360
+L AIQIIK GG + +SFLDEGFLL+KK+GV+QPKK+ENA ILIANTPMD DKIKVFGS
Sbjct: 192 DLNAIQIIKKLGGGMVDSFLDEGFLLDKKIGVNQPKKIENAKILIANTPMDADKIKVFGS 251
Query: 361 TIKVDSMAKIAELEVAEKEKMKDKVNKILAHKCNVFINRQLIYNYPEQLFADA 519
++VDS AKIA+LE+AEK+KMK+KV I+ H N FINRQLIYNYPEQLFADA
Sbjct: 252 RVRVDSTAKIADLEMAEKQKMKEKVEMIIKHDINCFINRQLIYNYPEQLFADA 304
>SB_54147| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 74
Score = 113 bits (272), Expect = 8e-26
Identities = 51/73 (69%), Positives = 62/73 (84%)
Frame = +1
Query: 256 LNKKVGVHQPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEKMKDKV 435
++KK+GV+QPKK+ENA ILIANTPMD DK+KVFGS ++VDS AKIAELE AEK+KMKDKV
Sbjct: 1 MDKKIGVNQPKKIENAKILIANTPMDADKVKVFGSRVRVDSTAKIAELEKAEKQKMKDKV 60
Query: 436 NKILAHKCNVFIN 474
I+ H N F+N
Sbjct: 61 EMIIKHGINCFVN 73
>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
Length = 144
Score = 99.1 bits (236), Expect = 2e-21
Identities = 53/83 (63%), Positives = 63/83 (75%)
Frame = +1
Query: 1 AKQALAEASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSG 180
A++AL A+ DH + + R DL NIARTTLSSKIL H++HF KLAVDAVLRLKGSG
Sbjct: 52 AEKALEAAAVDHSSDPEK--FRDDLMNIARTTLSSKILVQHRDHFAKLAVDAVLRLKGSG 109
Query: 181 NLKAIQIIKISGGLLEESFLDEG 249
+L AIQIIK GG + +SFLDEG
Sbjct: 110 DLNAIQIIKKLGGGMVDSFLDEG 132
>SB_3351| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 77.8 bits (183), Expect = 5e-15
Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 4/165 (2%)
Frame = +1
Query: 34 HQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGNLKAIQIIKIS 213
H K + +R LE A T LSSK+++ KE F K+ VDAV+ L L I + K+S
Sbjct: 11 HVKKNDAGEMRQLLERCAATALSSKLIATQKEFFAKMVVDAVMMLDELLPLDMIGMKKVS 70
Query: 214 GGLLEESFLDEGFLLNKKVGV----HQPKKVENANILIANTPMDTDKIKVFGSTIKVDSM 381
GG LE+S L EG K QPK + I + N ++ K + + +++D++
Sbjct: 71 GGALEDSMLIEGVAFKKTFSYAGFEMQPKTYNHCKIALLNVELEL-KAEKENAEVRLDNV 129
Query: 382 AKIAELEVAEKEKMKDKVNKILAHKCNVFINRQLIYNYPEQLFAD 516
+ AE + + DK++K++ V +++ I + Q FAD
Sbjct: 130 KDYQSIVDAEWDILYDKLDKVVKSGAKVVLSKLPIGDVATQYFAD 174
>SB_30876| Best HMM Match : Ribosomal_S16 (HMM E-Value=7.1)
Length = 131
Score = 59.3 bits (137), Expect = 2e-09
Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 8/110 (7%)
Frame = +1
Query: 85 ARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGN-------LKAIQIIKISGGLLEESFLD 243
A T LSSK++ + F + VDAV+ +K +GN +KAI ++K GG +ES L
Sbjct: 17 ANTALSSKLIGQQGDFFANMIVDAVMAVKRTGNKGEAKYPIKAINVLKAHGGSAKESILV 76
Query: 244 EGFLLNKKVGVH-QPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKI 390
+G+ LN + PK+V NA I + + K+ + G ++ VD K+
Sbjct: 77 DGYALNCTIASQAMPKQVTNAKIACLDFTLQKAKMHL-GVSVVVDDPEKL 125
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 50.0 bits (114), Expect = 1e-06
Identities = 38/134 (28%), Positives = 69/134 (51%), Gaps = 5/134 (3%)
Frame = +1
Query: 85 ARTTLSSKILSNHKEHFTKLAVDAVLRL----KGSGNLKAIQIIKISGGLLEESFLDEGF 252
A TTL SKI+S ++AVDAVL + + + + I++ GG L+++ L +G
Sbjct: 167 AMTTLGSKIVSRCHRPLAEIAVDAVLSVADLERKDVDFELIKVEGKEGGKLDDTVLVKGV 226
Query: 253 LLNKKVGVHQ-PKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEKMKD 429
+++K + Q PK V++A I I P + K K + V ++ +L+ E+EK +
Sbjct: 227 VVDKDMSHPQMPKVVKDAKIAILTCPFEPPKPKT-KHKLDVATVEDYKKLQEYEREKFTE 285
Query: 430 KVNKILAHKCNVFI 471
+ ++ N+ I
Sbjct: 286 MIKQVKDTGANLAI 299
>SB_59319| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 28
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +1
