BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS313E03f (521 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 230 4e-61 At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 73 2e-13 At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 62 3e-10 At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 56 1e-08 At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 56 1e-08 At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 55 3e-08 At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 39 0.002 At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 39 0.002 At5g48300.1 68418.m05966 glucose-1-phosphate adenylyltransferase... 29 1.9 At1g19700.1 68414.m02457 homeobox-leucine zipper family protein ... 29 1.9 At3g27290.1 68416.m03411 F-box family protein-related contains w... 28 4.4 At1g80960.3 68414.m09501 F-box protein-related contains weak hit... 27 5.8 At1g80960.2 68414.m09500 F-box protein-related contains weak hit... 27 5.8 At1g80960.1 68414.m09499 F-box protein-related contains weak hit... 27 5.8 At1g64960.1 68414.m07363 expressed protein 27 5.8 At2g37080.1 68415.m04550 myosin heavy chain-related low similari... 27 7.7 >At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-PROT:P78371- T-complex protein 1, beta subunit (TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family Length = 527 Score = 230 bits (563), Expect = 4e-61 Identities = 110/173 (63%), Positives = 139/173 (80%) Frame = +1 Query: 1 AKQALAEASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSG 180 A+ AL + D++ N + R DL IA TTL SKILS KEHF ++AVDAV RLKGS Sbjct: 132 ARNALLKRVIDNKDNAEK--FRSDLLKIAMTTLCSKILSQDKEHFAEMAVDAVFRLKGST 189 Query: 181 NLKAIQIIKISGGLLEESFLDEGFLLNKKVGVHQPKKVENANILIANTPMDTDKIKVFGS 360 NL+AIQIIK GG L++SFLDEGF+L+KK+G+ QPK++ENANIL+ANT MDTDK+K++G+ Sbjct: 190 NLEAIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENANILVANTAMDTDKVKIYGA 249 Query: 361 TIKVDSMAKIAELEVAEKEKMKDKVNKILAHKCNVFINRQLIYNYPEQLFADA 519 ++VDSM K+AE+E AEKEKMKDKV KI+ H N F+NRQLIYN+PE+LFADA Sbjct: 250 RVRVDSMTKVAEIEGAEKEKMKDKVKKIIGHGINCFVNRQLIYNFPEELFADA 302 >At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-PROT:P80313 T-complex protein 1, eta subunit (TCP-1-eta) [Mus musculus]; contains Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family Length = 557 Score = 72.5 bits (170), Expect = 2e-13 Identities = 48/152 (31%), Positives = 74/152 (48%), Gaps = 4/152 (2%) Frame = +1 Query: 73 LENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGNLKAIQIIKISGGLLEESFLDEGF 252 L A TTLSSK++ KE F + VDAV+ + L I I K+ GG + +SFL +G Sbjct: 158 LAKCAATTLSSKLIGGEKEFFATMVVDAVMAIGNDDRLNLIGIKKVPGGNMRDSFLVDGV 217 Query: 253 LLNKKVGV----HQPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEK 420 K QPKK N IL+ N ++ K + + I++ ++ + AE Sbjct: 218 AFKKTFSYAGFEQQPKKFLNPKILLLNIELEL-KSEKENAEIRLSDPSQYQSIVDAEWNI 276 Query: 421 MKDKVNKILAHKCNVFINRQLIYNYPEQLFAD 516 + DK++K + V ++R I + Q FAD Sbjct: 277 IYDKLDKCVESGAKVVLSRLAIGDLATQYFAD 308 >At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP-1-alpha / chaperonin (CCT1) identical to SWISS-PROT:P28769- T-complex protein 1, alpha subunit (TCP-1-alpha) [Arabidopsis thaliana] Length = 545 Score = 61.7 bits (143), Expect = 3e-10 Identities = 42/160 (26%), Positives = 80/160 (50%), Gaps = 8/160 (5%) Frame = +1 Query: 64 RVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGN-------LKAIQIIKISGGL 222 +V L N A+T++SSK++S + F L V+AVL +K + +K I I+K G Sbjct: 148 KVPLINCAKTSMSSKLISGDSDFFANLVVEAVLSVKMTNQRGEIKYPIKGINILKAHGQS 207 Query: 223 LEESFLDEGFLLNK-KVGVHQPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAEL 399 +S+L G+ LN + P +V A I + + K+++ G + V+ ++ ++ Sbjct: 208 ARDSYLLNGYALNTGRAAQGMPLRVSPAKIACLDFNLQKTKMQL-GVQVVVNDPRELEKI 266 Query: 400 EVAEKEKMKDKVNKILAHKCNVFINRQLIYNYPEQLFADA 519 E + K+++ K+L NV + + I + + F +A Sbjct: 267 RQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEA 306 >At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative identical to SWISS-PROT:O04450- T-complex protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis thaliana]; strong