Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313E02f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g18140.1 68416.m02306 transducin family protein / WD-40 repea... 111 3e-25
At2g22040.1 68415.m02617 transducin family protein / WD-40 repea... 104 4e-23
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 53 1e-07
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 53 1e-07
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 53 1e-07
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 53 1e-07
At1g79990.1 68414.m09356 coatomer protein complex, subunit beta ... 52 2e-07
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 50 9e-07
At2g43770.1 68415.m05441 transducin family protein / WD-40 repea... 49 2e-06
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 49 2e-06
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 48 3e-06
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 47 7e-06
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 47 7e-06
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 47 7e-06
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 47 7e-06
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 47 7e-06
At4g02730.1 68417.m00372 transducin family protein / WD-40 repea... 47 9e-06
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 45 4e-05
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 45 4e-05
At3g49660.1 68416.m05427 transducin family protein / WD-40 repea... 42 2e-04
At2g19430.1 68415.m02267 transducin family protein / WD-40 repea... 41 6e-04
At5g60940.2 68418.m07645 transducin family protein / WD-40 repea... 40 8e-04
At5g60940.1 68418.m07644 transducin family protein / WD-40 repea... 40 8e-04
At5g43920.1 68418.m05372 transducin family protein / WD-40 repea... 40 8e-04
At5g15550.2 68418.m01821 transducin family protein / WD-40 repea... 40 8e-04
At5g15550.1 68418.m01820 transducin family protein / WD-40 repea... 40 8e-04
At2g05720.1 68415.m00613 transducin family protein / WD-40 repea... 40 8e-04
At4g21520.1 68417.m03110 transducin family protein / WD-40 repea... 40 0.001
At1g03110.1 68414.m00288 transducin family protein / WD-40 repea... 38 0.004
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 37 0.007
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p... 37 0.007
At1g24530.1 68414.m03088 transducin family protein / WD-40 repea... 37 0.007
At4g04940.1 68417.m00718 transducin family protein / WD-40 repea... 36 0.012
At3g15610.1 68416.m01980 transducin family protein / WD-40 repea... 36 0.012
At2g33340.2 68415.m04087 transducin family protein / WD-40 repea... 36 0.012
At2g33340.1 68415.m04086 transducin family protein / WD-40 repea... 36 0.012
At1g73720.1 68414.m08536 transducin family protein / WD-40 repea... 36 0.012
At5g56190.2 68418.m07011 WD-40 repeat family protein contains 3 ... 36 0.017
At5g56190.1 68418.m07010 WD-40 repeat family protein contains 3 ... 36 0.017
At3g05090.2 68416.m00553 transducin family protein / WD-40 repea... 36 0.017
At3g05090.1 68416.m00552 transducin family protein / WD-40 repea... 36 0.017
At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha... 36 0.017
At1g10580.1 68414.m01192 transducin family protein / WD-40 repea... 36 0.017
At5g56130.1 68418.m07002 transducin family protein / WD-40 repea... 36 0.022
At5g50230.1 68418.m06221 transducin family protein / WD-40 repea... 36 0.022
At1g48630.1 68414.m05440 guanine nucleotide-binding family prote... 36 0.022
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 35 0.029
At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2 pro... 35 0.038
At5g12920.1 68418.m01482 expressed protein contains 3 weak WD-40... 35 0.038
At1g52730.2 68414.m05959 transducin family protein / WD-40 repea... 35 0.038
At1g52730.1 68414.m05958 transducin family protein / WD-40 repea... 35 0.038
At1g18080.1 68414.m02238 WD-40 repeat family protein / auxin-dep... 35 0.038
At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6 ... 34 0.050
At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6 ... 34 0.050
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 34 0.050
At5g08560.1 68418.m01018 transducin family protein / WD-40 repea... 34 0.067
At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic regul... 33 0.088
At3g18130.1 68416.m02305 guanine nucleotide-binding family prote... 33 0.088
At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic regul... 33 0.088
At2g47990.1 68415.m06006 transducin family protein / WD-40 repea... 33 0.088
At2g46290.1 68415.m05758 eukaryotic translation initiation facto... 33 0.088
At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha... 33 0.088
At4g29860.1 68417.m04250 transducin family protein / WD-40 repea... 33 0.12
At2g26490.1 68415.m03178 transducin family protein / WD-40 repea... 33 0.15
At3g18950.1 68416.m02405 transducin family protein / WD-40 repea... 32 0.20
At1g29260.1 68414.m03578 peroxisomal targeting signal type 2 rec... 32 0.20
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 32 0.27
At4g11270.1 68417.m01823 transducin family protein / WD-40 repea... 32 0.27
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea... 32 0.27
At1g47610.1 68414.m05288 transducin family protein / WD-40 repea... 32 0.27
At1g04140.2 68414.m00404 transducin family protein / WD-40 repea... 32 0.27
At1g04140.1 68414.m00403 transducin family protein / WD-40 repea... 32 0.27
At5g64730.1 68418.m08140 transducin family protein / WD-40 repea... 31 0.36
At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5 ... 31 0.36
At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pf... 31 0.36
At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pf... 31 0.36
At1g49450.1 68414.m05543 transducin family protein / WD-40 repea... 31 0.36
At1g15470.1 68414.m01860 transducin family protein / WD-40 repea... 31 0.36
At5g63010.1 68418.m07905 WD-40 repeat family protein contains 4 ... 31 0.47
At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat fam... 31 0.47
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea... 31 0.47
At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pf... 31 0.62
At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5 ... 31 0.62
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf... 31 0.62
At2g46280.3 68415.m05757 eukaryotic translation initiation facto... 31 0.62
At2g46280.2 68415.m05756 eukaryotic translation initiation facto... 31 0.62
At2g46280.1 68415.m05755 eukaryotic translation initiation facto... 31 0.62
At2g40360.1 68415.m04977 transducin family protein / WD-40 repea... 31 0.62
At5g27080.1 68418.m03231 WD-40 repeat family protein contains 5 ... 30 0.82
At4g35370.1 68417.m05025 transducin family protein / WD-40 repea... 30 0.82
At4g29830.1 68417.m04246 transducin family protein / WD-40 repea... 30 0.82
At3g27640.1 68416.m03452 transducin family protein / WD-40 repea... 30 0.82
At1g24130.1 68414.m03044 transducin family protein / WD-40 repea... 30 0.82
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 30 0.82
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 30 0.82
At5g27945.1 68418.m03364 transducin family protein / WD-40 repea... 30 1.1
At5g11490.1 68418.m01341 adaptin family protein similar to SP|Q9... 30 1.1
At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5 ... 30 1.1
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea... 30 1.1
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 30 1.1
At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6 ... 30 1.1
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 30 1.1
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 30 1.1
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 30 1.1
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 30 1.1
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 30 1.1
At1g49540.1 68414.m05553 transducin family protein / WD-40 repea... 30 1.1
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea... 29 1.4
At5g45760.2 68418.m05626 transducin family protein / WD-40 repea... 29 1.4
At5g45760.1 68418.m05625 transducin family protein / WD-40 repea... 29 1.4
At4g21130.1 68417.m03055 transducin family protein / WD-40 repea... 29 1.4
At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene... 29 1.4
At2g08986.1 68415.m01009 hypothetical protein 29 1.4
At2g01330.1 68415.m00050 transducin family protein / WD-40 repea... 29 1.4
At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4 pro... 29 1.9
At4g34380.1 68417.m04884 transducin family protein / WD-40 repea... 29 1.9
At3g51930.1 68416.m05696 transducin family protein / WD-40 repea... 29 1.9
At2g18900.1 68415.m02205 transducin family protein / WD-40 repea... 29 1.9
At4g28450.1 68417.m04071 transducin family protein / WD-40 repea... 29 2.5
At4g18905.1 68417.m02787 transducin family protein / WD-40 repea... 29 2.5
At4g18900.1 68417.m02786 transducin family protein / WD-40 repea... 29 2.5
At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pf... 29 2.5
At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pf... 29 2.5
At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10... 29 2.5
At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10... 29 2.5
At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-rel... 29 2.5
At5g64630.2 68418.m08122 transducin family protein / WD-40 repea... 28 3.3
At5g64630.1 68418.m08121 transducin family protein / WD-40 repea... 28 3.3
At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pf... 28 3.3
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea... 28 3.3
At1g80670.1 68414.m09466 transducin family protein / WD-40 repea... 28 3.3
At1g65030.1 68414.m07371 transducin family protein / WD-40 repea... 28 3.3
At1g21650.1 68414.m02710 preprotein translocase secA family prot... 28 3.3
At1g20890.1 68414.m02616 expressed protein Location of ESTs OAO2... 28 3.3
At5g05480.1 68418.m00590 expressed protein 28 4.4
At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochro... 28 4.4
At3g50590.1 68416.m05533 transducin family protein / WD-40 repea... 28 4.4
At3g20740.1 68416.m02624 fertilization-independent endosperm pro... 28 4.4
At3g10530.1 68416.m01264 transducin family protein / WD-40 repea... 28 4.4
At3g09080.1 68416.m01067 transducin family protein / WD-40 repea... 28 4.4
At1g29980.2 68414.m03666 expressed protein contains Pfam profile... 28 4.4
At1g29980.1 68414.m03667 expressed protein contains Pfam profile... 28 4.4
At1g04510.1 68414.m00442 transducin family protein / WD-40 repea... 28 4.4
At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6 ... 27 5.8
At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1 pro... 27 5.8
At2g39680.1 68415.m04868 expressed protein 27 5.8
At1g80710.1 68414.m09470 transducin family protein / WD-40 repea... 27 5.8
At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pf... 27 5.8
At1g27470.1 68414.m03349 transducin-related / WD-40 repeat prote... 27 5.8
At1g09000.1 68414.m01004 NPK1-related protein kinase, putative (... 27 5.8
At5g23730.1 68418.m02782 transducin family protein / WD-40 repea... 27 7.7
At5g06500.1 68418.m00730 MADS-box family protein contains simila... 27 7.7
At4g05410.1 68417.m00823 transducin family protein / WD-40 repea... 27 7.7
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel... 27 7.7
At2g34510.1 68415.m04239 expressed protein contains Pfam profile... 27 7.7
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ... 27 7.7
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ... 27 7.7
At1g19750.1 68414.m02469 transducin family protein / WD-40 repea... 27 7.7
>At3g18140.1 68416.m02306 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Pop3 (GP:3434986) [Schizosaccharomyces pombe]
Length = 305
Score = 111 bits (267), Expect = 3e-25
Identities = 50/123 (40%), Positives = 83/123 (67%), Gaps = 1/123 (0%)
Frame = +1
Query: 154 LRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQK 333
+RL+D++S +P PV T++ + NV VGFQ + WMY+G ED T +IWD RA CQK
Sbjct: 58 IRLFDVNSNSPQPVMTYDSHTNNVMAVGFQCDAKWMYSGSEDGTVKIWDLRA---PGCQK 114
Query: 334 IFQVQAPVNAVMLHPDQSQIMVGDQSGIIHIWDLKTDQ-NEQLIPEAEASIQDIAIDPAG 510
++ A VN V+LHP+Q++++ GDQ+G I +WDL+ + + +L+PE + +++ + + G
Sbjct: 115 EYESVAAVNTVVLHPNQTELISGDQNGNIRVWDLRANSCSCELVPEVDTAVRSLTVMWDG 174
Query: 511 KMM 519
M+
Sbjct: 175 TMV 177
Score = 60.9 bits (141), Expect = 5e-10
Identities = 26/47 (55%), Positives = 32/47 (68%)
Frame = +2
Query: 2 VALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAA 142
V L T YDHTI+ W+A +G C RT+Q+PDS VN LEI+P AA
Sbjct: 6 VILATASYDHTIRFWEAETGRCYRTIQYPDSHVNRLEITPDKHYLAA 52
>At2g22040.1 68415.m02617 transducin family protein / WD-40 repeat
family protein similar to Pop3 (GI:3434986)
[Schizosaccharomyces pombe]; contains Pfam PF00400: WD
domain, G-beta repeat (6 copies, 2 weak);
Length = 312
Score = 104 bits (249), Expect = 4e-23
Identities = 53/124 (42%), Positives = 78/124 (62%), Gaps = 2/124 (1%)
Frame = +1
Query: 154 LRLYDLSSANPD-PVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQ 330
+RL+DL S NP PV F +KNV VGFQ G MY+G ED + +IWD R CQ
Sbjct: 63 IRLFDLRSYNPHIPVRNFVSHTKNVMAVGFQYTGHMMYSGSEDGSVKIWDLRVR---ECQ 119
Query: 331 KIFQVQAPVNAVMLHPDQSQIMVGDQSGIIHIWDLKTDQ-NEQLIPEAEASIQDIAIDPA 507
+ F+ +PVN V+LHP+Q++++ GDQ+G I +WDL+ D + +L+PE I+ + +
Sbjct: 120 REFRSVSPVNTVVLHPNQTELISGDQNGNIRVWDLRADLCSCELVPEVGTPIRSLTVMWD 179
Query: 508 GKMM 519
G M+
Sbjct: 180 GTMV 183
Score = 46.8 bits (106), Expect(2) = 1e-06
Identities = 19/40 (47%), Positives = 27/40 (67%)
Frame = +2
Query: 2 VALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISP 121
V L T +D TI+LWQA +G C + ++PD VN LE++P
Sbjct: 11 VYLATASHDQTIRLWQARTGRCYFSFRYPDLHVNRLELTP 50
Score = 27.5 bits (58), Expect = 5.8
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 238 FQKNGTWMYTGGEDCTARIWDPRA 309
F +G ++ T D TAR+W RA
Sbjct: 267 FSMDGEYLVTASSDTTARLWSMRA 290
Score = 22.6 bits (46), Expect(2) = 1e-06
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 113 ISPTSMVAAAGFQHYGYMI 169
+S T V A GFQ+ G+M+
Sbjct: 81 VSHTKNVMAVGFQYTGHMM 99
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 52.8 bits (121), Expect = 1e-07
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 2/117 (1%)
Frame = +1
Query: 118 TNIDGSSSWISALRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGT--WMYTGGEDCTAR 291
TN S+S +++++L S PDP T + K V+ V + G ++ TG +D TA+
Sbjct: 155 TNTFASASLDRTIKIWNLGS--PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAK 212
Query: 292 IWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMVGDQSGIIHIWDLKTDQNEQLI 462
+WD + ++ Q + V+AV HP+ I+ G + G + IW T + E +
