Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313E03f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 230 4e-61
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 73 2e-13
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 62 3e-10
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 56 1e-08
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 56 1e-08
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 55 3e-08
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 39 0.002
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 39 0.002
At5g48300.1 68418.m05966 glucose-1-phosphate adenylyltransferase... 29 1.9
At1g19700.1 68414.m02457 homeobox-leucine zipper family protein ... 29 1.9
At3g27290.1 68416.m03411 F-box family protein-related contains w... 28 4.4
At1g80960.3 68414.m09501 F-box protein-related contains weak hit... 27 5.8
At1g80960.2 68414.m09500 F-box protein-related contains weak hit... 27 5.8
At1g80960.1 68414.m09499 F-box protein-related contains weak hit... 27 5.8
At1g64960.1 68414.m07363 expressed protein 27 5.8
At2g37080.1 68415.m04550 myosin heavy chain-related low similari... 27 7.7
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 230 bits (563), Expect = 4e-61
Identities = 110/173 (63%), Positives = 139/173 (80%)
Frame = +1
Query: 1 AKQALAEASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSG 180
A+ AL + D++ N + R DL IA TTL SKILS KEHF ++AVDAV RLKGS
Sbjct: 132 ARNALLKRVIDNKDNAEK--FRSDLLKIAMTTLCSKILSQDKEHFAEMAVDAVFRLKGST 189
Query: 181 NLKAIQIIKISGGLLEESFLDEGFLLNKKVGVHQPKKVENANILIANTPMDTDKIKVFGS 360
NL+AIQIIK GG L++SFLDEGF+L+KK+G+ QPK++ENANIL+ANT MDTDK+K++G+
Sbjct: 190 NLEAIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENANILVANTAMDTDKVKIYGA 249
Query: 361 TIKVDSMAKIAELEVAEKEKMKDKVNKILAHKCNVFINRQLIYNYPEQLFADA 519
++VDSM K+AE+E AEKEKMKDKV KI+ H N F+NRQLIYN+PE+LFADA
Sbjct: 250 RVRVDSMTKVAEIEGAEKEKMKDKVKKIIGHGINCFVNRQLIYNFPEELFADA 302
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 72.5 bits (170), Expect = 2e-13
Identities = 48/152 (31%), Positives = 74/152 (48%), Gaps = 4/152 (2%)
Frame = +1
Query: 73 LENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGNLKAIQIIKISGGLLEESFLDEGF 252
L A TTLSSK++ KE F + VDAV+ + L I I K+ GG + +SFL +G
Sbjct: 158 LAKCAATTLSSKLIGGEKEFFATMVVDAVMAIGNDDRLNLIGIKKVPGGNMRDSFLVDGV 217
Query: 253 LLNKKVGV----HQPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEK 420
K QPKK N IL+ N ++ K + + I++ ++ + AE
Sbjct: 218 AFKKTFSYAGFEQQPKKFLNPKILLLNIELEL-KSEKENAEIRLSDPSQYQSIVDAEWNI 276
Query: 421 MKDKVNKILAHKCNVFINRQLIYNYPEQLFAD 516
+ DK++K + V ++R I + Q FAD
Sbjct: 277 IYDKLDKCVESGAKVVLSRLAIGDLATQYFAD 308
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 61.7 bits (143), Expect = 3e-10
Identities = 42/160 (26%), Positives = 80/160 (50%), Gaps = 8/160 (5%)
Frame = +1
Query: 64 RVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGN-------LKAIQIIKISGGL 222
+V L N A+T++SSK++S + F L V+AVL +K + +K I I+K G
Sbjct: 148 KVPLINCAKTSMSSKLISGDSDFFANLVVEAVLSVKMTNQRGEIKYPIKGINILKAHGQS 207
Query: 223 LEESFLDEGFLLNK-KVGVHQPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAEL 399
+S+L G+ LN + P +V A I + + K+++ G + V+ ++ ++
Sbjct: 208 ARDSYLLNGYALNTGRAAQGMPLRVSPAKIACLDFNLQKTKMQL-GVQVVVNDPRELEKI 266
Query: 400 EVAEKEKMKDKVNKILAHKCNVFINRQLIYNYPEQLFADA 519
E + K+++ K+L NV + + I + + F +A
Sbjct: 267 RQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEA 306