Query: 349 VFGSTIKVDSMAKIAELEVAEKEKMKDK 432
VFGS ++VDS AKIA +E +K K K
Sbjct: 1 VFGSRVRVDSTAKIAGVESRKKWKRTPK 28
>SB_50789| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 777
Score = 29.5 bits (63), Expect = 1.8
Identities = 20/63 (31%), Positives = 34/63 (53%)
Frame = +1
Query: 28 FDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGNLKAIQIIK 207
F Q LN A L V L+NIAR + +I + +E F + D +L ++ S + + ++ +
Sbjct: 68 FFMQAQLNIACLVVMLDNIARN--NRRIRKSGREEFLRKEEDNLLGIRSSESSRIKRVTR 125
Query: 208 ISG 216
SG
Sbjct: 126 NSG 128
>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 762
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +1
Query: 64 RVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLK 171
R L N+A+T+L +K+ + + T++ VDAVL ++
Sbjct: 247 RDTLINVAKTSLRTKVRTELADLLTEVVVDAVLTIR 282
>SB_8887| Best HMM Match : G-patch (HMM E-Value=1.2e-08)
Length = 739
Score = 28.3 bits (60), Expect = 4.1
Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Frame = +1
Query: 97 LSSKILSNHKEHFTKLAVDAVLRLKGSGNLKAIQIIKISGGLLEESFL-DE--GFLLNKK 267
L SKI+S+ + HF + + +G+ +LK+ S + + F+ DE G +
Sbjct: 190 LQSKIVSSKELHFFEPTQISTSHEQGNQDLKSALAEAASAAMTKSGFVFDERTGLYYDWN 249
Query: 268 VGV-HQPKK--VENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEKMKDKVN 438
G+ + P+ N N T ++ + F S + + ++A A+ V ++++ K+K
Sbjct: 250 SGLYYNPRTCLYYNNNTGTYYTYNESSRSYDFHSQVDIQAIANTAQESVEKQKRRKEKKI 309
Query: 439 KILA 450
K LA
Sbjct: 310 KGLA 313
>SB_13397| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 513
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 325 PMDTDKIKVFGSTIKVDSMAKIAELEVAEKEKMKDKVNKILAH 453
P+ T I+VF I D + KIA+ E+ E K + + H
Sbjct: 399 PILTKLIRVFRRQILEDDLDKIAKTEIHEDSKFMEAIELFTHH 441
>SB_20714| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 494
Score = 27.5 bits (58), Expect = 7.1
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = +1
Query: 256 LNKKVGVHQPKKVENANILIANTPMDTDKIKVFGSTI-KVDSMAKIAELEVAEKEKMKDK 432
+N +G K ENA + N + + + I ++++ +AE K +D
Sbjct: 28 INANLGESVTLKAENAALKAENANLKASMLVDVSAKIGELENQLSELTHRLAEVVKERDG 87
Query: 433 VNKILAHKCNVFINRQLIY 489
+ K L + N F NR+ ++
Sbjct: 88 LRKELGKEKNTFFNRESLF 106
>SB_39101| Best HMM Match : RVT_1 (HMM E-Value=2.4e-38)
Length = 856
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +1
Query: 334 TDKIKVFGSTIKVDSMAKIAELEVAEKEKMKDKVNKILAHK 456
T+K F +++ ++AE+EV E+ D+ ++ HK
Sbjct: 300 TEKTLTFAKALEIAQSMEMAEIEVVGIERALDRPDRAAKHK 340
>SB_52463| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1184
Score = 27.1 bits (57), Expect = 9.4
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = +1
Query: 58 SLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGNLKAIQIIKISG 216
+L++ L N+ R L S I ++ T + D +LR K S L A + IKISG
Sbjct: 332 NLQIALGNLIRD-LKSLINQLYQFRIT-CSYDEILRFKNSAALAATRDIKISG 382
>SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6500
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 301 ANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEK 420
A+I+ A TP++ DK+KV + + + A ++EL EK
Sbjct: 1812 ADIIKAATPLEQDKVKVV--AVAIGNEADVSELGNVSPEK 1849
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.315 0.131 0.350
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,496,797
Number of Sequences: 59808
Number of extensions: 278049
Number of successful extensions: 681
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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