Sbjct: 213 VWDYQT--KSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTL 267
Score = 31.5 bits (68), Expect = 0.36
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAG 145
L+TG DHT K+W + C++T+ V+++ P + G
Sbjct: 202 LITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITG 247
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Frame = +1
Query: 199 TFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAP-VNAVMLH 375
+FE V F W+ G +D R+++ + K+F+ + + V +H
Sbjct: 52 SFEVTELPVRSAKFIPRKQWVVAGADDMYIRVYNYNTMDKV---KVFEAHSDYIRCVAVH 108
Query: 376 PDQSQIMVGDQSGIIHIWD 432
P ++ +I +WD
Sbjct: 109 PTLPYVLSSSDDMLIKLWD 127
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 328 QKIFQVQAPVNAVMLHPDQSQIMVGDQSGIIHIWDLKT 441
+K Q V +V LHP + I+ SG + IW+ +T
Sbjct: 9 RKFAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQT 46
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 52.8 bits (121), Expect = 1e-07
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 2/117 (1%)
Frame = +1
Query: 118 TNIDGSSSWISALRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGT--WMYTGGEDCTAR 291
TN S+S +++++L S PDP T + K V+ V + G ++ TG +D TA+
Sbjct: 155 TNTFASASLDRTIKIWNLGS--PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAK 212
Query: 292 IWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMVGDQSGIIHIWDLKTDQNEQLI 462
+WD + ++ Q + V+AV HP+ I+ G + G + IW T + E +
Sbjct: 213 VWDYQT--KSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTL 267
Score = 31.5 bits (68), Expect = 0.36
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAG 145
L+TG DHT K+W + C++T+ V+++ P + G
Sbjct: 202 LITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITG 247
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Frame = +1
Query: 199 TFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAP-VNAVMLH 375
+FE V F W+ G +D R+++ + K+F+ + + V +H
Sbjct: 52 SFEVTELPVRSAKFIPRKQWVVAGADDMYIRVYNYNTMDKV---KVFEAHSDYIRCVAVH 108
Query: 376 PDQSQIMVGDQSGIIHIWD 432
P ++ +I +WD
Sbjct: 109 PTLPYVLSSSDDMLIKLWD 127
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 328 QKIFQVQAPVNAVMLHPDQSQIMVGDQSGIIHIWDLKT 441
+K Q V +V LHP + I+ SG + IW+ +T
Sbjct: 9 RKFAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQT 46
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 52.8 bits (121), Expect = 1e-07
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 2/117 (1%)
Frame = +1
Query: 118 TNIDGSSSWISALRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGT--WMYTGGEDCTAR 291
TN S+S +++++L S PDP T + K V+ V + G ++ TG +D TA+
Sbjct: 155 TNTFASASLDRTIKIWNLGS--PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAK 212
Query: 292 IWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMVGDQSGIIHIWDLKTDQNEQLI 462
+WD + ++ Q + V+AV HP+ I+ G + G + IW T + E +
Sbjct: 213 VWDYQT--KSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTL 267
Score = 31.5 bits (68), Expect = 0.36
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAG 145
L+TG DHT K+W + C++T+ V+++ P + G
Sbjct: 202 LITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITG 247
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Frame = +1
Query: 199 TFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAP-VNAVMLH 375
+FE V F W+ G +D R+++ + K+F+ + + V +H
Sbjct: 52 SFEVTELPVRSAKFIPRKQWVVAGADDMYIRVYNYNTMDKV---KVFEAHSDYIRCVAVH 108
Query: 376 PDQSQIMVGDQSGIIHIWD 432
P ++ +I +WD
Sbjct: 109 PTLPYVLSSSDDMLIKLWD 127
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 328 QKIFQVQAPVNAVMLHPDQSQIMVGDQSGIIHIWDLKT 441
+K Q V +V LHP + I+ SG + IW+ +T
Sbjct: 9 RKFAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQT 46
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 52.8 bits (121), Expect = 1e-07
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 2/117 (1%)
Frame = +1
Query: 118 TNIDGSSSWISALRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGT--WMYTGGEDCTAR 291
TN S+S +++++L S PDP T + K V+ V + G ++ TG +D TA+
Sbjct: 155 TNTFASASLDRTIKIWNLGS--PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAK 212
Query: 292 IWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMVGDQSGIIHIWDLKTDQNEQLI 462
+WD + ++ Q + V+AV HP+ I+ G + G + IW T + E +
Sbjct: 213 VWDYQT--KSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTL 267
Score = 32.3 bits (70), Expect = 0.20
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAG 145
L+TG DHT K+W + C++T++ V+++ P + G
Sbjct: 202 LITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITG 247
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Frame = +1
Query: 199 TFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAP-VNAVMLH 375
+FE V F W+ G +D R+++ + K+F+ + + V +H
Sbjct: 52 SFEVTELPVRSAKFVARKQWVVAGADDMYIRVYNYNTMDKV---KVFEAHSDYIRCVAVH 108
Query: 376 PDQSQIMVGDQSGIIHIWD 432
P ++ +I +WD
Sbjct: 109 PTLPYVLSSSDDMLIKLWD 127
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 328 QKIFQVQAPVNAVMLHPDQSQIMVGDQSGIIHIWDLKT 441
+K+ Q V +V LHP + I+ SG + IW+ +T
Sbjct: 9 RKLAQRSERVKSVDLHPTEPWILASLYSGTLCIWNYQT 46
>At1g79990.1 68414.m09356 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606)
[Homo sapiens]; similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:O55029) [Mus
musculus]
Length = 920
Score = 52.0 bits (119), Expect = 2e-07
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 2/117 (1%)
Frame = +1
Query: 118 TNIDGSSSWISALRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGT--WMYTGGEDCTAR 291
TN S+S +++++L S PDP T + K V+ V + G ++ TG +D TA+
Sbjct: 155 TNTFASASLDRTIKIWNLGS--PDPNFTLDAHLKGVNCVDYFTGGDKPYLITGSDDHTAK 212
Query: 292 IWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMVGDQSGIIHIWDLKTDQNEQLI 462
+WD + ++ Q + V+AV HP+ I+ G + G + IW T + E +
Sbjct: 213 VWDYQT--KSCVQTLEGHTHNVSAVSFHPELPIIITGSEDGTVRIWHATTYRLENTL 267
Score = 33.9 bits (74), Expect = 0.067
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAG 145
L+TG DHT K+W + C++T++ V+++ P + G
Sbjct: 202 LITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVSFHPELPIIITG 247
Score = 30.3 bits (65), Expect = 0.82
Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = +1
Query: 193 VTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAP-VNAVM 369
V +F+ V F W+ G +D R+++ + K+F+ A + V
Sbjct: 50 VKSFDVTELPVRSAKFIARKQWVVAGADDMFIRVYNYNTMDKI---KVFEAHADYIRCVA 106
Query: 370 LHPDQSQIMVGDQSGIIHIWD 432
+HP ++ +I +WD
Sbjct: 107 VHPTLPYVLSSSDDMLIKLWD 127
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 50.0 bits (114), Expect = 9e-07
Identities = 31/130 (23%), Positives = 60/130 (46%), Gaps = 1/130 (0%)
Frame = +1
Query: 133 SSSWISALRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAA 312
S S + L+++D+ + T++ S+ +S + F +G W+ +GG D ++WD A
Sbjct: 117 SGSSDANLKIWDIRKKGC--IQTYKGHSRGISTIRFTPDGRWVVSGGLDNVVKVWDLTAG 174
Query: 313 PRTRCQKIFQVQAPVNAVMLHPDQSQIMVGDQSGIIHIWDLKT-DQNEQLIPEAEASIQD 489
K + P+ ++ HP + + G + WDL+T + PEA ++
Sbjct: 175 KLLHEFKFH--EGPIRSLDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEA-TGVRS 231
Query: 490 IAIDPAGKMM 519
I P G+ +
Sbjct: 232 IKFHPDGRTL 241
Score = 34.3 bits (75), Expect = 0.050
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAG 145
+V+GG D+ +K+W +G L + + + SL+ P + A G
Sbjct: 157 VVSGGLDNVVKVWDLTAGKLLHEFKFHEGPIRSLDFHPLEFLLATG 202
Score = 32.7 bits (71), Expect = 0.15
Identities = 20/103 (19%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
Frame = +1
Query: 214 SKNVSRVGFQKNGTWMY-TGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQ 390
S NV+ + K + ++ TGG+D +W T + + V++V +
Sbjct: 15 SANVNCLSIGKKTSRLFITGGDDYKVNLW--AIGKPTSLMSLCGHTSAVDSVAFDSAEVL 72
Query: 391 IMVGDQSGIIHIWDLKTDQNEQLIPEAEASIQDIAIDPAGKMM 519
++ G SG+I +WD++ + + ++ + P G+ +
Sbjct: 73 VLAGASSGVIKLWDVEEAKMVRAFTGHRSNCSAVEFHPFGEFL 115
Score = 28.3 bits (60), Expect = 3.3
Identities = 21/97 (21%), Positives = 32/97 (32%)
Frame = +1
Query: 223 VSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMVG 402
V V F + G ++WD A R ++ +AV HP + G
Sbjct: 61 VDSVAFDSAEVLVLAGASSGVIKLWDVEEAKMVRA--FTGHRSNCSAVEFHPFGEFLASG 118
Query: 403 DQSGIIHIWDLKTDQNEQLIPEAEASIQDIAIDPAGK 513
+ IWD++ Q I I P G+
Sbjct: 119 SSDANLKIWDIRKKGCIQTYKGHSRGISTIRFTPDGR 155
>At2g43770.1 68415.m05441 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to U5 snRNP-specific 40 kDa protein (GI:3820594)
[Homo sapiens]
Length = 343
Score = 49.2 bits (112), Expect = 2e-06
Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 6/123 (4%)
Frame = +1
Query: 154 LRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRA-APRTRCQ 330
++++DL + T E ++ + +G+++ T G D +WD R AP+ RC
Sbjct: 204 VKVWDLRKG--EATMTLEGHQDTITGMSLSPDGSYLLTNGMDNKLCVWDMRPYAPQNRCV 261
Query: 331 KIFQ-----VQAPVNAVMLHPDQSQIMVGDQSGIIHIWDLKTDQNEQLIPEAEASIQDIA 495
KIF+ + + PD +++ G ++HIWD + + +P S+ +
Sbjct: 262 KIFEGHQHNFEKNLLKCSWSPDGTKVTAGSSDRMVHIWDTTSRRTIYKLPGHTGSVNECV 321
Query: 496 IDP 504
P
Sbjct: 322 FHP 324
Score = 37.5 bits (83), Expect = 0.005
Identities = 20/82 (24%), Positives = 36/82 (43%)
Frame = +1
Query: 193 VTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVML 372
+ TF D ++ V F ++TGG D ++WD R T + Q + + L
Sbjct: 174 IQTFPD-KYQITAVSFSDAADKIFTGGVDNDVKVWDLRKGEAT--MTLEGHQDTITGMSL 230
Query: 373 HPDQSQIMVGDQSGIIHIWDLK 438
PD S ++ + +WD++
Sbjct: 231 SPDGSYLLTNGMDNKLCVWDMR 252
Score = 34.3 bits (75), Expect = 0.050
Identities = 20/85 (23%), Positives = 38/85 (44%)
Frame = +1
Query: 265 TGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMVGDQSGIIHIWDLKTD 444
+G +D TA++WD R R Q F + + AV +I G + +WDL+
Sbjct: 156 SGSDDGTAKLWDMRQ--RGAIQT-FPDKYQITAVSFSDAADKIFTGGVDNDVKVWDLRKG 212
Query: 445 QNEQLIPEAEASIQDIAIDPAGKMM 519
+ + + +I +++ P G +
Sbjct: 213 EATMTLEGHQDTITGMSLSPDGSYL 237
Score = 30.7 bits (66), Expect = 0.62
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISP 121
+ TGG D+ +K+W G T++ + + +SP
Sbjct: 195 IFTGGVDNDVKVWDLRKGEATMTLEGHQDTITGMSLSP 232
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 49.2 bits (112), Expect = 2e-06
Identities = 29/129 (22%), Positives = 58/129 (44%)
Frame = +1
Query: 133 SSSWISALRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAA 312
S S + LR++D + + T++ ++ +S + F +G W+ +GG D ++WD A
Sbjct: 66 SGSSDTNLRVWD--TRKKGCIQTYKGHTRGISTIEFSPDGRWVVSGGLDNVVKVWDLTAG 123
Query: 313 PRTRCQKIFQVQAPVNAVMLHPDQSQIMVGDQSGIIHIWDLKTDQNEQLIPEAEASIQDI 492
K + P+ ++ HP + + G + WDL+T + ++ I
Sbjct: 124 KLLHEFKCH--EGPIRSLDFHPLEFLLATGSADRTVKFWDLETFELIGTTRPEATGVRAI 181
Query: 493 AIDPAGKMM 519
A P G+ +
Sbjct: 182 AFHPDGQTL 190
Score = 33.5 bits (73), Expect = 0.088
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAG 145
+V+GG D+ +K+W +G L + + + SL+ P + A G
Sbjct: 106 VVSGGLDNVVKVWDLTAGKLLHEFKCHEGPIRSLDFHPLEFLLATG 151
Score = 32.7 bits (71), Expect = 0.15
Identities = 12/57 (21%), Positives = 30/57 (52%)
Frame = +1
Query: 349 APVNAVMLHPDQSQIMVGDQSGIIHIWDLKTDQNEQLIPEAEASIQDIAIDPAGKMM 519
+PV++V + ++ ++ G SG+I +WDL+ + + ++ + P G+ +
Sbjct: 8 SPVDSVAFNSEEVLVLAGASSGVIKLWDLEESKMVRAFTGHRSNCSAVEFHPFGEFL 64
Score = 27.5 bits (58), Expect = 5.8
Identities = 10/46 (21%), Positives = 22/46 (47%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAG 145
L +G D +++W C++T + ++++E SP +G
Sbjct: 64 LASGSSDTNLRVWDTRKKGCIQTYKGHTRGISTIEFSPDGRWVVSG 109
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 48.4 bits (110), Expect = 3e-06
Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 1/126 (0%)
Frame = +1
Query: 130 GSSSWISALRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRA 309
G++S+ RL+D+++ + E S++V + FQ++G + G D AR+WD R
Sbjct: 355 GTTSYDKTWRLWDINTGAE--LLLQEGHSRSVYGIAFQQDGALAASCGLDSLARVWDLRT 412
Query: 310 APRTRCQKIFQVQA-PVNAVMLHPDQSQIMVGDQSGIIHIWDLKTDQNEQLIPEAEASIQ 486
R +FQ PV +V P+ + G + IWDL+ ++ +IP +
Sbjct: 413 G---RSILVFQGHIKPVFSVNFSPNGYHLASGGEDNQCRIWDLRMRKSLYIIPAHANLVS 469
Query: 487 DIAIDP 504
+ +P
Sbjct: 470 QVKYEP 475
Score = 33.5 bits (73), Expect = 0.088
Identities = 25/109 (22%), Positives = 43/109 (39%)
Frame = +1
Query: 124 IDGSSSWISALRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDP 303
+D + SA R L + + TFE ++RV F +G ++ T D T R+WD
Sbjct: 309 VDDCLATASADRTAKLWKTDGTLLQTFEGHLDRLARVAFHPSGKYLGTTSYDKTWRLWDI 368
Query: 304 RAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMVGDQSGIIHIWDLKTDQN 450
Q+ V + D + + +WDL+T ++
Sbjct: 369 NTGAELLLQE--GHSRSVYGIAFQQDGALAASCGLDSLARVWDLRTGRS 415
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAA 139
L T YD + +W ++++ +S+V SL+I+ S A
Sbjct: 481 LATASYDMKVNIWSGRDFSLVKSLAGHESKVASLDITADSSCIA 524
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 47.2 bits (107), Expect = 7e-06
Identities = 29/127 (22%), Positives = 60/127 (47%)
Frame = +1
Query: 133 SSSWISALRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAA 312
S S + L+++D+ + T++ ++ V+ + F +G W+ +GGED ++WD A
Sbjct: 118 SGSLDTNLKIWDIRKKGC--IHTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWDLTAG 175
Query: 313 PRTRCQKIFQVQAPVNAVMLHPDQSQIMVGDQSGIIHIWDLKTDQNEQLIPEAEASIQDI 492
K + Q + ++ HP + + G + WDL+T + A ++ +
Sbjct: 176 KLLTEFKSHEGQ--IQSLDFHPHEFLLATGSADRTVKFWDLETFELIGSGGPETAGVRCL 233
Query: 493 AIDPAGK 513
+ +P GK
Sbjct: 234 SFNPDGK 240
Score = 35.1 bits (77), Expect = 0.029
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAG 145
+V+GG D+ +K+W +G L + + Q+ SL+ P + A G
Sbjct: 158 VVSGGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLDFHPHEFLLATG 203
Score = 31.9 bits (69), Expect = 0.27
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAG 145
LVTGG DH + LW + ++ S ++S+ + ++ AAG
Sbjct: 32 LVTGGEDHKVNLWAIGKPNAILSLYGHSSGIDSVTFDASEVLVAAG 77
Score = 30.7 bits (66), Expect = 0.62
Identities = 17/73 (23%), Positives = 33/73 (45%)
Frame = +1
Query: 220 NVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMV 399
N ++G +K+ + TGGED +W ++ + +++V + +
Sbjct: 20 NCLKIG-RKSSRVLVTGGEDHKVNLW--AIGKPNAILSLYGHSSGIDSVTFDASEVLVAA 76
Query: 400 GDQSGIIHIWDLK 438
G SG I +WDL+
Sbjct: 77 GAASGTIKLWDLE 89
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 47.2 bits (107), Expect = 7e-06
Identities = 29/127 (22%), Positives = 60/127 (47%)
Frame = +1
Query: 133 SSSWISALRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAA 312
S S + L+++D+ + T++ ++ V+ + F +G W+ +GGED ++WD A
Sbjct: 118 SGSLDTNLKIWDIRKKGC--IHTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWDLTAG 175
Query: 313 PRTRCQKIFQVQAPVNAVMLHPDQSQIMVGDQSGIIHIWDLKTDQNEQLIPEAEASIQDI 492
K + Q + ++ HP + + G + WDL+T + A ++ +
Sbjct: 176 KLLTEFKSHEGQ--IQSLDFHPHEFLLATGSADRTVKFWDLETFELIGSGGPETAGVRCL 233
Query: 493 AIDPAGK 513
+ +P GK
Sbjct: 234 SFNPDGK 240
Score = 35.1 bits (77), Expect = 0.029
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAG 145
+V+GG D+ +K+W +G L + + Q+ SL+ P + A G