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 56.0 bits (129), Expect = 1e-08
Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 5/122 (4%)
Frame = +1
Query: 91 TTLSSKILSNHKEHFTKLAVDAVLRL----KGSGNLKAIQIIKISGGLLEESFLDEGFLL 258
TTLSSKI++ K ++AV AVL + + NL I++ GG LE++ L G L+
Sbjct: 91 TTLSSKIVNRCKRSLAEIAVKAVLAVADLERRDVNLDLIKVEGKVGGKLEDTELIYGILI 150
Query: 259 NKKVGVHQ-PKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEKMKDKV 435
+K + Q PK++E+A+I I P + K K + +D++ K L E++ + V
Sbjct: 151 DKDMSHPQMPKQIEDAHIAILTCPFEPPKPKT-KHKVDIDTVEKFETLRKQEQQYFDEMV 209
Query: 436 NK 441
K
Sbjct: 210 QK 211
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 56.0 bits (129), Expect = 1e-08
Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 5/122 (4%)
Frame = +1
Query: 91 TTLSSKILSNHKEHFTKLAVDAVLRL----KGSGNLKAIQIIKISGGLLEESFLDEGFLL 258
TTLSSKI++ K ++AV AVL + + NL I++ GG LE++ L G L+
Sbjct: 167 TTLSSKIVNRCKRSLAEIAVKAVLAVADLERRDVNLDLIKVEGKVGGKLEDTELIYGILI 226
Query: 259 NKKVGVHQ-PKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEKMKDKV 435
+K + Q PK++E+A+I I P + K K + +D++ K L E++ + V
Sbjct: 227 DKDMSHPQMPKQIEDAHIAILTCPFEPPKPKT-KHKVDIDTVEKFETLRKQEQQYFDEMV 285
Query: 436 NK 441
K
Sbjct: 286 QK 287
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 55.2 bits (127), Expect = 3e-08
Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 7/152 (4%)
Frame = +1
Query: 52 EASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSG-----NLKAIQIIKISG 216
E + R L A T+L+SK++S + LAVDAVL + +L+ I+I+K G
Sbjct: 152 ELTDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDAVLSVIDPEKPEIVDLRDIKIVKKLG 211
Query: 217 GLLEESFLDEGFLLNKKV--GVHQPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKI 390
G ++++ +G + +KKV P +VENA I + + K + +I V ++
Sbjct: 212 GTVDDTHTVKGLVFDKKVSRAAGGPTRVENAKIAVIQFQISPPKTDI-EQSIVVSDYTQM 270
Query: 391 AELEVAEKEKMKDKVNKILAHKCNVFINRQLI 486
+ E+ + + KI A CNV + ++ I
Sbjct: 271 DRILKEERNYILGMIKKIKATGCNVLLIQKSI 302
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 39.1 bits (87), Expect = 0.002
Identities = 33/137 (24%), Positives = 70/137 (51%), Gaps = 6/137 (4%)
Frame = +1
Query: 73 LENIARTTLSSKILSNHKEHFTKLAVDAVLRLK---GSGNLKAIQIIKISGGLLEESFLD 243
L+ +ARTTL +K+ + T + V++VL ++ + +L ++I+ + ++ L
Sbjct: 151 LKMVARTTLRTKLYEGLADQLTDIVVNSVLCIRKPEEAIDLFMVEIMHMRHKFDVDTRLV 210
Query: 244 EGFLLNKKVGVHQP---KKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEK 414
EG +L+ G P ++ EN +IL N ++ +K ++ ++ + A + AE+
Sbjct: 211 EGLVLDH--GSRHPDMKRRAENCHILTCNVSLEYEKSEINAGFFYSNAEQREA-MVTAER 267
Query: 415 EKMKDKVNKILAHKCNV 465
+ ++V KI+ K V
Sbjct: 268 RSVDERVKKIIELKKKV 284
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 39.1 bits (87), Expect = 0.002
Identities = 33/137 (24%), Positives = 69/137 (50%), Gaps = 6/137 (4%)
Frame = +1
Query: 73 LENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSG---NLKAIQIIKISGGLLEESFLD 243
L+ +ARTTL +K+ + T + V++VL ++ +L ++I+ + ++ L
Sbjct: 151 LKMVARTTLRTKLYEGLADQLTDIVVNSVLCIRKPQEPIDLFMVEIMHMRHKFDVDTRLV 210
Query: 244 EGFLLNKKVGVHQP---KKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEK 414
EG +L+ G P ++ EN +IL N ++ +K ++ ++ + A + AE+
Sbjct: 211 EGLVLDH--GSRHPDMKRRAENCHILTCNVSLEYEKSEINAGFFYSNAEQREA-MVTAER 267
Query: 415 EKMKDKVNKILAHKCNV 465
+ ++V KI+ K V
Sbjct: 268 RSVDERVQKIIELKNKV 284
>At5g48300.1 68418.m05966 glucose-1-phosphate adenylyltransferase
small subunit 1 (APS1) / ADP-glucose pyrophosphorylase
(ADG1) identical to SP|P55228