similarity to SP|P54411 T-complex protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon) (TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family Length = 459 Score = 56.0 bits (129), Expect = 1e-08 Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 5/122 (4%) Frame = +1 Query: 91 TTLSSKILSNHKEHFTKLAVDAVLRL----KGSGNLKAIQIIKISGGLLEESFLDEGFLL 258 TTLSSKI++ K ++AV AVL + + NL I++ GG LE++ L G L+ Sbjct: 91 TTLSSKIVNRCKRSLAEIAVKAVLAVADLERRDVNLDLIKVEGKVGGKLEDTELIYGILI 150 Query: 259 NKKVGVHQ-PKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEKMKDKV 435 +K + Q PK++E+A+I I P + K K + +D++ K L E++ + V Sbjct: 151 DKDMSHPQMPKQIEDAHIAILTCPFEPPKPKT-KHKVDIDTVEKFETLRKQEQQYFDEMV 209 Query: 436 NK 441 K Sbjct: 210 QK 211 >At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative identical to SWISS-PROT:O04450- T-complex protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis thaliana]; strong similarity to SP|P54411 T-complex protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon) (TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family Length = 535 Score = 56.0 bits (129), Expect = 1e-08 Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 5/122 (4%) Frame = +1 Query: 91 TTLSSKILSNHKEHFTKLAVDAVLRL----KGSGNLKAIQIIKISGGLLEESFLDEGFLL 258 TTLSSKI++ K ++AV AVL + + NL I++ GG LE++ L G L+ Sbjct: 167 TTLSSKIVNRCKRSLAEIAVKAVLAVADLERRDVNLDLIKVEGKVGGKLEDTELIYGILI 226 Query: 259 NKKVGVHQ-PKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEKMKDKV 435 +K + Q PK++E+A+I I P + K K + +D++ K L E++ + V Sbjct: 227 DKDMSHPQMPKQIEDAHIAILTCPFEPPKPKT-KHKVDIDTVEKFETLRKQEQQYFDEMV 285 Query: 436 NK 441 K Sbjct: 286 QK 287 >At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-PROT:P50991- T-complex protein 1, delta subunit (TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family Length = 536 Score = 55.2 bits (127), Expect = 3e-08 Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 7/152 (4%) Frame = +1 Query: 52 EASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSG-----NLKAIQIIKISG 216 E + R L A T+L+SK++S + LAVDAVL + +L+ I+I+K G Sbjct: 152 ELTDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDAVLSVIDPEKPEIVDLRDIKIVKKLG 211 Query: 217 GLLEESFLDEGFLLNKKV--GVHQPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKI 390 G ++++ +G + +KKV P +VENA I + + K + +I V ++ Sbjct: 212 GTVDDTHTVKGLVFDKKVSRAAGGPTRVENAKIAVIQFQISPPKTDI-EQSIVVSDYTQM 270 Query: 391 AELEVAEKEKMKDKVNKILAHKCNVFINRQLI 486 + E+ + + KI A CNV + ++ I Sbjct: 271 DRILKEERNYILGMIKKIKATGCNVLLIQKSI 302 >At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-PROT:P80317 T-complex protein 1, zeta subunit (TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family Length = 535 Score = 39.1 bits (87), Expect = 0.002 Identities = 33/137 (24%), Positives = 70/137 (51%), Gaps = 6/137 (4%) Frame = +1 Query: 73 LENIARTTLSSKILSNHKEHFTKLAVDAVLRLK---GSGNLKAIQIIKISGGLLEESFLD 243 L+ +ARTTL +K+ + T + V++VL ++ + +L ++I+ + ++ L Sbjct: 151 LKMVARTTLRTKLYEGLADQLTDIVVNSVLCIRKPEEAIDLFMVEIMHMRHKFDVDTRLV 210 Query: 244 EGFLLNKKVGVHQP---KKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEK 414 EG +L+ G P ++ EN +IL N ++ +K ++ ++ + A + AE+ Sbjct: 211 EGLVLDH--GSRHPDMKRRAENCHILTCNVSLEYEKSEINAGFFYSNAEQREA-MVTAER 267 Query: 415 EKMKDKVNKILAHKCNV 465 + ++V KI+ K V Sbjct: 268 RSVDERVKKIIELKKKV 284 >At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-PROT:P80317- T-complex protein 1, zeta subunit (TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family Length = 535 Score = 39.1 bits (87), Expect = 0.002 Identities = 33/137 (24%), Positives = 69/137 (50%), Gaps = 6/137 (4%) Frame = +1 Query: 73 LENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSG---NLKAIQIIKISGGLLEESFLD 243 L+ +ARTTL +K+ + T + V++VL ++ +L ++I+ + ++ L Sbjct: 151 LKMVARTTLRTKLYEGLADQLTDIVVNSVLCIRKPQEPIDLFMVEIMHMRHKFDVDTRLV 210 Query: 244 EGFLLNKKVGVHQP---KKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEK 414 EG +L+ G P ++ EN +IL N ++ +K ++ ++ + A + AE+ Sbjct: 211 EGLVLDH--GSRHPDMKRRAENCHILTCNVSLEYEKSEINAGFFYSNAEQREA-MVTAER 267 Query: 415 EKMKDKVNKILAHKCNV 465 + ++V KI+ K V Sbjct: 268 RSVDERVQKIIELKNKV 284 >At5g48300.1 68418.m05966 glucose-1-phosphate adenylyltransferase small subunit 1 (APS1) / ADP-glucose pyrophosphorylase (ADG1) identical to SP|P55228 Length = 520 Score = 29.1 bits (62), Expect = 1.9 Identities = 17/47 (36%), Positives = 26/47 (55%) Frame = +1 Query: 280 QPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEK 420 Q + +A+I +A PMD + FG +K+D +I +E AEK K Sbjct: 226 QAHRETDADITVAALPMDEQRATAFG-LMKIDEEGRI--IEFAEKPK 269 >At1g19700.1 68414.m02457 homeobox-leucine zipper family protein similar to BEL1-like homeodomain 1 (GI:13877517) [Arabidopsis thaliana]; similar to homeodomain protein GI:7239157 from (Malus domestica); contains weak hit to Pfam profile PF00046: Homeobox domain Length = 538 Score = 29.1 bits (62), Expect = 1.9 Identities = 19/73 (26%), Positives = 38/73 (52%) Frame = +1 Query: 229 ESFLDEGFLLNKKVGVHQPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVA 408 ++ LDE + K++ KK++ + + + +I+ G + DS K EL Sbjct: 176 QNLLDEVVSVKKELNQMGKKKMK-----VNDFNSGSKEIEGGGGELSSDSNGKSIELSTI 230 Query: 409 EKEKMKDKVNKIL 447 E+E++++K NK+L Sbjct: 231 EREELQNKKNKLL 243 >At3g27290.1 68416.m03411 F-box family protein-related contains weak similarity to PPA [Mus musculus] GP|18568225|gb|AAL75967 Length = 382 Score = 27.9 bits (59), Expect = 4.4 Identities = 15/42 (35%), Positives = 23/42 (54%) Frame = +1 Query: 130 HFTKLAVDAVLRLKGSGNLKAIQIIKISGGLLEESFLDEGFL 255 H TKL+V LRL +G + ++ +K S L +S + G L Sbjct: 219 HLTKLSVSGCLRLSTAGLVSTLRDLKSSNRLGVKSLITGGAL 260 >At1g80960.3 68414.m09501 F-box protein-related contains weak hit to Pfam PF00646: F-box domain Length = 462 Score = 27.5 bits (58), Expect = 5.8 Identities = 15/55 (27%), Positives = 29/55 (52%) Frame = +1 Query: 28 FDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGNLKA 192 FD +KN+ ++ +D N TL +++++NH+ H + V G+G L + Sbjct: 94 FDMRKNIINSNNTLDGSNPV-ATLITQVINNHRGHLESCVIIHVPYQGGNGMLNS 147 >At1g80960.2 68414.m09500 F-box protein-related contains weak hit to Pfam PF00646: F-box domain Length = 486 Score = 27.5 bits (58), Expect = 5.8 Identities = 15/55 (27%), Positives = 29/55 (52%) Frame = +1 Query: 28 FDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGNLKA 192 FD +KN+ ++ +D N TL +++++NH+ H + V G+G L + Sbjct: 94 FDMRKNIINSNNTLDGSNPV-ATLITQVINNHRGHLESCVIIHVPYQGGNGMLNS 147 >At1g80960.1 68414.m09499 F-box protein-related contains weak hit to Pfam PF00646: F-box domain Length = 486 Score = 27.5 bits (58), Expect = 5.8 Identities = 15/55 (27%), Positives = 29/55 (52%) Frame = +1 Query: 28 FDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGNLKA 192 FD +KN+ ++ +D N TL +++++NH+ H + V G+G L + Sbjct: 94 FDMRKNIINSNNTLDGSNPV-ATLITQVINNHRGHLESCVIIHVPYQGGNGMLNS 147 >At1g64960.1 68414.m07363 expressed protein Length = 1168 Score = 27.5 bits (58), Expect = 5.8 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 3/32 (9%) Frame = -2 Query: 157 LHQLLIL*NALCDLKGSLSSVW---SVRCFLN 71 +H+LL+ NA CDL G+ +S+ + RC +N Sbjct: 694 VHKLLLSSNAFCDLIGTFTSIMQKTAYRCQIN 725 >At2g37080.1 68415.m04550 myosin heavy chain-related low similarity to myosin heavy chain [Rana catesbeiana] GI:4249701 Length = 583 Score = 27.1 bits (57), Expect = 7.7 Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 5/78 (6%) Frame = +1 Query: 238 LDEGFLLNKKVGVHQPKKVENANILIANTPMDTDKIKVFGSTI---KVDSMAKIAELE-- 402 +DE +LN K+ + + N L N P DT ++K S + + + M K EL+ Sbjct: 374 VDENEILNSKIKEKEEVYLNLENSLNQNEPEDTGELKKLESDVMELRANLMDKEMELQSV 433 Query: 403 VAEKEKMKDKVNKILAHK 456 +++ E ++ ++ + + K Sbjct: 434 MSQYESLRSEMETMQSEK 451 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.315 0.131 0.350 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,339,604 Number of Sequences: 28952 Number of extensions: 201942 Number of successful extensions: 565 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 548 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 563 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 957410176 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.6 bits)
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