Sbjct: 158 VVSGGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLDFHPHEFLLATG 203
Score = 31.9 bits (69), Expect = 0.27
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAG 145
LVTGG DH + LW + ++ S ++S+ + ++ AAG
Sbjct: 32 LVTGGEDHKVNLWAIGKPNAILSLYGHSSGIDSVTFDASEVLVAAG 77
Score = 30.7 bits (66), Expect = 0.62
Identities = 17/73 (23%), Positives = 33/73 (45%)
Frame = +1
Query: 220 NVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMV 399
N ++G +K+ + TGGED +W ++ + +++V + +
Sbjct: 20 NCLKIG-RKSSRVLVTGGEDHKVNLW--AIGKPNAILSLYGHSSGIDSVTFDASEVLVAA 76
Query: 400 GDQSGIIHIWDLK 438
G SG I +WDL+
Sbjct: 77 GAASGTIKLWDLE 89
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 47.2 bits (107), Expect = 7e-06
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Frame = +1
Query: 247 NGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMVGDQSGIIHI 426
N W +G D TAR+WD RAA R + + VN V PD + G G +
Sbjct: 216 NPNWFISGSCDSTARLWDTRAASRA-VRTFHGHEGDVNTVKFFPDGYRFGTGSDDGTCRL 274
Query: 427 WDLKTDQNEQLI-PEAEAS---IQDIAIDPAGKMM 519
+D++T Q+ P + + IA +G+++
Sbjct: 275 YDIRTGHQLQVYQPHGDGENGPVTSIAFSVSGRLL 309
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 47.2 bits (107), Expect = 7e-06
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Frame = +1
Query: 247 NGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMVGDQSGIIHI 426
N W +G D TAR+WD RAA R + + VN V PD + G G +
Sbjct: 154 NPNWFISGSCDSTARLWDTRAASRA-VRTFHGHEGDVNTVKFFPDGYRFGTGSDDGTCRL 212
Query: 427 WDLKTDQNEQLI-PEAEAS---IQDIAIDPAGKMM 519
+D++T Q+ P + + IA +G+++
Sbjct: 213 YDIRTGHQLQVYQPHGDGENGPVTSIAFSVSGRLL 247
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 47.2 bits (107), Expect = 7e-06
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Frame = +1
Query: 247 NGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMVGDQSGIIHI 426
N W +G D TAR+WD RAA R + + VN V PD + G G +
Sbjct: 216 NPNWFISGSCDSTARLWDTRAASRA-VRTFHGHEGDVNTVKFFPDGYRFGTGSDDGTCRL 274
Query: 427 WDLKTDQNEQLI-PEAEAS---IQDIAIDPAGKMM 519
+D++T Q+ P + + IA +G+++
Sbjct: 275 YDIRTGHQLQVYQPHGDGENGPVTSIAFSVSGRLL 309
>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
family protein similar to C. elegans putative WD-repeat
protein C14B1.4 (SP:Q17963)
Length = 333
Score = 46.8 bits (106), Expect = 9e-06
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Frame = +1
Query: 172 SSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQA 351
S+ N + +E S +S + + + + + +DCT RIWD R+ C K+ +
Sbjct: 71 SATNYSLIHRYEGHSSGISDLAWSSDSHYTCSASDDCTLRIWDARSP--YECLKVLRGHT 128
Query: 352 P-VNAVMLHPDQSQIMVGDQSGIIHIWDLKTDQNEQLIPEAEASIQDIAIDPAGKMM 519
V V +P + I+ G I IW++KT + ++I I + + G ++
Sbjct: 129 NFVFCVNFNPPSNLIVSGSFDETIRIWEVKTGKCVRMIKAHSMPISSVHFNRDGSLI 185
Score = 33.1 bits (72), Expect = 0.12
Identities = 10/37 (27%), Positives = 24/37 (64%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEIS 118
+V+G +D TI++W+ +G C+R ++ ++S+ +
Sbjct: 143 IVSGSFDETIRIWEVKTGKCVRMIKAHSMPISSVHFN 179
Score = 29.1 bits (62), Expect = 1.9
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTM 79
+V+ +D + K+W A G CL+T+
Sbjct: 185 IVSASHDGSCKIWDAKEGTCLKTL 208
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 44.8 bits (101), Expect = 4e-05
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = +1
Query: 187 DPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIF-QVQAPVNA 363
D + ++ ++S V + N ++ TG D T R+WD + C +IF ++ V +
Sbjct: 490 DRIQPLRIMAGHLSDVDWHPNCNYIATGSSDKTVRLWDVQTG---ECVRIFIGHRSMVLS 546
Query: 364 VMLHPDQSQIMVGDQSGIIHIWDLKT 441
+ + PD + GD+ G I +WDL T
Sbjct: 547 LAMSPDGRYMASGDEDGTIMMWDLST 572
Score = 37.1 bits (82), Expect = 0.007
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAG 145
+ TG D T++LW +G C+R S V SL +SP A+G
Sbjct: 514 IATGSSDKTVRLWDVQTGECVRIFIGHRSMVLSLAMSPDGRYMASG 559
Score = 36.7 bits (81), Expect = 0.009
Identities = 22/94 (23%), Positives = 42/94 (44%)
Frame = +1
Query: 238 FQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMVGDQSGI 417
F G + + D TARIW R Q + + ++ V HP+ + I G
Sbjct: 468 FSPFGHYFASCSHDRTARIWS-----MDRIQPLRIMAGHLSDVDWHPNCNYIATGSSDKT 522
Query: 418 IHIWDLKTDQNEQLIPEAEASIQDIAIDPAGKMM 519
+ +WD++T + ++ + + +A+ P G+ M
Sbjct: 523 VRLWDVQTGECVRIFIGHRSMVLSLAMSPDGRYM 556
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +1
Query: 154 LRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWD 300
+ ++DLS+A +T + V + + G+ + +G DCT ++WD
Sbjct: 565 IMMWDLSTARC--ITPLMGHNSCVWSLSYSGEGSLLASGSADCTVKLWD 611
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 44.8 bits (101), Expect = 4e-05
Identities = 23/103 (22%), Positives = 49/103 (47%)
Frame = +1
Query: 133 SSSWISALRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAA 312
S S + L+++D+ + T++ ++ V+ + F +G W+ +GGED ++WD A
Sbjct: 211 SGSLDTNLKIWDIRKKGC--IHTYKGHTRGVNVLRFTPDGRWIVSGGEDNVVKVWDLTAG 268
Query: 313 PRTRCQKIFQVQAPVNAVMLHPDQSQIMVGDQSGIIHIWDLKT 441
+ + + ++ HP + + G + WDL+T
Sbjct: 269 --KLLHEFKSHEGKIQSLDFHPHEFLLATGSADKTVKFWDLET 309
Score = 34.7 bits (76), Expect = 0.038
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAG 145
+V+GG D+ +K+W +G L + + ++ SL+ P + A G
Sbjct: 251 IVSGGEDNVVKVWDLTAGKLLHEFKSHEGKIQSLDFHPHEFLLATG 296
Score = 31.9 bits (69), Expect = 0.27
Identities = 19/98 (19%), Positives = 42/98 (42%)
Frame = +1
Query: 220 NVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMV 399
N ++G +K+ + TGGED +W ++ + +++V + +
Sbjct: 113 NCLKIG-RKSSRVLVTGGEDHKVNLW--AIGKPNAILSLYGHSSGIDSVTFDASEGLVAA 169
Query: 400 GDQSGIIHIWDLKTDQNEQLIPEAEASIQDIAIDPAGK 513
G SG I +WDL+ + + + ++ + P G+
Sbjct: 170 GAASGTIKLWDLEEAKVVRTLTGHRSNCVSVNFHPFGE 207
Score = 30.3 bits (65), Expect = 0.82
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAG 145
LVTGG DH + LW + ++ S ++S+ + + AAG
Sbjct: 125 LVTGGEDHKVNLWAIGKPNAILSLYGHSSGIDSVTFDASEGLVAAG 170
>At3g49660.1 68416.m05427 transducin family protein / WD-40 repeat
family protein beta-transducin, Schizosaccharomyces
pombe, EMBL:CAA17803
Length = 317
Score = 42.3 bits (95), Expect = 2e-04
Identities = 29/130 (22%), Positives = 59/130 (45%), Gaps = 1/130 (0%)
Frame = +1
Query: 133 SSSWISALRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAA 312
SSS+ R++D S T +D + VS V F NG ++ G D T R+W+ +A
Sbjct: 172 SSSYDGLCRIWD-SGTGHCVKTLIDDENPPVSFVRFSPNGKFILVGTLDNTLRLWNISSA 230
Query: 313 PRTRCQK-IFQVQAPVNAVMLHPDQSQIMVGDQSGIIHIWDLKTDQNEQLIPEAEASIQD 489
+ Q +++ + +I+ G + +H+W+L + + Q + ++ +
Sbjct: 231 KFLKTYTGHVNAQYCISSAFSVTNGKRIVSGSEDNCVHMWELNSKKLLQKLEGHTETVMN 290
Query: 490 IAIDPAGKMM 519
+A P ++
Sbjct: 291 VACHPTENLI 300
Score = 39.1 bits (87), Expect = 0.002
Identities = 25/132 (18%), Positives = 56/132 (42%), Gaps = 3/132 (2%)
Frame = +1
Query: 133 SSSWISALRLYDLSSANP---DPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDP 303
S+S +R Y +++ N +PV F +S V F + ++ + +D T ++WD
Sbjct: 41 SASADKTIRTYTINTINDPIAEPVQEFTGHENGISDVAFSSDARFIVSASDDKTLKLWDV 100
Query: 304 RAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMVGDQSGIIHIWDLKTDQNEQLIPEAEASI 483
+ + + V +P + I+ G + IWD+ T + +++P +
Sbjct: 101 ETG--SLIKTLIGHTNYAFCVNFNPQSNMIVSGSFDETVRIWDVTTGKCLKVLPAHSDPV 158
Query: 484 QDIAIDPAGKMM 519
+ + G ++
Sbjct: 159 TAVDFNRDGSLI 170
Score = 31.5 bits (68), Expect = 0.36
Identities = 9/37 (24%), Positives = 22/37 (59%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEIS 118
+V+G +D T+++W +G CL+ + V +++ +
Sbjct: 128 IVSGSFDETVRIWDVTTGKCLKVLPAHSDPVTAVDFN 164
Score = 31.1 bits (67), Expect = 0.47
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 1/100 (1%)
Frame = +1
Query: 148 SALRLYDLSSAN-PDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTR 324
+ LRL+++SSA T + +S NG + +G ED +W+ + +
Sbjct: 220 NTLRLWNISSAKFLKTYTGHVNAQYCISSAFSVTNGKRIVSGSEDNCVHMWELNS--KKL 277
Query: 325 CQKIFQVQAPVNAVMLHPDQSQIMVGDQSGIIHIWDLKTD 444
QK+ V V HP ++ I G + IW K +
Sbjct: 278 LQKLEGHTETVMNVACHPTENLIASGSLDKTVRIWTQKKE 317
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/46 (23%), Positives = 25/46 (54%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAG 145
+V+G D+ + +W+ +S L+ ++ V ++ PT + A+G
Sbjct: 258 IVSGSEDNCVHMWELNSKKLLQKLEGHTETVMNVACHPTENLIASG 303
>At2g19430.1 68415.m02267 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 5
(SP:Q9UGP9) [Homo sapiens]; contains 7 Trp-Asp WD-40
repeats
Length = 367
Score = 40.7 bits (91), Expect = 6e-04
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Frame = +1
Query: 199 TFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQ-----APVNA 363
TF+ S + V + + + + TG ED TARIWD + +C K+ Q V++
Sbjct: 196 TFKGHSDYLHTVVSRSSASQILTGSEDGTARIWDCKTG---KCVKVIGSQDKKSRLRVSS 252
Query: 364 VMLHPDQSQIMVGDQSGIIHIWDLKTDQNEQLIPEAEASIQDIAID 501
+ L +S ++ G Q + +W+L + Q IP A +QD+ D
Sbjct: 253 MALDGSESWLVCG-QGKNLALWNLPASECVQTIP-IPAHVQDVMFD 296
>At5g60940.2 68418.m07645 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cleavage stimulation factor 50K chain Homo
sapiens, PIR:A45142
Length = 337
Score = 40.3 bits (90), Expect = 8e-04
Identities = 20/85 (23%), Positives = 39/85 (45%)
Frame = +1
Query: 193 VTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVML 372
+ TF D ++ ++ + F T + + +D + +D R K+FQ V ++
Sbjct: 77 IRTFYDHAEPINDLDFHPRSTILISSAKDNCIKFFDFSKTTAKRAFKVFQDTHNVRSISF 136
Query: 373 HPDQSQIMVGDQSGIIHIWDLKTDQ 447
HP ++ G I H++D+ T Q
Sbjct: 137 HPSGEFLLAGTDHPIPHLYDVNTYQ 161
>At5g60940.1 68418.m07644 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cleavage stimulation factor 50K chain Homo
sapiens, PIR:A45142
Length = 429
Score = 40.3 bits (90), Expect = 8e-04
Identities = 20/85 (23%), Positives = 39/85 (45%)
Frame = +1
Query: 193 VTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVML 372
+ TF D ++ ++ + F T + + +D + +D R K+FQ V ++
Sbjct: 169 IRTFYDHAEPINDLDFHPRSTILISSAKDNCIKFFDFSKTTAKRAFKVFQDTHNVRSISF 228
Query: 373 HPDQSQIMVGDQSGIIHIWDLKTDQ 447
HP ++ G I H++D+ T Q
Sbjct: 229 HPSGEFLLAGTDHPIPHLYDVNTYQ 253
>At5g43920.1 68418.m05372 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 523
Score = 40.3 bits (90), Expect = 8e-04
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +1
Query: 232 VGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQV-QAPVNAVMLHPDQSQIMVGDQ 408
V F +G ++ T DCTA IW + + + Q PV+ V PD ++++
Sbjct: 230 VQFSNSGKYLATASSDCTAIIWKVLDDNKVELKHTLESHQNPVSFVSWSPDDTKLLTCGN 289
Query: 409 SGIIHIWDLKT 441
+ ++ +WD+ T
Sbjct: 290 AEVLKLWDVDT 300
>At5g15550.2 68418.m01821 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 402
Score = 40.3 bits (90), Expect = 8e-04
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
Frame = +1
Query: 133 SSSWISALRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAA 312
SSSW ++R +D+ + D + F + N VG + + + GG D R+WDPR
Sbjct: 288 SSSWDHSVRRWDVETGK-DSLNLFCGKALNTVDVGGESSAL-IAAGGSDPILRVWDPR-K 344
Query: 313 PRTRCQKIFQVQAP---VNAVMLHPDQ-SQIMVGDQSGIIHIWDLKT 441
P T +FQ + ++A H ++ G I +WDL+T
Sbjct: 345 PGTSA-PVFQFSSHSSWISACKWHKSSWFHLLSASYDGKIMLWDLRT 390
>At5g15550.1 68418.m01820 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 433
Score = 40.3 bits (90), Expect = 8e-04
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
Frame = +1
Query: 133 SSSWISALRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAA 312
SSSW ++R +D+ + D + F + N VG + + + GG D R+WDPR
Sbjct: 288 SSSWDHSVRRWDVETGK-DSLNLFCGKALNTVDVGGESSAL-IAAGGSDPILRVWDPR-K 344
Query: 313 PRTRCQKIFQVQAP---VNAVMLHPDQ-SQIMVGDQSGIIHIWDLKT 441
P T +FQ + ++A H ++ G I +WDL+T
Sbjct: 345 PGTSA-PVFQFSSHSSWISACKWHKSSWFHLLSASYDGKIMLWDLRT 390
>At2g05720.1 68415.m00613 transducin family protein / WD-40 repeat
family protein Similar to U4/U6 small nuclear
ribonucleoprotein hPrp4 (gi:2708305)[Homo sapiens];
contains 4 WD-40 repeats
Length = 276
Score = 40.3 bits (90), Expect = 8e-04
Identities = 24/64 (37%), Positives = 32/64 (50%)
Frame = +1
Query: 115 LTNIDGSSSWISALRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARI 294
L SS + S R++DL +A + F+ K V V F NG + +GGED RI
Sbjct: 141 LQTFKASSGFDSLARVWDLRTARN--ILIFQGHIKQVLSVDFSPNGYHLASGGEDNQCRI 198
Query: 295 WDPR 306
WD R
Sbjct: 199 WDLR 202
Score = 32.3 bits (70), Expect = 0.20
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +1
Query: 253 TWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQ-APVNAVMLHPDQSQIMVGDQSGIIHIW 429
T+ + G D AR+WD R A R IFQ V +V P+ + G + IW
Sbjct: 143 TFKASSGFDSLARVWDLRTA---RNILIFQGHIKQVLSVDFSPNGYHLASGGEDNQCRIW 199
Query: 430 DLKTDQNEQLIPEAEASIQDIAIDP 504
DL+ + +IP + + +P
Sbjct: 200 DLRMRKLLYIIPAHVNLVSQVKYEP 224
>At4g21520.1 68417.m03110 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to guanine nucleotide-binding protein beta 5
(GI:1001939) [Mesocricetus auratus]
Length = 425
Score = 39.5 bits (88), Expect = 0.001
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Frame = +1
Query: 223 VSRVGFQKNGTWMYTGG-EDCTARIWDPRAAPRTRCQKIFQVQAPVNAVM---LHPDQSQ 390
V+ V F K+G ++YTGG +D WD R + K+++ N + + P
Sbjct: 258 VTHVQFSKDGNYLYTGGRKDPYILCWDIRKSVEI-VYKLYRATENTNQRVFFDIEPCGRH 316
Query: 391 IMVGDQSGIIHIWDLKT 441
+ G Q G++H++DL+T
Sbjct: 317 LGTGGQDGLVHMYDLQT 333
>At1g03110.1 68414.m00288 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to WD-repeat domain 4 protein (GI:9955698) [Mus
musculus]
Length = 427
Score = 37.9 bits (84), Expect = 0.004
Identities = 26/115 (22%), Positives = 53/115 (46%), Gaps = 3/115 (2%)
Frame = +1
Query: 148 SALRLYDLSSANPDPVTTFED--ISK-NVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPR 318
S LR++DL P + D I K ++ + + +G + G+D +IW +A
Sbjct: 38 SDLRIFDLIENCPVSLVDESDGPIRKESIRAIRYSTSGKLFVSAGDDKLVKIW---SADS 94
Query: 319 TRCQKIFQVQAPVNAVMLHPDQSQIMVGDQSGIIHIWDLKTDQNEQLIPEAEASI 483
RC + V+AV + D S + D+ G++ + +L + + +P + ++
Sbjct: 95 WRCLNTVCSEKRVSAVAISSDDSHVCYADKFGVVWVIELDGINDGKTLPSKKGAL 149
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 37.1 bits (82), Expect = 0.007
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQHYG 160
+ TG D TIK+W+ G +R ++ +NSL +S ++ F H G
Sbjct: 255 IYTGSQDCTIKMWETTQGKLIRELKGHGHWINSLALSTEYVLRTGAFDHTG 305
Score = 33.9 bits (74), Expect = 0.067
Identities = 21/98 (21%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Frame = +1
Query: 223 VSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQ-APVNAVMLHPDQSQIMV 399
V+ V F +G W+ + D + R+W+ + +F+ PV V D ++
Sbjct: 363 VNHVYFSPDGKWIASASFDKSVRLWNGITG---QFVTVFRGHVGPVYQVSWSADSRLLLS 419
Query: 400 GDQSGIIHIWDLKTDQNEQLIPEAEASIQDIAIDPAGK 513
G + + IW+++T + +Q +P + + P G+
Sbjct: 420 GSKDSTLKIWEIRTKKLKQDLPGHADEVFAVDWSPDGE 457
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Frame = +1
Query: 304 RAAPRTRCQKIFQVQAP-VNAVMLHPDQSQIMVGDQSGIIHIWDLKTD 444
R P RC + A V V PD Q+ G + +WDL T+
Sbjct: 94 RIRPVNRCSQTIAGHAEAVLCVSFSPDGKQLASGSGDTTVRLWDLYTE 141