Length = 520
Score = 29.1 bits (62), Expect = 1.9
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +1
Query: 280 QPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEK 420
Q + +A+I +A PMD + FG +K+D +I +E AEK K
Sbjct: 226 QAHRETDADITVAALPMDEQRATAFG-LMKIDEEGRI--IEFAEKPK 269
>At1g19700.1 68414.m02457 homeobox-leucine zipper family protein
similar to BEL1-like homeodomain 1 (GI:13877517)
[Arabidopsis thaliana]; similar to homeodomain protein
GI:7239157 from (Malus domestica); contains weak hit to
Pfam profile PF00046: Homeobox domain
Length = 538
Score = 29.1 bits (62), Expect = 1.9
Identities = 19/73 (26%), Positives = 38/73 (52%)
Frame = +1
Query: 229 ESFLDEGFLLNKKVGVHQPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVA 408
++ LDE + K++ KK++ + + + +I+ G + DS K EL
Sbjct: 176 QNLLDEVVSVKKELNQMGKKKMK-----VNDFNSGSKEIEGGGGELSSDSNGKSIELSTI 230
Query: 409 EKEKMKDKVNKIL 447
E+E++++K NK+L
Sbjct: 231 EREELQNKKNKLL 243
>At3g27290.1 68416.m03411 F-box family protein-related contains weak
similarity to PPA [Mus musculus] GP|18568225|gb|AAL75967
Length = 382
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 130 HFTKLAVDAVLRLKGSGNLKAIQIIKISGGLLEESFLDEGFL 255
H TKL+V LRL +G + ++ +K S L +S + G L
Sbjct: 219 HLTKLSVSGCLRLSTAGLVSTLRDLKSSNRLGVKSLITGGAL 260
>At1g80960.3 68414.m09501 F-box protein-related contains weak hit to
Pfam PF00646: F-box domain
Length = 462
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +1
Query: 28 FDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGNLKA 192
FD +KN+ ++ +D N TL +++++NH+ H + V G+G L +
Sbjct: 94 FDMRKNIINSNNTLDGSNPV-ATLITQVINNHRGHLESCVIIHVPYQGGNGMLNS 147
>At1g80960.2 68414.m09500 F-box protein-related contains weak hit to
Pfam PF00646: F-box domain
Length = 486
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +1
Query: 28 FDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGNLKA 192
FD +KN+ ++ +D N TL +++++NH+ H + V G+G L +
Sbjct: 94 FDMRKNIINSNNTLDGSNPV-ATLITQVINNHRGHLESCVIIHVPYQGGNGMLNS 147
>At1g80960.1 68414.m09499 F-box protein-related contains weak hit to
Pfam PF00646: F-box domain
Length = 486
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +1
Query: 28 FDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGNLKA 192
FD +KN+ ++ +D N TL +++++NH+ H + V G+G L +
Sbjct: 94 FDMRKNIINSNNTLDGSNPV-ATLITQVINNHRGHLESCVIIHVPYQGGNGMLNS 147
>At1g64960.1 68414.m07363 expressed protein
Length = 1168
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -2
Query: 157 LHQLLIL*NALCDLKGSLSSVW---SVRCFLN 71
+H+LL+ NA CDL G+ +S+ + RC +N
Sbjct: 694 VHKLLLSSNAFCDLIGTFTSIMQKTAYRCQIN 725
>At2g37080.1 68415.m04550 myosin heavy chain-related low similarity
to myosin heavy chain [Rana catesbeiana] GI:4249701
Length = 583
Score = 27.1 bits (57), Expect = 7.7
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Frame = +1
Query: 238 LDEGFLLNKKVGVHQPKKVENANILIANTPMDTDKIKVFGSTI---KVDSMAKIAELE-- 402
+DE +LN K+ + + N L N P DT ++K S + + + M K EL+
Sbjct: 374 VDENEILNSKIKEKEEVYLNLENSLNQNEPEDTGELKKLESDVMELRANLMDKEMELQSV 433
Query: 403 VAEKEKMKDKVNKILAHK 456
+++ E ++ ++ + + K
Sbjct: 434 MSQYESLRSEMETMQSEK 451
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.315 0.131 0.350
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,339,604
Number of Sequences: 28952
Number of extensions: 201942
Number of successful extensions: 565
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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