Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313E02f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    24   0.82 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   1.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.5  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   3.3  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   3.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   7.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.7  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 233 LGFRKMALGCTQEVRTAQPGYGIPGLHHVQGVK 331
           LG + +  G  Q V+TAQ   G+ G+  VQGV+
Sbjct: 835 LGVQGVQQG-VQGVQTAQGVQGVQGVQGVQGVQ 866


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 7/31 (22%), Positives = 15/31 (48%)
 Frame = -2

Query: 451 HFDPFSDPIYV*CHSGLQPLSGTDQDEALLH 359
           HF P +  +   CH   + L+  +  +++ H
Sbjct: 395 HFQPLNSAVCALCHKVFRTLNSLNNHKSIYH 425


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = +1

Query: 142 WISALRLYDLSSANPDPVTTFEDISKNVSRV 234
           ++SAL ++   + NPD    ++D+  N +++
Sbjct: 13  FLSALVVHGAVAGNPDAKRLYDDLLSNYNKL 43


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = +1

Query: 142 WISALRLYDLSSANPDPVTTFEDISKNVSRV 234
           ++SAL ++   + NPD    ++D+  N +++
Sbjct: 13  FLSALVVHGAVAGNPDAKRLYDDLLSNYNKL 43


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -3

Query: 270 SCVHPSAIFLKPNSRYVFGDVLKSCDRV 187
           SC+ P ++F K +    F    K C  +
Sbjct: 54  SCLTPDSVFFKSHITEAFQTQCKKCTEI 81


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -3

Query: 270 SCVHPSAIFLKPNSRYVFGDVLKSCDRV 187
           SC+ P ++F K +    F    K C  +
Sbjct: 54  SCLTPDSVFFKSHITEAFQTQCKKCTEI 81


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 358 SPELELGISFDTLYVVQPWDPI 293
           S ++E+GI     Y+   WD I
Sbjct: 184 SNQIEVGIDLTDYYISVEWDII 205


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 248 MALGCTQEVRTAQPG 292
           + LGCT+    A+PG
Sbjct: 7   IVLGCTRSAHFARPG 21


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,029
Number of Sequences: 438
Number of extensions: 3650
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)