>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 1187
Score = 37.1 bits (82), Expect = 0.007
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +1
Query: 259 MYTGGEDCTARIWDPRAAPRTRCQKIFQVQA-PVNAVMLHPDQSQIMVGDQSGIIHIWD 432
+ TG +D TAR+W + R C + A PV +V P I+ G G++ W+
Sbjct: 1035 LITGSDDWTARVW---SVSRGSCDAVLACHAGPVQSVEYSPFDKGIITGSADGLLRFWE 1090
Score = 35.5 bits (78), Expect = 0.022
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEI-SPTSMVAAAG 145
++T +D T+K+W + +C+ T+ S + SLE T ++AAAG
Sbjct: 953 VLTAAHDGTVKMWDVRTDMCVATVGRCSSAILSLEYDDSTGILAAAG 999
Score = 32.7 bits (71), Expect = 0.15
Identities = 18/72 (25%), Positives = 32/72 (44%)
Frame = +1
Query: 232 VGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMVGDQS 411
VG +++ + +G DC +IWDP + V A+ D+ +I+ G
Sbjct: 861 VGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTGTVRAI--SSDRGKIVSGSDD 918
Query: 412 GIIHIWDLKTDQ 447
+ +WD +T Q
Sbjct: 919 LSVIVWDKQTTQ 930
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISP 121
L+TG D T ++W G C + V S+E SP
Sbjct: 1035 LITGSDDWTARVWSVSRGSCDAVLACHAGPVQSVEYSP 1072
>At1g24530.1 68414.m03088 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 7 WD-40 repeats (PF00400)
Length = 418
Score = 37.1 bits (82), Expect = 0.007
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
Frame = +1
Query: 133 SSSWISALRLYDLSSAN-PDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIW-DPR 306
S SW L+++ S + + +D V+ + NGT +YTG D R+W P
Sbjct: 210 SVSWDKTLKIWRASDLRCKESIKAHDDA---VNAIAVSTNGT-VYTGSADRRIRVWAKPT 265
Query: 307 AAPR-TRCQKIFQVQAPVNAVMLHPDQSQIMVGDQSGIIHIWDLKTDQN 450
R T + + ++ VNA+ L+ D S + G I +W+ + N
Sbjct: 266 GEKRHTLVATLEKHKSAVNALALNDDGSVLFSGSCDRSILVWEREDTSN 314
Score = 28.7 bits (61), Expect = 2.5
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 23 YDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMV 133
+D T+K+W+A C +++ D VN++ +S V
Sbjct: 213 WDKTLKIWRASDLRCKESIKAHDDAVNAIAVSTNGTV 249
>At4g04940.1 68417.m00718 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats
Length = 910
Score = 36.3 bits (80), Expect = 0.012
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Frame = +1
Query: 154 LRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQK 333
+RLYD+ + V F + ++ + F ++G W+ + D + RIWD A +
Sbjct: 539 IRLYDVVTLKM--VREFRGHTDRITDLCFSEDGKWVISSSMDGSLRIWDVILAKQI---D 593
Query: 334 IFQVQAPVNAVMLHPDQSQIMV--GDQSGIIHIW 429
V P+ A+ L P+ + DQ+G +++W
Sbjct: 594 GVHVDVPITALSLSPNMDVLATAHSDQNG-VYLW 626
Score = 27.1 bits (57), Expect = 7.7
Identities = 9/27 (33%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Frame = +1
Query: 367 MLHPDQ--SQIMVGDQSGIIHIWDLKT 441
++HPD ++++VG Q G + +W++ T
Sbjct: 144 IVHPDTYLNKVLVGSQEGPLQLWNINT 170
>At3g15610.1 68416.m01980 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to serine/threonine kinase receptor associated
protein GB:NP_035629 (SP:Q9Z1Z2) [Mus musculus];
UNR-interacting protein GB:NP_009109 [Homo sapiens]
Length = 341
Score = 36.3 bits (80), Expect = 0.012
Identities = 27/111 (24%), Positives = 42/111 (37%), Gaps = 9/111 (8%)
Frame = +1
Query: 208 DISKNVSRVGFQ-KNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQ 384
D+ N+ + K+G GGED R++D C K PV+ V P
Sbjct: 225 DMPCNIESASLEPKSGNKFVAGGEDMWVRLFDFHTGKEIGCNK--GHHGPVHCVRFAPTG 282
Query: 385 SQIMVGDQSGIIHIW--------DLKTDQNEQLIPEAEASIQDIAIDPAGK 513
G + G I IW ++ + +Q + E I+ I+ GK
Sbjct: 283 ESYASGSEDGTIRIWQTGPVNPEEISESKPKQSVDEVARKIEGFHINKEGK 333
Score = 27.1 bits (57), Expect = 7.7
Identities = 25/112 (22%), Positives = 51/112 (45%), Gaps = 3/112 (2%)
Frame = +1
Query: 187 DPVTTFEDISKNVSRV-GFQKNGTWMYTGGEDCTARIWDPRA--APRTRCQKIFQVQAPV 357
D + +FE K++ R F ++ ++ TGG + R++D AP T K +
Sbjct: 94 DVLHSFEH--KHIVRACAFSQDTKYLITGGFEKILRVFDLNRLDAPPTEIDK--SPGSIR 149
Query: 358 NAVMLHPDQSQIMVGDQSGIIHIWDLKTDQNEQLIPEAEASIQDIAIDPAGK 513
LH DQ+ + G + +WD+++ + Q + E ++ + + G+
Sbjct: 150 TLTWLHGDQTILSSCTDIGGVRLWDVRSGKIVQTL-ETKSPVTSAEVSQDGR 200
>At2g33340.2 68415.m04087 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 537
Score = 36.3 bits (80), Expect = 0.012
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Frame = +1
Query: 163 YDLSSANPDPVTTFEDISKNV--SRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKI 336
YDLSS + + D SKNV + F +G + TG +IWD ++ + K
Sbjct: 336 YDLSSGSC--LAQVSDDSKNVDYTAAAFHPDGLILGTGTSQSVVKIWDVKS--QANVAKF 391
Query: 337 FQVQAPVNAVMLHPDQSQIMVGDQSGIIHIWDLKTDQNEQLIPEAEASIQDIAIDPAGKM 516
V A+ + + + G + +WDL+ +N + A+A+ + DP+G
Sbjct: 392 DGHTGEVTAISFSENGYFLATAAEDG-VRLWDLRKLRNFKSFLSADAN--SVEFDPSGSY 448
Query: 517 M 519
+
Sbjct: 449 L 449
>At2g33340.1 68415.m04086 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 565
Score = 36.3 bits (80), Expect = 0.012
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Frame = +1
Query: 163 YDLSSANPDPVTTFEDISKNV--SRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKI 336
YDLSS + + D SKNV + F +G + TG +IWD ++ + K
Sbjct: 336 YDLSSGSC--LAQVSDDSKNVDYTAAAFHPDGLILGTGTSQSVVKIWDVKS--QANVAKF 391
Query: 337 FQVQAPVNAVMLHPDQSQIMVGDQSGIIHIWDLKTDQNEQLIPEAEASIQDIAIDPAGKM 516
V A+ + + + G + +WDL+ +N + A+A+ + DP+G
Sbjct: 392 DGHTGEVTAISFSENGYFLATAAEDG-VRLWDLRKLRNFKSFLSADAN--SVEFDPSGSY 448
Query: 517 M 519
+
Sbjct: 449 L 449
>At1g73720.1 68414.m08536 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Will die slowly protein
(SP:Q9V3J8)[Drosophila melanogaster]
Length = 511
Score = 36.3 bits (80), Expect = 0.012
Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Frame = +1
Query: 133 SSSWISALRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAA 312
S+S+ R++ L S + F + V+ F +G+ + T DCT ++WD +
Sbjct: 322 STSFDQTARIHGLKSGKL--LKEFRGHTSYVNHAIFTSDGSRIITASSDCTVKVWDSKT- 378
Query: 313 PRTRCQKIFQ-------VQAPVNAVMLHPDQSQ-IMVGDQSGIIHIWDLK 438
T C + F+ A VN++ L P ++ I+V +++ I+I L+
Sbjct: 379 --TDCLQTFKPPPPLRGTDASVNSIHLFPKNTEHIVVCNKTSSIYIMTLQ 426
Score = 32.7 bits (71), Expect = 0.15
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEIS 118
L +G D IK+W+ +GVC+R V SL S
Sbjct: 278 LASGSQDGKIKIWRIRTGVCIRRFDAHSQGVTSLSFS 314
Score = 30.7 bits (66), Expect = 0.62
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHP------DSQVNSLEISP 121
++T D T+K+W + + CL+T + P D+ VNS+ + P
Sbjct: 362 IITASSDCTVKVWDSKTTDCLQTFKPPPPLRGTDASVNSIHLFP 405
>At5g56190.2 68418.m07011 WD-40 repeat family protein contains 3 (2
significant) WD-40 repeats (PF0400); similar to beta
transducin-like protein HET-E2C*40 (GI:17225208)
[Podospora anserina]
Length = 447
Score = 35.9 bits (79), Expect = 0.017
Identities = 21/86 (24%), Positives = 37/86 (43%)
Frame = +1
Query: 247 NGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMVGDQSGIIHI 426
NG TG +D T RIWD R + + A V ++ D + + + + +HI
Sbjct: 330 NGVTFATGNQDKTCRIWDTRKLSESVAVLKGNLGA-VRSIRFTSDGRYVAMAEPADFVHI 388
Query: 427 WDLKTDQNEQLIPEAEASIQDIAIDP 504
+D K+ ++ + I I+ P
Sbjct: 389 YDTKSGYKKEQEIDFFGEISGISFSP 414
>At5g56190.1 68418.m07010 WD-40 repeat family protein contains 3 (2
significant) WD-40 repeats (PF0400); similar to beta
transducin-like protein HET-E2C*40 (GI:17225208)
[Podospora anserina]
Length = 441
Score = 35.9 bits (79), Expect = 0.017
Identities = 21/86 (24%), Positives = 37/86 (43%)
Frame = +1
Query: 247 NGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMVGDQSGIIHI 426
NG TG +D T RIWD R + + A V ++ D + + + + +HI
Sbjct: 324 NGVTFATGNQDKTCRIWDTRKLSESVAVLKGNLGA-VRSIRFTSDGRYVAMAEPADFVHI 382
Query: 427 WDLKTDQNEQLIPEAEASIQDIAIDP 504
+D K+ ++ + I I+ P
Sbjct: 383 YDTKSGYKKEQEIDFFGEISGISFSP 408
>At3g05090.2 68416.m00553 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 35.9 bits (79), Expect = 0.017
Identities = 18/73 (24%), Positives = 33/73 (45%)
Frame = +1
Query: 217 KNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIM 396
++V + GT + +GG + R+WDPR ++ K+ V ++L +
Sbjct: 214 ESVYALAMNDTGTMLVSGGTEKVLRVWDPRTG--SKSMKLRGHTDNVRVLLLDSTGRFCL 271
Query: 397 VGDQSGIIHIWDL 435
G +I +WDL
Sbjct: 272 SGSSDSMIRLWDL 284
>At3g05090.1 68416.m00552 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 35.9 bits (79), Expect = 0.017
Identities = 18/73 (24%), Positives = 33/73 (45%)
Frame = +1
Query: 217 KNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIM 396
++V + GT + +GG + R+WDPR ++ K+ V ++L +
Sbjct: 214 ESVYALAMNDTGTMLVSGGTEKVLRVWDPRTG--SKSMKLRGHTDNVRVLLLDSTGRFCL 271
Query: 397 VGDQSGIIHIWDL 435
G +I +WDL
Sbjct: 272 SGSSDSMIRLWDL 284
>At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1216
Score = 35.9 bits (79), Expect = 0.017
Identities = 23/89 (25%), Positives = 39/89 (43%)
Frame = +1
Query: 154 LRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQK 333
++L+ ++ V T NVS V F + + ED + R+WD A RT Q
Sbjct: 228 VKLWRMNETKAWEVDTLRGHMNNVSSVMFHAKQDIIVSNSEDKSIRVWD--ATKRTGLQT 285
Query: 334 IFQVQAPVNAVMLHPDQSQIMVGDQSGII 420
+ + +HP+ + + G SG+I
Sbjct: 286 FRREHDRFWILAVHPEMNLLAAGHDSGMI 314
>At1g10580.1 68414.m01192 transducin family protein / WD-40 repeat
family protein similar to splicing factor hPRP17
(gi|3283220); contains 7 WD-40 repeats (PF00400);similar
to ESTs emb|F15435 and dbj|AUO62661
Length = 573
Score = 35.9 bits (79), Expect = 0.017
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Frame = +1
Query: 193 VTTFEDISKNVSRVGF-QKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQA-PVNAV 366
V T+ +K VS + F K G + + G DC +IWD +C + + A V +
Sbjct: 275 VHTWSGHTKGVSAIRFFPKQGHLLLSAGMDCKVKIWD--VYNSGKCMRTYMGHAKAVRDI 332
Query: 367 MLHPDQSQIMVGDQSGIIHIWDLKTDQ 447
D S+ + I WD +T Q
Sbjct: 333 CFSNDGSKFLTAGYDKNIKYWDTETGQ 359
>At5g56130.1 68418.m07002 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to beta transducin-like protein HET-E2C*4
(GI:17225206) [Podospora anserina]
Length = 315
Score = 35.5 bits (78), Expect = 0.022
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
Frame = +1
Query: 202 FEDISKNVSRVGFQKNGTWMYTGGEDCTARIW--DPRAAPRTRCQKIFQVQAPVNAVMLH 375
++ K V V + NGT + +G D TARIW +P + + ++ V+ +
Sbjct: 16 YQGHKKKVHSVAWNSNGTKLASGSVDQTARIWNIEPHGHSKAKDLELKGHTDSVDQLCWD 75
Query: 376 PDQSQIMV---GDQSGIIHIWDLKTDQNEQLIPEAEASIQDIAIDPAG 510
P S ++ GD+S + +WD ++ + Q + + +I +I P G
Sbjct: 76 PKHSDLVATASGDKS--VRLWDARSGKCTQQVELSGENI-NITYKPDG 120
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAG 145
+ T D +++LW A SG C + ++ +N + P A G
Sbjct: 82 VATASGDKSVRLWDARSGKCTQQVELSGENIN-ITYKPDGTHVAVG 126
>At5g50230.1 68418.m06221 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to TIPD PROTEIN (SP:O15736)[Dictyostelium
discoideum]
Length = 515
Score = 35.5 bits (78), Expect = 0.022
Identities = 33/146 (22%), Positives = 55/146 (37%), Gaps = 2/146 (1%)
Frame = +1
Query: 52 TQWCLFTNNAASRFASEQLGDLTNIDGSSSWISALRLYDLSSANPDPVTTFEDISKNVSR 231
T LFT+N + S + LT G LRL+D+ + ++ S V+
Sbjct: 351 TNTVLFTSNCNAICLS--IDGLTVFSGHMD--GNLRLWDIQTGKL--LSEVAGHSSAVTS 404
Query: 232 VGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVN--AVMLHPDQSQIMVGD 405
V +NG + T G D ++D R + + N + PD + G
Sbjct: 405 VSLSRNGNRILTSGRDNVHNVFDTRTLEICGTLRASGNRLASNWSRSCISPDDDYVAAGS 464
Query: 406 QSGIIHIWDLKTDQNEQLIPEAEASI 483
G +H+W L ++ E + I
Sbjct: 465 ADGSVHVWSLSKGNIVSILKEQTSPI 490
Score = 34.7 bits (76), Expect = 0.038
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAG 145
+V+ YD TIKLW H G C T+ S N++ +S + +G
Sbjct: 331 VVSAAYDRTIKLWDLHKGYCTNTVLF-TSNCNAICLSIDGLTVFSG 375
Score = 32.3 bits (70), Expect = 0.20
Identities = 13/68 (19%), Positives = 32/68 (47%)
Frame = +1
Query: 238 FQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMVGDQSGI 417
F+ N ++TGG+D ++WD + T + ++ + + + D ++ S
Sbjct: 239 FEYNSGTLFTGGQDRAVKMWDTNSG--TLIKSLYGSLGNILDMAVTHDNKSVIAATSSNN 296
Query: 418 IHIWDLKT 441
+ +WD+ +
Sbjct: 297 LFVWDVSS 304
Score = 29.5 bits (63), Expect = 1.4
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTM 79
L TGG D +K+W +SG ++++
Sbjct: 246 LFTGGQDRAVKMWDTNSGTLIKSL 269
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/78 (19%), Positives = 33/78 (42%)
Frame = +1
Query: 277 DCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMVGDQSGIIHIWDLKTDQNEQ 456
D T ++WD + C + NA+ L D + G G + +WD++T +
Sbjct: 337 DRTIKLWDLH---KGYCTNTVLFTSNCNAICLSIDGLTVFSGHMDGNLRLWDIQTGKLLS 393
Query: 457 LIPEAEASIQDIAIDPAG 510
+ +++ +++ G
Sbjct: 394 EVAGHSSAVTSVSLSRNG 411
>At1g48630.1 68414.m05440 guanine nucleotide-binding family protein
/ activated protein kinase C receptor, putative / RACK,
putative contains 7 WD-40 repeats (PF00400); very
similar to guanine nucleotide-binding protein; activated
protein kinase C receptor; RACK1 (GI:9294068)
{Arabidopsis thaliana}; similar to WD-40 repeat
auxin-dependent protein ARCA (SP:O24456) [Arabidopsis
thaliana];
Length = 326
Score = 35.5 bits (78), Expect = 0.022
Identities = 26/130 (20%), Positives = 52/130 (40%), Gaps = 2/130 (1%)
Frame = +1
Query: 133 SSSWISALRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAA 312
S SW LRL+DL A + F +K+V V F + + + D T ++W+
Sbjct: 80 SGSWDGELRLWDL--ATGESTRRFVGHTKDVLSVAFSTDNRQIVSASRDRTIKLWNTLGE 137
Query: 313 PRTRCQKIFQVQAPVNAVMLHPDQ--SQIMVGDQSGIIHIWDLKTDQNEQLIPEAEASIQ 486
+ + + V+ V P+ I+ + +W+L+ + + +
Sbjct: 138 CKYTISEADGHKEWVSCVRFSPNTLVPTIVSASWDKTVKVWNLQNCKLRNTLAGHSGYLN 197
Query: 487 DIAIDPAGKM 516
+A+ P G +
Sbjct: 198 TVAVSPDGSL 207
Score = 29.9 bits (64), Expect = 1.1
Identities = 11/46 (23%), Positives = 24/46 (52%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAG 145
+V+ +D T+K+W + T+ +N++ +SP + A+G
Sbjct: 166 IVSASWDKTVKVWNLQNCKLRNTLAGHSGYLNTVAVSPDGSLCASG 211
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +1
Query: 355 VNAVMLHPDQSQIMVGDQSGIIHIWDLKTDQNEQLIPEAEASIQDIAIDP 504
+N V + PD S G + G+I +WDL + + EA + I + P
Sbjct: 196 LNTVAVSPDGSLCASGGKDGVILLWDLAEGKKLYSL-EAGSIIHSLCFSP 244
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 35.1 bits (77), Expect = 0.029
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
Frame = +1
Query: 223 VSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMV- 399
V V + +NG W+ T +D +++D R Q V ++ HP + V
Sbjct: 313 VLSVKWNQNGNWLLTASKDQIIKLYDIRT--MKELQSFRGHTKDVTSLAWHPCHEEYFVS 370
Query: 400 GDQSGIIHIWDLKTDQNEQLIPEA-EASIQDIAIDPAGKMM 519
G G I W + + + IP A + S+ D+A P G ++
Sbjct: 371 GSSDGSICHWIVGHENPQIEIPNAHDNSVWDLAWHPIGYLL 411
Score = 27.9 bits (59), Expect = 4.4
Identities = 19/95 (20%), Positives = 44/95 (46%)
Frame = +1
Query: 220 NVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMV 399
+V V + + + +GG+D ++WD R+ R C + + V +V + + + ++
Sbjct: 270 DVKSVDWHPTKSLLVSGGKDQLVKLWDTRSG-RELC-SLHGHKNIVLSVKWNQNGNWLLT 327
Query: 400 GDQSGIIHIWDLKTDQNEQLIPEAEASIQDIAIDP 504
+ II ++D++T + Q + +A P
Sbjct: 328 ASKDQIIKLYDIRTMKELQSFRGHTKDVTSLAWHP 362
Score = 27.1 bits (57), Expect = 7.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSG 61
LV+GG D +KLW SG
Sbjct: 283 LVSGGKDQLVKLWDTRSG 300
>At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2
protein (ZFWD2), putative 99.8% identical to zfwd2
protein (GI:12057166) [Arabidopsis thaliana]; contains 6
copies (2 weak) Pfam PF00400: WD domain, G-beta repeat;
contains Pfam PF00642: Zinc finger C-x8-C-x5-C-x3-H type
(and similar) domain
Length = 437
Score = 34.7 bits (76), Expect = 0.038
Identities = 19/89 (21%), Positives = 43/89 (48%)
Frame = +1
Query: 193 VTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVML 372
+T + K VS + +YTG +D T R+WD + +C + ++ + V+
Sbjct: 144 LTQLDGHEKLVSGIALPSGSDKLYTGSKDETLRVWDCASG---QCTGVLKLGGEIGCVL- 199
Query: 373 HPDQSQIMVGDQSGIIHIWDLKTDQNEQL 459
+ ++VG ++ W+++T+ ++ L
Sbjct: 200 -SEGPWLLVG-MPNLVKAWNIETNADQSL 226
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSL 109
L +G D TIK+W + C++T+ S V SL
Sbjct: 287 LYSGSMDKTIKVWSLDNLQCIQTLTDHSSVVMSL 320
>At5g12920.1 68418.m01482 expressed protein contains 3 weak WD-40
repeats (PF00400); low similarity to MEK kinase alpha
(GI:4028547); transcriptional repressor TUP1
(GI:3406654) [Dictyostelium discoideum]; Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (TGF-beta receptor interacting protein 1)
(TRIP-1) (SP:Q38884) [Arabidopsis thaliana]
Length = 442
Score = 34.7 bits (76), Expect = 0.038
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +1
Query: 292 IWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMVGDQSGIIHIWDLKTDQN 450
+WD RA + + ++ ++ D I + GIIHIWDL+ +N
Sbjct: 177 VWDRRAGVSPCIELSTDRYDSIKSIQIYVDNQTIFGAGKEGIIHIWDLRGGRN 229
>At1g52730.2 68414.m05959 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to UNR-interacting protein (WD-40 repeat protein
PT-WD) (SP:Q9Y3F4) [Homo sapiens]
Length = 343
Score = 34.7 bits (76), Expect = 0.038
Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 4/100 (4%)
Frame = +1
Query: 208 DISKNVSRVGFQ-KNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQ 384
D+ N+ + K+G GGED R++D C K PV+ V P
Sbjct: 225 DMPCNIESASLEPKSGEKFVAGGEDMWVRVFDFYTGEEIGCNK--GHHGPVHCVRFTPTG 282
Query: 385 SQIMVGDQSGIIHIWD---LKTDQNEQLIPEAEASIQDIA 495
G + G I IW ++NE + S+ +++
Sbjct: 283 LSYASGSEDGTIRIWQTTPANPEENETSSRRVKHSVDEVS 322
>At1g52730.1 68414.m05958 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to UNR-interacting protein (WD-40 repeat protein
PT-WD) (SP:Q9Y3F4) [Homo sapiens]
Length = 343
Score = 34.7 bits (76), Expect = 0.038
Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 4/100 (4%)
Frame = +1
Query: 208 DISKNVSRVGFQ-KNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQ 384
D+ N+ + K+G GGED R++D C K PV+ V P
Sbjct: 225 DMPCNIESASLEPKSGEKFVAGGEDMWVRVFDFYTGEEIGCNK--GHHGPVHCVRFTPTG 282
Query: 385 SQIMVGDQSGIIHIWD---LKTDQNEQLIPEAEASIQDIA 495
G + G I IW ++NE + S+ +++
Sbjct: 283 LSYASGSEDGTIRIWQTTPANPEENETSSRRVKHSVDEVS 322
>At1g18080.1 68414.m02238 WD-40 repeat family protein /
auxin-dependent protein (ARCA) / guanine
nucleotide-binding protein beta subunit, putative
identical to SP|O24456 Guanine nucleotide-binding
protein beta subunit-like protein (WD-40 repeat
auxin-dependent protein ARCA) {Arabidopsis thaliana};
contains 7 WD-40 repeats (PF00400)
Length = 327
Score = 34.7 bits (76), Expect = 0.038
Identities = 25/105 (23%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Frame = +1
Query: 133 SSSWISALRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAA 312
S+SW +++++LS+ +T + VS V +G+ +GG+D +WD
Sbjct: 169 SASWDKTVKVWNLSNCKLR--STLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWD---- 222
Query: 313 PRTRCQKIFQVQA--PVNAVMLHPDQSQIMVGDQSGIIHIWDLKT 441
+K++ ++A ++A+ P++ + + G I IWDL++
Sbjct: 223 -LAEGKKLYSLEANSVIHALCFSPNRYWLCAATEHG-IKIWDLES 265
Score = 31.9 bits (69), Expect = 0.27
Identities = 26/131 (19%), Positives = 52/131 (39%), Gaps = 3/131 (2%)
Frame = +1
Query: 133 SSSWISALRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAA 312
S SW LRL+DL++ F +K+V V F + + + D T ++W+
Sbjct: 80 SGSWDGELRLWDLAAG--VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE 137
Query: 313 PRTRCQKIFQVQAP-VNAVMLHPD--QSQIMVGDQSGIIHIWDLKTDQNEQLIPEAEASI 483
+ + + V+ V P+ Q I+ + +W+L + + +
Sbjct: 138 CKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYV 197
Query: 484 QDIAIDPAGKM 516
+A+ P G +
Sbjct: 198 STVAVSPDGSL 208
Score = 27.9 bits (59), Expect = 4.4
Identities = 11/46 (23%), Positives = 24/46 (52%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAG 145
+V+ +D T+K+W + T+ V+++ +SP + A+G
Sbjct: 167 IVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASG 212
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +1
Query: 355 VNAVMLHPDQSQIMVGDQSGIIHIWDLKTDQNEQLIPEAEASIQDIAIDP 504
V+ V + PD S G + G++ +WDL + + EA + I + P
Sbjct: 197 VSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL-EANSVIHALCFSP 245
>At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota,PID:g2253631
Length = 457
Score = 34.3 bits (75), Expect = 0.050
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 17 GGYDHTIKLWQAHSGVCLRTMQHPDSQVNSL 109
GG D TIK W H+G CL ++ SQV SL
Sbjct: 335 GGGDRTIKFWNTHTGACLNSVD-TGSQVCSL 364
>At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota, PID:g2253631
Length = 447
Score = 34.3 bits (75), Expect = 0.050
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 17 GGYDHTIKLWQAHSGVCLRTMQHPDSQVNSL 109
GG D TIK W H+G CL ++ SQV SL
Sbjct: 325 GGGDRTIKFWNTHTGACLNSVD-TGSQVCSL 354
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 34.3 bits (75), Expect = 0.050
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Frame = +1
Query: 154 LRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQK 333
+R D ++ D + T E K V V + + TG D T + WDPR A T +
Sbjct: 80 VRRIDFNAGKEDVLGTHE---KPVRCVEYSYAAGQVITGSWDKTIKCWDPRGASGTERTQ 136
Query: 334 IFQVQAPVNAVMLHPDQSQIMVGDQSGIIHIWDLKT-DQNEQ 456
I P L ++++V ++I+DL+ Q EQ
Sbjct: 137 IGTYMQPERVNSLSLVGNRLVVATAGRHVNIYDLRNMSQPEQ 178
Score = 29.5 bits (63), Expect = 1.4
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 352 PVNAVMLHPDQSQIMVGDQSGIIHIWD 432
PVNA+ HP G G ++IWD
Sbjct: 242 PVNAIAFHPIYGTFASGGCDGFVNIWD 268
Score = 27.9 bits (59), Expect = 4.4
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Frame = +2
Query: 8 LVTGGYDHTIKLW--QAHSG---VCLRTMQHPDSQVNSLEISPTSMVAAAGFQH---YGY 163
++TG +D TIK W + SG + T P+ +VNSL + +V A +H Y
Sbjct: 112 VITGSWDKTIKCWDPRGASGTERTQIGTYMQPE-RVNSLSLVGNRLVVATAGRHVNIYDL 170
Query: 164 MILVVPIQTRSQLLR 208
+ P Q R L+
Sbjct: 171 RNMSQPEQRRESSLK 185
>At5g08560.1 68418.m01018 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 589
Score = 33.9 bits (74), Expect = 0.067
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +1
Query: 238 FQKNGTWMYTGGEDCTARIWDPRAAPRTRCQK-IFQVQAPVNAVMLHPDQSQIMVGDQSG 414
F NG ++ + +D TA IW+ A + + PV A++ PD Q++
Sbjct: 282 FSHNGKYLASSSKDQTAIIWEISADGHISLKHTLVGHHKPVIAILWSPDDRQVLTCGAEE 341
Query: 415 IIHIWDL 435
+I WD+
Sbjct: 342 VIRRWDV 348
>At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic
regulator 1 (PRL1) identical to PP1/PP2A phosphatases
pleiotropic regulator PRL1 (SP:Q42384) [Arabidopsis
thaliana], PRL1 [Arabidopsis thaliana] GI:577733;
contains Pfam PF00400: WD domain, G-beta repeat (7
copies)
Length = 486
Score = 33.5 bits (73), Expect = 0.088
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISP 121
+VTG +D TIK W G + T+ H V ++ + P
Sbjct: 317 VVTGSHDTTIKFWDLRYGKTMSTLTHHKKSVRAMTLHP 354
Score = 33.1 bits (72), Expect = 0.12
Identities = 15/63 (23%), Positives = 29/63 (46%)
Frame = +1
Query: 253 TWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMVGDQSGIIHIWD 432
T+M++ G+D + WD R + V + LHP ++ G + + +WD
Sbjct: 231 TYMFSAGDDKQVKCWDLEQNKVIR--SYHGHLSGVYCLALHPTLDVLLTGGRDSVCRVWD 288
Query: 433 LKT 441
++T
Sbjct: 289 IRT 291
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 14 TGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEIS 118
TG D TIK+W +GV T+ QV L +S
Sbjct: 193 TGSADRTIKIWDVATGVLKLTLTGHIEQVRGLAVS 227
>At3g18130.1 68416.m02305 guanine nucleotide-binding family protein
/ activated protein kinase C receptor (RACK1) identical
to guanine nucleotide-binding protein; activated protein
kinase C receptor; RACK1 (GI:9294068) {Arabidopsis
thaliana}; contains Pfam profile: PF00400 WD domain,
G-beta repeat (7 copies)
Length = 326
Score = 33.5 bits (73), Expect = 0.088
Identities = 26/130 (20%), Positives = 52/130 (40%), Gaps = 2/130 (1%)
Frame = +1
Query: 133 SSSWISALRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAA 312
S SW LRL+DL A + F +K+V V F + + + D T ++W+
Sbjct: 80 SGSWDGELRLWDL--ATGETTRRFVGHTKDVLSVAFSTDNRQIVSASRDRTIKLWNTLGE 137
Query: 313 PRTRCQKIFQVQAPVNAVMLHPDQ--SQIMVGDQSGIIHIWDLKTDQNEQLIPEAEASIQ 486
+ + + V+ V P+ I+ + +W+L+ + + +
Sbjct: 138 CKYTISEGDGHKEWVSCVRFSPNTLVPTIVSASWDKTVKVWNLQNCKLRNSLVGHSGYLN 197
Query: 487 DIAIDPAGKM 516
+A+ P G +
Sbjct: 198 TVAVSPDGSL 207
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +1
Query: 355 VNAVMLHPDQSQIMVGDQSGIIHIWDLKTDQNEQLIPEAEASIQDIAIDP 504
+N V + PD S G + G+I +WDL + + EA + I + P
Sbjct: 196 LNTVAVSPDGSLCASGGKDGVILLWDLAEGKKLYSL-EAGSIIHSLCFSP 244
Score = 27.9 bits (59), Expect = 4.4
Identities = 10/46 (21%), Positives = 24/46 (52%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAG 145
+V+ +D T+K+W + ++ +N++ +SP + A+G
Sbjct: 166 IVSASWDKTVKVWNLQNCKLRNSLVGHSGYLNTVAVSPDGSLCASG 211
>At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic
regulator 2 (PRL2) identical to SP|Q39190 PP1/PP2A
phosphatases pleiotropic regulator PRL2 {Arabidopsis
thaliana}, GB:Q39190 from [Arabidopsis thaliana];
contains Pfam PF00400: WD domain, G-beta repeat (7
copies, 1 weak)
Length = 479
Score = 33.5 bits (73), Expect = 0.088
Identities = 16/71 (22%), Positives = 31/71 (43%)
Frame = +1
Query: 253 TWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMVGDQSGIIHIWD 432
T+M++ G+D + WD R V + LHP ++ G + + +WD
Sbjct: 225 TYMFSAGDDKQVKCWDLEQNKVIR--SYHGHLHGVYCLALHPTLDVVLTGGRDSVCRVWD 282
Query: 433 LKTDQNEQLIP 465
++T ++P
Sbjct: 283 IRTKMQIFVLP 293
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 14 TGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEIS 118
TG D TIK+W +GV T+ QV L +S
Sbjct: 187 TGSADRTIKIWDVATGVLKLTLTGHIGQVRGLAVS 221
Score = 29.9 bits (64), Expect = 1.1
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISP 121
++TG +D TIK W G + T+ + V ++ + P
Sbjct: 310 VITGSHDSTIKFWDLRYGKSMATITNHKKTVRAMALHP 347
>At2g47990.1 68415.m06006 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 5 WD-40 repeats (PF00400); similar to beta
transducin-like protein HET-E2C*4
(GP:17225206)[Podospora anserina]
Length = 530
Score = 33.5 bits (73), Expect = 0.088
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQA--HSGVCLRTMQHPDSQVNSLEISPTSMVAAAG 145
LVTG YDHT+K+W A H+ + + H + + + ++A AG
Sbjct: 194 LVTGSYDHTVKVWDARVHTSNWIAEINHGLPVEDVVYLPSGGLIATAG 241
>At2g46290.1 68415.m05758 eukaryotic translation initiation factor 3
subunit 2, putative / eIF-3 beta, putative / eIF3i,
putative strong similarity to SP|Q38884 Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor interacting
protein 1) (TRIP-1) {Arabidopsis thaliana}; contains
Pfam PF00400: WD domain, G-beta repeat (5
copies)|19799885|gb|AU231175.1|AU231175
Length = 355
Score = 33.5 bits (73), Expect = 0.088
Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 5/109 (4%)
Frame = +1
Query: 130 GSSSWISALRLY-DLSSANPDPVTTFE--DISKNVSRVGFQKNGTWMYTGGEDCTARIWD 300
G+SS I R+ D D V + D K ++R + + +GGED RIWD
Sbjct: 144 GTSSAIHVKRIAEDPEDQVGDSVLVLQSPDGKKKINRAVWGPLNQTIVSGGEDAAIRIWD 203
Query: 301 PRAAP--RTRCQKIFQVQAPVNAVMLHPDQSQIMVGDQSGIIHIWDLKT 441
+ +++ +A + ++ D S + G +WD++T
Sbjct: 204 AETGKLLKQSDEEVGHKEA-ITSLCKAADDSHFLTGSHDKTAKLWDMRT 251
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQHY 157
+V+GG D I++W A +G + ++ D +V E + TS+ AA H+
Sbjct: 190 IVSGGEDAAIRIWDAETG---KLLKQSDEEVGHKE-AITSLCKAADDSHF 235
Score = 27.9 bits (59), Expect = 4.4
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQHY 157
L+TG D T KLW SG L T + + S++ S +A H+
Sbjct: 94 LITGSADQTAKLWDVKSGKELFTFKF-GAPARSVDFSVGDHLAVITTDHF 142
>At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1218
Score = 33.5 bits (73), Expect = 0.088
Identities = 22/89 (24%), Positives = 39/89 (43%)
Frame = +1
Query: 154 LRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQK 333
++L+ ++ V T NVS V F + + ED + R+WD A RT Q
Sbjct: 228 VKLWRMNETKAWEVDTLRGHMNNVSSVMFHAKQDIIVSNSEDKSIRVWD--ATKRTGIQT 285
Query: 334 IFQVQAPVNAVMLHPDQSQIMVGDQSGII 420
+ + +HP+ + + G +G+I
Sbjct: 286 FRREHDRFWILAVHPEINLLAAGHDNGMI 314
>At4g29860.1 68417.m04250 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400); WDVCF
variant 1 (gi:12006981) [Mus musculus]
Length = 386
Score = 33.1 bits (72), Expect = 0.12
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 2/87 (2%)
Frame = +1
Query: 184 PDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNA 363
PDPV +V V F + + ++TG D RIWD V A
Sbjct: 7 PDPVAVLRGHRHSVMDVSFHPSKSLLFTGSADGELRIWDTIQHRAVSSAWAHSRANGVLA 66
Query: 364 VMLHP--DQSQIMVGDQSGIIHIWDLK 438
V P + +I+ + G + WD++
Sbjct: 67 VAASPWLGEDKIISQGRDGTVKCWDIE 93
>At2g26490.1 68415.m03178 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
related to En/Spm transposon family of maize
Length = 465
Score = 32.7 bits (71), Expect = 0.15
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAG 145
L + +D TIK+W+ CL ++ D VNS+ +S T + +G
Sbjct: 221 LYSASWDRTIKVWRIADSKCLESIPAHDDAVNSV-VSTTEAIVFSG 265
>At3g18950.1 68416.m02405 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 473
Score = 32.3 bits (70), Expect = 0.20
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSL 109
L +G +D T+K+W+ CL ++Q D +N++
Sbjct: 264 LYSGSWDKTLKVWRLSDSKCLESIQAHDDAINTV 297
>At1g29260.1 68414.m03578 peroxisomal targeting signal type 2
receptor (PEX7) identical to peroxisomal targeting
signal type 2 receptor (Pex7p) (GI:9502414) [Arabidopsis
thaliana]; WD-40 repeat protein family member; contains
6 WD-40 repeats (PF00400); similar to peroxismal
targeting signal 2 receptor (PTS2R) (Peroxin-7)
(PEX7)(SP:O00628) [Homo sapiens]
Length = 317
Score = 32.3 bits (70), Expect = 0.20
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 133 SSSWISALRLYDLSSANPDPVTTFEDISKNVSRVGFQ-KNGTWMYTGGEDCTARIWDPR 306
+SSW ++L+ + P V TF++ + V + + K+G + DCT RIWD R
Sbjct: 124 TSSWDDTVKLWAMD--RPASVRTFKEHAYCVYQAVWNPKHGDVFASASGDCTLRIWDVR 180
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 31.9 bits (69), Expect = 0.27
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +2
Query: 2 VALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAG 145
+ L + +D T+KLW A G L + V SL SP A+G
Sbjct: 512 LTLASASFDSTVKLWDAELGKMLCSFNGHREPVYSLAFSPNGEYIASG 559
>At4g11270.1 68417.m01823 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
related to TGF-beta resistance-associated protein TRAG
(GI:15624071) {Mus musculus}; similar to
beta-transducin repeats containing protein - Homo
sapiens,PID:e1284220; 3' EST no_NP:TC8031
Length = 1446
Score = 31.9 bits (69), Expect = 0.27
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISP 121
L++G D TI++W SG + M H + V + +SP
Sbjct: 552 LISGSMDCTIRIWDLESGNVIMIMHHHVAPVRQIILSP 589
>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to WDR protein, form B (GI:14970593) [Mus
musculus]
Length = 1589
Score = 31.9 bits (69), Expect = 0.27
Identities = 11/58 (18%), Positives = 28/58 (48%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQHYGYMILVVP 181
++TG D +K+W + +CL + + + + L +S + + A+ + + +P
Sbjct: 320 VITGSDDRLVKIWSMETALCLASCRGHEGDITDLAVSSNNALVASASNDFVIRVWRLP 377
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/54 (27%), Positives = 22/54 (40%)
Frame = +1
Query: 136 SSWISALRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIW 297
S W+ + + S AN + S + + NGT TG D AR+W
Sbjct: 424 SQWLPRIYVPSPSDANTGSTSNASQ-SHQILCCAYNANGTIFVTGSSDSNARVW 476
>At1g47610.1 68414.m05288 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein (GI:2739374)
[Arabidopsis thaliana]
Length = 351
Score = 31.9 bits (69), Expect = 0.27
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSL 109
L + +D T+K+W+ H C+ +++ D VNS+
Sbjct: 150 LYSASWDRTVKVWRIHDLKCIESIKAHDDAVNSV 183
>At1g04140.2 68414.m00404 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 793
Score = 31.9 bits (69), Expect = 0.27
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRT 76
+ +G DH ++LW A +G C+RT
Sbjct: 161 VASGSLDHEVRLWNAKTGECIRT 183
>At1g04140.1 68414.m00403 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 790
Score = 31.9 bits (69), Expect = 0.27
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRT 76
+ +G DH ++LW A +G C+RT
Sbjct: 161 VASGSLDHEVRLWNAKTGECIRT 183
>At5g64730.1 68418.m08140 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Will die slowly protein (SP:Q9V3J8) [Fruit
fly] {Drosophila m.]
Length = 299
Score = 31.5 bits (68), Expect = 0.36
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 11 VTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEIS 118
+T G D TI+LW H G+ ++T + +V + ++
Sbjct: 34 LTCGKDRTIRLWNPHRGILIKTYKSHGREVRDVHVT 69
>At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; WD-repeat protein, carrot, PIR:T14352
Length = 444
Score = 31.5 bits (68), Expect = 0.36
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Frame = +2
Query: 8 LVTGGY--DHTIKLWQAHSGVCLRTMQHPDSQVNSL--EISPTSMVAAAGFQHYGYMILV 175
L TGG D IK W H+G CL +++ SQV SL S ++++ GF +
Sbjct: 316 LATGGGVGDGKIKFWNTHTGACLNSVE-TGSQVCSLLWSQSERELLSSHGFTQNQLTLWK 374
Query: 176 VPIQTRSQLLRTSPKTYLELGFRKMALGCT 265
P + S++ + T L + GCT
Sbjct: 375 YP--SMSKMAELNGHTSRVLFMAQSPNGCT 402
>At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 31.5 bits (68), Expect = 0.36
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 238 FQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPV 357
F +G ++ + GEDC R+W RT ++ +V + V
Sbjct: 226 FSPDGKYIASAGEDCVVRVWSITEEERTDTYEVAEVDSGV 265
Score = 28.7 bits (61), Expect = 2.5
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQH 85
L++ D T++LW+ CLRT H
Sbjct: 336 LLSSSVDETVRLWRVGCDECLRTFTH 361
>At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 31.5 bits (68), Expect = 0.36
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 238 FQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPV 357
F +G ++ + GEDC R+W RT ++ +V + V
Sbjct: 226 FSPDGKYIASAGEDCVVRVWSITEEERTDTYEVAEVDSGV 265
Score = 28.7 bits (61), Expect = 2.5
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQH 85
L++ D T++LW+ CLRT H
Sbjct: 336 LLSSSVDETVRLWRVGCDECLRTFTH 361
>At1g49450.1 68414.m05543 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 471
Score = 31.5 bits (68), Expect = 0.36
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSL 109
L +G +D T+K+W+ CL +++ D VN++
Sbjct: 260 LYSGSWDKTLKVWRLSDSKCLESIEAHDDAVNTV 293
>At1g15470.1 68414.m01860 transducin family protein / WD-40 repeat
family protein Strong similarity to gb AF096285
serine-threonine kinase receptor-associated protein from
Mus musculus and contains 5 PF|00400 WD40, G-beta repeat
domains. EST gb|F14050 comes from this gene
Length = 333
Score = 31.5 bits (68), Expect = 0.36
Identities = 20/75 (26%), Positives = 28/75 (37%), Gaps = 1/75 (1%)
Frame = +1
Query: 208 DISKNVSRVGFQ-KNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQ 384
D+ NV + K+G GGED +D + C K PV+ V P
Sbjct: 220 DMPCNVESASLEPKHGNTFIAGGEDMWVHRFDFQTGEEIGCNKGHH--GPVHCVRYAPGG 277
Query: 385 SQIMVGDQSGIIHIW 429
G + G + IW
Sbjct: 278 ESYTSGSEDGTVRIW 292
Score = 29.9 bits (64), Expect = 1.1
Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 1/103 (0%)
Frame = +1
Query: 187 DPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAV 366
D + TFE V KN + D TA+IW+ F+ + V A
Sbjct: 47 DWIGTFEGHKGAVWSCSLDKNAIRAASASADFTAKIWNALTGDELHS---FEHKHIVRAC 103
Query: 367 MLHPDQSQIMVGDQSGIIHIWDL-KTDQNEQLIPEAEASIQDI 492
D +++ G I+ I+DL + D + + + SI+ +
Sbjct: 104 AFSEDTHRLLTGGMEKILRIFDLNRPDAPPKEVGNSPGSIRTV 146
Score = 28.3 bits (60), Expect = 3.3
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Frame = +1
Query: 187 DPVTTFEDISKNVSRV-GFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNA 363
D + +FE K++ R F ++ + TGG + RI+D P +++ +
Sbjct: 89 DELHSFEH--KHIVRACAFSEDTHRLLTGGMEKILRIFDLNR-PDAPPKEVGNSPGSIRT 145
Query: 364 V-MLHPDQSQIMVGDQSGIIHIWDLKTDQ 447
V LH D + + +G I +WD+++D+
Sbjct: 146 VEWLHSDNTILSSCTDTGDIRLWDIRSDK 174
>At5g63010.1 68418.m07905 WD-40 repeat family protein contains 4
WD-40 repeats (PF00400);low similarity to
photomorphogenesis repressor (COP1) GI:2702280
[Arabidopsis thaliana] and COP1 GI:11127996 [Ipomoea
nil]
Length = 343
Score = 31.1 bits (67), Expect = 0.47
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Frame = +1
Query: 247 NGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQ----APVNAVMLHP-DQSQIMVGDQS 411
N +YTG +DC WD R +P ++FQ V + +P D I G
Sbjct: 175 NPNLVYTGSDDCKFSCWDIRDSPAD--NRVFQNSKVHTMGVCCISSNPSDPYSIFTGSYD 232
Query: 412 GIIHIWDLKT 441
+ +WD ++
Sbjct: 233 ETLRVWDTRS 242
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +1
Query: 259 MYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMV 399
++TG D T R+WD R+ R + + V + HP S +++
Sbjct: 226 IFTGSYDETLRVWDTRSVSRPLNETSVSLGGGVWRIKHHPSLSGVVL 272
>At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat family
protein contains G-protein beta WD-40 repeats
Length = 539
Score = 31.1 bits (67), Expect = 0.47
Identities = 13/51 (25%), Positives = 29/51 (56%)
Frame = +2
Query: 5 ALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQHY 157
++ +G +D ++++W S C++T++H D V L T++ + +G Y
Sbjct: 269 SIFSGSWDMSVRIWDRSSMKCVKTLRHSD-WVWGLAPHETTLASTSGSDVY 318
Score = 27.5 bits (58), Expect = 5.8
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Frame = +1
Query: 253 TWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMVGDQSGIIHIWD 432
T +++G D + RIWD + +C K + V + H + ++IWD
Sbjct: 268 TSIFSGSWDMSVRIWDRSSM---KCVKTLRHSDWVWGLAPH---ETTLASTSGSDVYIWD 321
Query: 433 LKTDQNEQLIPEA-EASIQDIAIDPAGKMM 519
+ ++ +IP+A E + +A G +
Sbjct: 322 VSSETPLAIIPDAHEGTTYSLARSHTGDFL 351
>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats (PF00400);
similar to transducin homolog sazD - Homo sapiens,
EMBL:U02609
Length = 876
Score = 31.1 bits (67), Expect = 0.47
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 3/106 (2%)
Frame = +1
Query: 199 TFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIF-QVQAPVNAVMLH 375
TFE + +V R F +GT + G D ++W+ + C + Q + V A+ +
Sbjct: 578 TFEGHTSSVLRASFITDGTQFVSCGADGLLKLWNVNT---SECIATYDQHEDKVWALAVG 634
Query: 376 PDQSQIMVGDQSGIIHIWDLKT--DQNEQLIPEAEASIQDIAIDPA 507
I G +I++W T D+ + E EA ++ ++ A
Sbjct: 635 KKTEMIATGGGDAVINLWHDSTASDKEDDFRKEEEAILRGQELENA 680
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQ-HPDSQVNSLEISPTSMVAAAG 145
++T D T+K+W G CL+T + H S + + I+ + + G
Sbjct: 556 VMTASGDKTVKIWAISDGSCLKTFEGHTSSVLRASFITDGTQFVSCG 602
Score = 28.7 bits (61), Expect = 2.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 2 VALVTGGYDHTIKLWQAHSGVCL 70
V +VTG D T++LW A S C+
Sbjct: 417 VLIVTGSKDKTVRLWNATSKSCI 439
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +1
Query: 121 NIDGSSSWISALRLYDLSSANPDP--VTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARI 294
NI S S + +R++DL++ N + + E V+ + ++G +++ G D +
Sbjct: 159 NILISGSDDATVRVWDLNAKNTEKKCLAIMEKHFSAVTSIALSEDGLTLFSAGRDKVVNL 218
Query: 295 WD 300
WD
Sbjct: 219 WD 220
>At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 825
Score = 30.7 bits (66), Expect = 0.62
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISP 121
L++ D T++LW S CL+ H D V ++ +P
Sbjct: 482 LLSSSMDKTVRLWDLSSKTCLKVFSHSD-YVTCIQFNP 518
>At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; similar to "Will die slowly" protein,
Drosophia; putative cdc20 protein - Arabidopsis
thaliana, EMBL:AF029262
Length = 411
Score = 30.7 bits (66), Expect = 0.62
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +2
Query: 8 LVTGGY--DHTIKLWQAHSGVCLRTMQHPDSQVNSL--EISPTSMVAAAGF 148
L TGG D IK W H+G CL +++ SQV SL S ++++ GF
Sbjct: 283 LATGGGVGDGKIKFWNTHTGACLNSVE-TGSQVCSLLWSKSERELLSSHGF 332
>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 883
Score = 30.7 bits (66), Expect = 0.62
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISP 121
L++ D T++LW S CL+ H D V ++ +P
Sbjct: 527 LLSSSMDKTVRLWNLSSQTCLKVFSHSD-YVTCIQFNP 563
>At2g46280.3 68415.m05757 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 254
Score = 30.7 bits (66), Expect = 0.62
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = +1
Query: 208 DISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQV--QAPVNAVMLHPD 381
D K ++R + + +GGED RIWD + Q +V + + ++ D
Sbjct: 146 DGKKRINRAVWGPLNQTIVSGGEDKVIRIWDAETGKLLK-QSDEEVGHKKDITSLCKAAD 204
Query: 382 QSQIMVGDQSGIIHIWDLKT 441
S + G +WD++T
Sbjct: 205 DSHFLTGSLDKTAKLWDMRT 224
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQHY 157
+V+GG D I++W A +G + ++ D +V + TS+ AA H+
Sbjct: 163 IVSGGEDKVIRIWDAETG---KLLKQSDEEVGHKK-DITSLCKAADDSHF 208
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQHY 157
L+TG D T KLW SG L T + ++ S++ + +A H+
Sbjct: 67 LITGSADQTAKLWDVKSGKELFTFKF-NAPTRSVDFAVGDRLAVITTDHF 115
>At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 30.7 bits (66), Expect = 0.62
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = +1
Query: 208 DISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQV--QAPVNAVMLHPD 381
D K ++R + + +GGED RIWD + Q +V + + ++ D
Sbjct: 146 DGKKRINRAVWGPLNQTIVSGGEDKVIRIWDAETGKLLK-QSDEEVGHKKDITSLCKAAD 204
Query: 382 QSQIMVGDQSGIIHIWDLKT 441
S + G +WD++T
Sbjct: 205 DSHFLTGSLDKTAKLWDMRT 224
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQHY 157
+V+GG D I++W A +G + ++ D +V + TS+ AA H+
Sbjct: 163 IVSGGEDKVIRIWDAETG---KLLKQSDEEVGHKK-DITSLCKAADDSHF 208
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQHY 157
L+TG D T KLW SG L T + ++ S++ + +A H+
Sbjct: 67 LITGSADQTAKLWDVKSGKELFTFKF-NAPTRSVDFAVGDRLAVITTDHF 115
>At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 30.7 bits (66), Expect = 0.62
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = +1
Query: 208 DISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQV--QAPVNAVMLHPD 381
D K ++R + + +GGED RIWD + Q +V + + ++ D
Sbjct: 146 DGKKRINRAVWGPLNQTIVSGGEDKVIRIWDAETGKLLK-QSDEEVGHKKDITSLCKAAD 204
Query: 382 QSQIMVGDQSGIIHIWDLKT 441
S + G +WD++T
Sbjct: 205 DSHFLTGSLDKTAKLWDMRT 224
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQHY 157
+V+GG D I++W A +G + ++ D +V + TS+ AA H+
Sbjct: 163 IVSGGEDKVIRIWDAETG---KLLKQSDEEVGHKK-DITSLCKAADDSHF 208
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQHY 157
L+TG D T KLW SG L T + ++ S++ + +A H+
Sbjct: 67 LITGSADQTAKLWDVKSGKELFTFKF-NAPTRSVDFAVGDRLAVITTDHF 115
>At2g40360.1 68415.m04977 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to block of proliferation protein Bop1
(GI:1679772) [Mus musculus]
Length = 753
Score = 30.7 bits (66), Expect = 0.62
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = +1
Query: 223 VSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHP 378
V+ + +G W+ +G D + R+W+ RC K++Q + V +P
Sbjct: 426 VTSISTDSSGEWIASGSTDGSVRMWEVETG---RCLKVWQFDEAIMCVAWNP 474
>At5g27080.1 68418.m03231 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis};
Length = 466
Score = 30.3 bits (65), Expect = 0.82
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +2
Query: 8 LVTGGY--DHTIKLWQAHSGVCLRTMQHPDSQVNSL 109
L TGG D IK W H+G CL +++ SQV SL
Sbjct: 314 LATGGGVGDGKIKFWNTHTGACLNSVE-TGSQVCSL 348
>At4g35370.1 68417.m05025 transducin family protein / WD-40 repeat
family protein contains 4 (3 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 414
Score = 30.3 bits (65), Expect = 0.82
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSL 109
+ +G D +K+W +G C TM+H + +V+++
Sbjct: 230 VASGSEDKKVKVWDVATGKCKVTMEHHEKKVHAV 263
>At4g29830.1 68417.m04246 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400); G
protein beta subunit-like protein, Schistosoma mansoni,
gb:U30261
Length = 321
Score = 30.3 bits (65), Expect = 0.82
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAA 142
L+TG D T+KLW+ +RT V +L P+ ++AA+
Sbjct: 33 LLTGSLDETVKLWRPDELDLVRTNTGHSLGVAALAAHPSGIIAAS 77
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/52 (26%), Positives = 20/52 (38%)
Frame = +1
Query: 355 VNAVMLHPDQSQIMVGDQSGIIHIWDLKTDQNEQLIPEAEASIQDIAIDPAG 510
V +V PD I G + +WDLK Q + + +A P G
Sbjct: 246 VLSVDASPDGGAIATGSSDRTVRLWDLKMRAAIQTMSNHNDQVWSVAFRPPG 297
>At3g27640.1 68416.m03452 transducin family protein / WD-40 repeat
family protein contains seven WD-40 G-protein beta
repeats; similar to RA-regulated nuclear
matrix-associated protein (GI:14161320) {Homo sapiens}
Length = 535
Score = 30.3 bits (65), Expect = 0.82
Identities = 19/99 (19%), Positives = 40/99 (40%), Gaps = 2/99 (2%)
Frame = +1
Query: 172 SSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIF--QV 345
+S DP T E S + + +GT++ +D +++ + Q ++
Sbjct: 278 ASPQSDPTNTKEKRSHGIVSLSQDSSGTYLTASCKDNRIYLYNTLRLDKGPVQSFSGCRI 337
Query: 346 QAPVNAVMLHPDQSQIMVGDQSGIIHIWDLKTDQNEQLI 462
+ M+ PD ++ G G +IW + Q + +I
Sbjct: 338 DSFFVRTMISPDGEYVLSGSSDGNAYIWQVNKPQVDPII 376
>At1g24130.1 68414.m03044 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats
(PF00400);similar to beta transducin-like protein
HET-D2Y (GI:17225210) [Podospora anserina].
Length = 415
Score = 30.3 bits (65), Expect = 0.82
Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 2/130 (1%)
Frame = +1
Query: 76 NAASRFASEQLGDLTNIDGSSSWISALRLYDLSSANP-DPVTTFEDISKNVSRVGFQKNG 252
+A S A Q G L S+SW + +++ S D + D + N V K+G
Sbjct: 193 DAVSSLALSQDGSLLY---SASWDRSFKIWRTSDFKCLDSIEKAHDDAINAIVVS--KDG 247
Query: 253 TWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMVGDQSGIIHIWD 432
++YTG D ++W+ + + + + + VNA+ + D + G I +W+
Sbjct: 248 -FVYTGSADKKIKVWNKKDKKHSLVATLTKHLSAVNALAISEDGKVLYSGACDRSILVWE 306
Query: 433 -LKTDQNEQL 459
L +E+L
Sbjct: 307 RLINGDDEEL 316
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 30.3 bits (65), Expect = 0.82
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +1
Query: 115 LTNIDGSSSWISALRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARI 294
LT + SSSW +RL+D+ A+ V TF + +V V F+ +G + + D
Sbjct: 488 LTQLLASSSWDYTVRLWDV-FASKGTVETFRH-NHDVLTVAFRPDGKQLASSTLDGQINF 545
Query: 295 WD 300
WD
Sbjct: 546 WD 547
Score = 29.1 bits (62), Expect = 1.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSL 109
L TG D+ +K+W SG C T + V +L
Sbjct: 364 LATGADDNKVKVWNVMSGTCFITFTEHTNAVTAL 397
Score = 29.1 bits (62), Expect = 1.9
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 277 DCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMVGDQSGIIHIWD 432
D T R+WD A+ T + F+ V V PD Q+ G I+ WD
Sbjct: 498 DYTVRLWDVFASKGT--VETFRHNHDVLTVAFRPDGKQLASSTLDGQINFWD 547
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 30.3 bits (65), Expect = 0.82
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +1
Query: 115 LTNIDGSSSWISALRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARI 294
LT + SSSW +RL+D+ A+ V TF + +V V F+ +G + + D
Sbjct: 528 LTQLLASSSWDYTVRLWDV-FASKGTVETFRH-NHDVLTVAFRPDGKQLASSTLDGQINF 585
Query: 295 WD 300
WD
Sbjct: 586 WD 587
Score = 29.1 bits (62), Expect = 1.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSL 109
L TG D+ +K+W SG C T + V +L
Sbjct: 404 LATGADDNKVKVWNVMSGTCFITFTEHTNAVTAL 437
Score = 29.1 bits (62), Expect = 1.9
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 277 DCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMVGDQSGIIHIWD 432
D T R+WD A+ T + F+ V V PD Q+ G I+ WD
Sbjct: 538 DYTVRLWDVFASKGT--VETFRHNHDVLTVAFRPDGKQLASSTLDGQINFWD 587
>At5g27945.1 68418.m03364 transducin family protein / WD-40 repeat
family protein fizzy-related (FZR); contains 6 WD-40
repeats (PF00400); WD-repeat protein,
carrot,(gi:2253631) PIR:T14352
Length = 428
Score = 29.9 bits (64), Expect = 1.1
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +2
Query: 8 LVTGGY--DHTIKLWQAHSGVCLRTMQHPDSQVNSL--EISPTSMVAAAGF 148
L TGG D I W H+G CL +++ SQV SL S +++A GF
Sbjct: 300 LATGGGVGDGKINFWNTHTGACLNSVE-TGSQVCSLLWSKSERELLSAHGF 349
>At5g11490.1 68418.m01341 adaptin family protein similar to
SP|Q9WV76 Adapter-related protein complex 4 beta 1
subunit (Beta subunit of AP- 4) {Mus musculus},
beta-adaptin Drosophila 1 {Drosophila melanogaster}
GI:434902; contains Pfam profile: PF01602 Adaptin N
terminal region
Length = 841
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 349 APVNAVMLHPDQSQIMVGDQSGIIHIWDLKTDQNEQLIPEAEA 477
A + ++MLH +Q++ S + IW L+ +E+ E E+
Sbjct: 177 ATLKSLMLHDSDAQVVANCLSALQEIWSLEASHSEEACREKES 219
>At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI3 (SP:O22469) [Arabidopsis thaliana]
Length = 424
Score = 29.9 bits (64), Expect = 1.1
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Frame = +1
Query: 256 WMYTGGEDCTARIWDPRAAPRTRCQKIFQV----QAPVNAVMLHPDQSQIM--VGDQSGI 417
++ +G +D +WD A + V Q+ + V H I GD +
Sbjct: 184 YLLSGSQDQRICLWDVSATATDKVLNPMHVYEGHQSIIEDVAWHMKNENIFGSAGDDCQL 243
Query: 418 IHIWDLKTDQNEQLIPEAEASIQDIAIDP 504
+ IWDL+T+Q + + E I ++ +P
Sbjct: 244 V-IWDLRTNQMQHQVKVHEREINYLSFNP 271
Score = 27.5 bits (58), Expect = 5.8
Identities = 27/131 (20%), Positives = 53/131 (40%), Gaps = 7/131 (5%)
Frame = +1
Query: 133 SSSWISALRLYDLSSANPD----PVTTFEDISKNVSRVGFQ-KNGTWMYTGGEDCTARIW 297
S S + L+D+S+ D P+ +E + V + KN + G+DC IW
Sbjct: 187 SGSQDQRICLWDVSATATDKVLNPMHVYEGHQSIIEDVAWHMKNENIFGSAGDDCQLVIW 246
Query: 298 DPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIM-VGDQSGIIHIWDL-KTDQNEQLIPEA 471
D R K+ + + +N + +P ++ + ++DL K ++ +
Sbjct: 247 DLRTNQMQHQVKVHERE--INYLSFNPFNEWVLATASSDSTVALFDLRKLTAPLHVLSKH 304
Query: 472 EASIQDIAIDP 504
E + + DP
Sbjct: 305 EGEVFQVEWDP 315
>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
family protein contains 6 (4 significant) WD-40 repeats
(PF0400); nuclear protein HIRA, mouse, PIR:S68141
Length = 1051
Score = 29.9 bits (64), Expect = 1.1
Identities = 11/48 (22%), Positives = 23/48 (47%)
Frame = +1
Query: 376 PDQSQIMVGDQSGIIHIWDLKTDQNEQLIPEAEASIQDIAIDPAGKMM 519
PD S + G +HIW+++T ++ + ++ + DP G +
Sbjct: 128 PDDSMLASGSLDNTVHIWNMRTGMCTTVLRGHLSLVKGVTWDPIGSFI 175
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/45 (24%), Positives = 21/45 (46%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAA 142
L +G D+T+ +W +G+C ++ S V + P A+
Sbjct: 133 LASGSLDNTVHIWNMRTGMCTTVLRGHLSLVKGVTWDPIGSFIAS 177
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/56 (23%), Positives = 24/56 (42%)
Frame = +1
Query: 352 PVNAVMLHPDQSQIMVGDQSGIIHIWDLKTDQNEQLIPEAEASIQDIAIDPAGKMM 519
PVN++ HP G G ++IWD + + SI ++ G+++
Sbjct: 243 PVNSIAFHPIYGTFATGGCDGFVNIWDGNNKKRLYQYSKYPTSISALSFSRDGQLL 298
Score = 27.5 bits (58), Expect = 5.8
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +1
Query: 265 TGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMVGDQSGIIHIWDLKT- 441
TG D T + WDPR A ++ P + +++V ++I+DL+
Sbjct: 115 TGSWDKTVKCWDPRGASGPERTQVGTYLQPERVYSMSLVGHRLVVATAGRHVNIYDLRNM 174
Query: 442 DQNEQ 456
Q EQ
Sbjct: 175 SQPEQ 179
>At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similiar to rab11 binding
protein (GI:4512103) [Bos taurus]
Length = 903
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISP 121
L++ D T++LW + CL+ H D V ++ SP
Sbjct: 520 LLSSSMDKTVRLWDIETKTCLKLFAHND-YVTCIQFSP 556
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHS-GVCLRTMQHPDSQVNSLEISP 121
L T +D TIK+W A G LRT+ + V S++ P
Sbjct: 565 LATSSFDKTIKIWDASDPGYFLRTISGHAAPVMSIDFHP 603
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPT--SMVAAAGFQ 151
LV + +KLW SG C+ + + ++ +S+ P+ ++ G+Q
Sbjct: 689 LVASVSEDAVKLWSLSSGDCIHELSNSGNKFHSVVFHPSYPDLLVIGGYQ 738
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHS-GVCLRTMQHPDSQVNSLEISP 121
L T +D TIK+W A G LRT+ + V S++ P
Sbjct: 567 LATSSFDKTIKIWDASDPGYFLRTISGHAAPVMSIDFHP 605
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPT--SMVAAAGFQ 151
LV + +KLW SG C+ + + ++ +S+ P+ ++ G+Q
Sbjct: 691 LVASVSEDAVKLWSLSSGDCIHELSNSGNKFHSVVFHPSYPDLLVIGGYQ 740
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHS-GVCLRTMQHPDSQVNSLEISP 121
L T +D TIK+W A G LRT+ + V S++ P
Sbjct: 567 LATSSFDKTIKIWDASDPGYFLRTISGHAAPVMSIDFHP 605
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPT--SMVAAAGFQ 151
LV + +KLW SG C+ + + ++ +S+ P+ ++ G+Q
Sbjct: 691 LVASVSEDAVKLWSLSSGDCIHELSNSGNKFHSVVFHPSYPDLLVIGGYQ 740
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHS-GVCLRTMQHPDSQVNSLEISP 121
L T +D TIK+W A G LRT+ + V S++ P
Sbjct: 567 LATSSFDKTIKIWDASDPGYFLRTISGHAAPVMSIDFHP 605
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPT--SMVAAAGFQ 151
LV + +KLW SG C+ + + ++ +S+ P+ ++ G+Q
Sbjct: 691 LVASVSEDAVKLWSLSSGDCIHELSNSGNKFHSVVFHPSYPDLLVIGGYQ 740
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHS-GVCLRTMQHPDSQVNSLEISP 121
L T +D TIK+W A G LRT+ + V S++ P
Sbjct: 567 LATSSFDKTIKIWDASDPGYFLRTISGHAAPVMSIDFHP 605
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPT--SMVAAAGFQ 151
LV + +KLW SG C+ + + ++ +S+ P+ ++ G+Q
Sbjct: 691 LVASVSEDAVKLWSLSSGDCIHELSNSGNKFHSVVFHPSYPDLLVIGGYQ 740
>At1g49540.1 68414.m05553 transducin family protein / WD-40 repeat
family protein similar to signal transducer and
activator of transcription interacting protein 1
(GI:15929722) {Mus musculus}; similar to hypothetical
protein GB:AAD43147 GI:5430747 from (Arabidopsis
thaliana); contains Pfam PF00400: WD domain, G-beta
repeat (11 copies, 2 weak)
Length = 840
Score = 29.9 bits (64), Expect = 1.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 379 DQSQIMVGDQSGIIHIWDLKTDQNEQ 456
D+ ++ GD GII +W+L T N+Q
Sbjct: 81 DRQYLLSGDSDGIIILWELSTLNNDQ 106
>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 9
(SP:Q9NSI6) {Homo sapiens}; contains Pfam PF00400: WD
domain, G-beta repeat (4 copies)
Length = 1677
Score = 29.5 bits (63), Expect = 1.4
Identities = 10/45 (22%), Positives = 23/45 (51%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAA 142
++TG D +K+W + CL + + + + L +S ++ A+
Sbjct: 260 VITGSDDRLVKVWSMDTAYCLASCRGHEGDITDLAVSSNNIFIAS 304
>At5g45760.2 68418.m05626 transducin family protein / WD-40 repeat
family protein
Length = 334
Score = 29.5 bits (63), Expect = 1.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 238 FQKNGTWMYTGGEDCTARIWD 300
FQ+ G ++ +GG D T +IWD
Sbjct: 259 FQEKGRFLISGGNDKTVKIWD 279
>At5g45760.1 68418.m05625 transducin family protein / WD-40 repeat
family protein
Length = 360
Score = 29.5 bits (63), Expect = 1.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 238 FQKNGTWMYTGGEDCTARIWD 300
FQ+ G ++ +GG D T +IWD
Sbjct: 285 FQEKGRFLISGGNDKTVKIWD 305
>At4g21130.1 68417.m03055 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); some
similarity to a group of proteins with homology to
mammalian apoptosis regulators identified in zebrafish
(PUBMED:10917738)Apaf-1(gi:7677507)
Length = 537
Score = 29.5 bits (63), Expect = 1.4
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +1
Query: 214 SKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKI 336
+K + +G ++ TGG DC +WD R + K+
Sbjct: 206 NKQSLALAVSSDGRYLATGGVDCHVHLWDIRTREHVQVNKL 246
>At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogenesis
repressor; identical to COP1 regulatory protein/FUSCA
protein FUS1 GI:402685 SP:P43254
Length = 675
Score = 29.5 bits (63), Expect = 1.4
Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 3/105 (2%)
Frame = +1
Query: 133 SSSWISALRLYDLSSANPDPVTTFEDISKNVSRVGFQKNG-TWMYTGGEDCTARIWDPRA 309
SS + + ++D+++ + +E+ K V F + + + +G +DC ++W
Sbjct: 438 SSDYEGIVTVWDVTTRQS--LMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVKVW---- 491
Query: 310 APRTRCQKI-FQVQAPVNAVMLHPDQSQ-IMVGDQSGIIHIWDLK 438
R I ++A + V +P S I VG IH +DL+
Sbjct: 492 CTRQEASVINIDMKANICCVKYNPGSSNYIAVGSADHHIHYYDLR 536
>At2g08986.1 68415.m01009 hypothetical protein
Length = 1218
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/84 (19%), Positives = 36/84 (42%)
Frame = +2
Query: 23 YDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQHYGYMILVVPIQTRSQL 202
+ +T+K ++ V + H D + V H + V ++++ ++
Sbjct: 398 FGYTMKALRSKKKVDTKPKTHTDFDYTMKALRSKKKVNTKPKTHMDFGYTVKALRSKKKV 457
Query: 203 LRTSPKTYLELGFRKMALGCTQEV 274
T PKT+++ G+ AL ++V
Sbjct: 458 ENTKPKTHMDFGYTMKALRSKKKV 481
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/86 (19%), Positives = 38/86 (44%)
Frame = +2
Query: 23 YDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQHYGYMILVVPIQTRSQL 202
+D+T+K ++ V + H D + V H + + ++++ ++
Sbjct: 790 FDYTMKALRSKKKVNTKPKTHMDFGYTVKALRSNKKVDTKPKTHMDFGYTMKALRSKKKV 849
Query: 203 LRTSPKTYLELGFRKMALGCTQEVRT 280
T PKT+++ G+ A C ++V T
Sbjct: 850 -DTKPKTHIDFGYTMKAFRCKKKVDT 874
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 176 VPIQTRSQLLRTSPKTYLELGFRKMALGCTQEVRTAQP 289
V ++ S L T PKT+++LG+ AL ++V +P
Sbjct: 586 VGVRIVSLLEDTKPKTHMDLGYTMKALRSKKKVEDTKP 623
>At2g01330.1 68415.m00050 transducin family protein / WD-40 repeat
family protein contains 10 WD-40 repeats (PF00400);
similar to 66kDa stress protein (SWISS-PROT: P90587)[
Physarum polycephalum (Slime mold)]
Length = 474
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 355 VNAVMLHPDQSQIMVGDQSGIIHIWDLKTDQN 450
V A ++ PD + +VG Q G +HI+ + D N
Sbjct: 314 VAASVISPDGKEAIVGGQDGKLHIYSVSGDNN 345
>At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4
protein (ZFWD4) contains 6 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd4 protein (GI:12057170)
[Arabidopsis thaliana]
Length = 419
Score = 29.1 bits (62), Expect = 1.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSL 109
L +G D TIK+W ++ C+ T++ V SL
Sbjct: 271 LYSGSVDKTIKMWDLNTLQCIMTLKQHTGTVTSL 304
>At4g34380.1 68417.m04884 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Myosin heavy chain kinase B (MHCK
B).(SP:P90648) [Dictyostelium discoideum]
Length = 495
Score = 29.1 bits (62), Expect = 1.9
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSL 109
L + +D TIK+W+ CL ++ D +NS+
Sbjct: 250 LYSSSWDTTIKVWRIADSKCLESIHAHDDAINSV 283
>At3g51930.1 68416.m05696 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
myosin heavy chain kinase B (SP:P90648)(GI:1903458)
[Dictyostelium discoideum]
Length = 415
Score = 29.1 bits (62), Expect = 1.9
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSL 109
+ +G +D T+K+W+ CL +++ D +N L
Sbjct: 187 IYSGSWDKTLKVWRLSDLKCLESIKAHDDAINGL 220
>At2g18900.1 68415.m02205 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
related to LACK protective antigen (GI:13625467)
[Leishmania donovani]
Length = 804
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Frame = +1
Query: 280 CTARIWD-PRAAPRTRCQKIFQVQAP--VNAVMLHPDQSQIMVGDQSGIIHIW 429
C IWD P R + + +NA HP + I GD +G + IW
Sbjct: 187 CKIHIWDVPSGGSRHAVSRKMTLHHTKVINAFAFHPTERVIAAGDVTGRVLIW 239
>At4g28450.1 68417.m04071 transducin family protein / WD-40 repeat
family protein SOF1 (involved in rRNA processing)
protein-yeast
Length = 442
Score = 28.7 bits (61), Expect = 2.5
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 133 SSSWISALRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWD-PR 306
S+S +RL+D+SS V F V + +G + + G DCT R+W+ PR
Sbjct: 74 SASMDGDIRLWDISSRRT--VCQFPGHQGAVRGLTASTDGNVLVSCGTDCTVRLWNVPR 130
>At4g18905.1 68417.m02787 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 494
Score = 28.7 bits (61), Expect = 2.5
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSL 109
L + D +K+W +G C TM+H +V ++
Sbjct: 281 LASASADKKVKVWDVATGTCKITMEHHTKEVQAV 314
Score = 28.3 bits (60), Expect = 3.3
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 3/96 (3%)
Frame = +1
Query: 172 SSANPDPVTTFEDISKNVSRVGFQ-KNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQ 348
S NP + VS + + + TG D + ++WD + C Q
Sbjct: 390 SDLNPTYTIQAHAQDRGVSSISYNISTPNLLATGSMDKSVKLWD-LSNNEPSCIATHQPN 448
Query: 349 A-PVNAVMLHPDQSQIM-VGDQSGIIHIWDLKTDQN 450
A V ++ D ++ +G G +H+WD D N
Sbjct: 449 AGAVFSISFAVDNPFLLAIGGSKGELHVWDTLLDAN 484
>At4g18900.1 68417.m02786 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 461
Score = 28.7 bits (61), Expect = 2.5
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSL 109
L + D +K+W +G C TM+H +V ++
Sbjct: 249 LASASADKKVKVWDVATGTCKITMEHHTKEVQAV 282
>At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1135
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 2 VALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSL 109
+ +VT G D TIK+W A +G L T + ++ V S+
Sbjct: 479 LCVVTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSV 514
>At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1137
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 2 VALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSL 109
+ +VT G D TIK+W A +G L T + ++ V S+
Sbjct: 479 LCVVTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSV 514
>At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 2 VALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSL 109
+ ++T G D TIK+W A +GV T + ++ V S+
Sbjct: 477 LCVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSV 512
>At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 2 VALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSL 109
+ ++T G D TIK+W A +GV T + ++ V S+
Sbjct: 477 LCVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSV 512
>At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-related
similar to BEIGE (GI:3928547) [Rattus norvegicus];
Similar to gb|U70015 lysosomal trafficking regulator from
Mus musculus and contains 2 Pfam PF00400 WD-40, G-beta
repeats. ESTs gb|T43386 and gb|AA395236 come from this
gene
Length = 3601
Score = 28.7 bits (61), Expect = 2.5
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +1
Query: 265 TGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMVGDQSGIIHIWDLKTD 444
+G +DCT IWD + R F V P++A+ ++ D + +V ++ +W + D
Sbjct: 3397 SGSDDCTVIIWDLSSLSFVRQLPDFPV--PISAIYIN-DLTGEIVTAAGTVLAVWSINGD 3453
>At5g64630.2 68418.m08122 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 487
Score = 28.3 bits (60), Expect = 3.3
Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 4/101 (3%)
Frame = +1
Query: 223 VSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQV----QAPVNAVMLHPDQSQ 390
V+ + F +G + +G + IW + + K+ + + V + PD +
Sbjct: 67 VNTIRFSPSGELLASGADGGELFIWKLHPSETNQSWKVHKSLSFHRKDVLDLQWSPDDAY 126
Query: 391 IMVGDQSGIIHIWDLKTDQNEQLIPEAEASIQDIAIDPAGK 513
++ G IWD+ Q++ +Q +A DP K
Sbjct: 127 LISGSVDNSCIIWDVNKGSVHQILDAHCHYVQGVAWDPLAK 167
>At5g64630.1 68418.m08121 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 397
Score = 28.3 bits (60), Expect = 3.3
Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 4/101 (3%)
Frame = +1
Query: 223 VSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQV----QAPVNAVMLHPDQSQ 390
V+ + F +G + +G + IW + + K+ + + V + PD +
Sbjct: 67 VNTIRFSPSGELLASGADGGELFIWKLHPSETNQSWKVHKSLSFHRKDVLDLQWSPDDAY 126
Query: 391 IMVGDQSGIIHIWDLKTDQNEQLIPEAEASIQDIAIDPAGK 513
++ G IWD+ Q++ +Q +A DP K
Sbjct: 127 LISGSVDNSCIIWDVNKGSVHQILDAHCHYVQGVAWDPLAK 167
>At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 709
Score = 28.3 bits (60), Expect = 3.3
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +1
Query: 238 FQKNGTWMYTGGEDCTARIWD 300
F +G ++ + GEDC R+W+
Sbjct: 265 FSHDGKYLASAGEDCVVRVWN 285
>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (10 copies); similar to WD-repeat protein
3 (SP:Q9UNX4) [Homo sapiens]
Length = 955
Score = 28.3 bits (60), Expect = 3.3
Identities = 18/118 (15%), Positives = 49/118 (41%)
Frame = +1
Query: 151 ALRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQ 330
++R++D + F V+ + + K G+ + +G +D +WD +
Sbjct: 87 SIRIWDTEKGTCE--VNFNSHKGAVTALRYNKVGSMLASGSKDNDIILWD--VVGESGLF 142
Query: 331 KIFQVQAPVNAVMLHPDQSQIMVGDQSGIIHIWDLKTDQNEQLIPEAEASIQDIAIDP 504
++ + V ++ +++ + + +WDL+T Q++ + + + DP
Sbjct: 143 RLRGHRDQVTDLVFLDGGKKLVSSSKDKFLRVWDLETQHCMQIVSGHHSEVWSVDTDP 200
>At1g80670.1 68414.m09466 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400) (1
weak); similar to Hypothetical RAE1-like
protein.(SP:Q38942) [Arabidopsis thaliana]; similar to
mRNA-associated protein mrnp 41 ((mRNA export protein)
(GB:AAC28126) (GI:1903456)(RAE1) (MRNP41) (SP:P78406)
[Homo sapiens]
Length = 349
Score = 28.3 bits (60), Expect = 3.3
Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Frame = +1
Query: 70 TNNAASRFASEQLGDLTNIDGSSSWISALRLYDLSSANPDPVTTFE-DISKN--VSRVGF 240
T + A +S +I ++SW + +R +++S + + + IS + V +
Sbjct: 21 TPSPADSISSLSFSPRADILVATSWDNQVRCWEISRSGASLASAPKASISHDQPVLCSAW 80
Query: 241 QKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMVGDQSGII 420
+ +GT +++GG D A++W + + + + P+ A+ P + + G +
Sbjct: 81 KDDGTTVFSGGCDKQAKMWPLLSGGQP--VTVAMHEGPIAAMAWIPGMNLLATGSWDKTL 138
Query: 421 HIWDLK 438
WD +
Sbjct: 139 KYWDTR 144
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPD 91
L TG +D T+K W + T Q PD
Sbjct: 129 LATGSWDKTLKYWDTRQQNPVHTQQLPD 156
>At1g65030.1 68414.m07371 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to PAK/PLC-interacting protein 1 (GI:14211689)
[Homo sapiens]
Length = 345
Score = 28.3 bits (60), Expect = 3.3
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 8/87 (9%)
Frame = +1
Query: 244 KNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQ------IMVGD 405
++GT ++TGGED WD + + V+L + S ++G
Sbjct: 223 ESGT-LFTGGEDRAITAWDTNSGKLAYSIEDAHPARIKGIVVLTRNDSDGSLEDPYLIGS 281
Query: 406 QS--GIIHIWDLKTDQNEQLIPEAEAS 480
S GII +WD++ E P AE +
Sbjct: 282 ASSDGIIRVWDVRMAAKENTKPLAETN 308
>At1g21650.1 68414.m02710 preprotein translocase secA family protein
contains Pfam profiles: PF01043 SecA protein, amino
terminal region, PF00400 WD domain, G-beta repeat,
PF00097 zinc finger, C3HC4 type (RING finger)
Length = 1579
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 14 TGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEI 115
TG D+TIK W G L TM S V++L +
Sbjct: 602 TGSGDNTIKAWSLQDGSLLCTMSGHKSVVSTLVV 635
>At1g20890.1 68414.m02616 expressed protein Location of ESTs OAO242
5' end, gb|Z30466 and OAO242 3' end, gb|Z30467
Length = 197
Score = 28.3 bits (60), Expect = 3.3
Identities = 23/78 (29%), Positives = 35/78 (44%)
Frame = -3
Query: 465 WYQLFILIRFQIPYMYNATLVSNHYLGLIRMKHYCIHRSLNLEYLLTPCTWCSPGIPYPG 286
WY++ I IP +++ L+ N +GL ++ H + R LN E L+ G
Sbjct: 66 WYEVKISYPASIPALFSLQLLKNGVMGL-KVNH--MRRLLNTEKLIFKTESIEEVDNKEG 122
Query: 285 CAVLTSCVHPSAIFLKPN 232
VL + V P I PN
Sbjct: 123 LYVLVT-VEPEGIVAIPN 139
>At5g05480.1 68418.m00590 expressed protein
Length = 608
Score = 27.9 bits (59), Expect = 4.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 133 SSSWISALRLYDLSSANPDPVTTFEDISKNVSR 231
S W+ + L S+A P P F ++ K+VSR
Sbjct: 118 SGLWLGGVELLRTSTAEPSPSGIFWNVRKDVSR 150
>At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400); similar to
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]; contains non-consensus (GC) donor splice sites
at introns 4 and 6
Length = 1017
Score = 27.9 bits (59), Expect = 4.4
Identities = 23/110 (20%), Positives = 48/110 (43%), Gaps = 2/110 (1%)
Frame = +1
Query: 115 LTNIDGSSSWISALRLYDLSSANPDPVTTFEDISKNVSRVGFQKN-GTWMYTGGEDCTAR 291
+ N SS + ++L+D+++ ++ F + K V F + T + +G +DC+ +
Sbjct: 765 IRNYLASSDYDGIVKLWDVTTGQA--ISHFIEHEKRAWSVDFSEACPTKLASGSDDCSVK 822
Query: 292 IWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMV-GDQSGIIHIWDLK 438
+W+ C + A V V P S ++ G + +DL+
Sbjct: 823 LWN---INERNCLGTIRNIANVCCVQFSPQSSHLLAFGSSDFRTYCYDLR 869
>At3g50590.1 68416.m05533 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400); some
similarity to s-tomosyn isoform (GI:4689231)[Rattus
norvegicus]; contains non-consensus AT-AC splice sites
at intron 18
Length = 1606
Score = 27.9 bits (59), Expect = 4.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 373 HPDQSQIMVGDQSGIIHIWDLKTDQ 447
HP I VGD+ G + WD+ T++
Sbjct: 211 HPTLEWIFVGDRRGTLLAWDVSTER 235
>At3g20740.1 68416.m02624 fertilization-independent endosperm
protein (FIE) contains 6 WD-40 repeats (PF00400);
identical to fertilization-independent endosperm protein
(GI:4567095) [Arabidopsis thaliana]
Length = 369
Score = 27.9 bits (59), Expect = 4.4
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = +1
Query: 385 SQIMVGDQSGIIHIWDLKT 441
S + +G+Q G +++WDLK+
Sbjct: 304 SSVAIGNQEGKVYVWDLKS 322
>At3g10530.1 68416.m01264 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400); BING4
(gi:3811380) {Mus musculus]; similar to hypothetical
protein GB:P40055 [Saccharomyces cerevisiae]
Length = 536
Score = 27.9 bits (59), Expect = 4.4
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +1
Query: 283 TARIWDPRA-APRTRCQKIFQVQAPVNAVMLHPDQSQIMVGDQSGIIHIWDLKTDQNEQL 459
T +W P + AP + Q PV++V HP+ + + I IWDL+ + Q
Sbjct: 262 TVTMWKPTSQAPLVQMQCH---PGPVSSVAFHPNGHLMATSGKERKIKIWDLRKFEEVQT 318
Query: 460 I 462
I
Sbjct: 319 I 319
>At3g09080.1 68416.m01067 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats; similar to
JNK-binding protein JNKBP1 (GP:6069583) [Mus musculus]
Length = 1026
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 361 AVMLHPDQSQIMVGDQSGIIHIWDLKTDQNEQLIPEAEASIQDIA 495
A+ + D + GD G +HI+DL+ + + EA IQ ++
Sbjct: 390 ALAVSEDGKYLAAGDCGGNLHIYDLQESEYTCFMDAHEAEIQSLS 434
>At1g29980.2 68414.m03666 expressed protein contains Pfam profile
PF04862: Protein of unknown function, DUF642
Length = 371
Score = 27.9 bits (59), Expect = 4.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -2
Query: 337 ISFDTLYVVQPWDPISW 287
+ TLY VQ WDP +W
Sbjct: 118 VDLQTLYSVQGWDPYAW 134
>At1g29980.1 68414.m03667 expressed protein contains Pfam profile
PF04862: Protein of unknown function, DUF642
Length = 407
Score = 27.9 bits (59), Expect = 4.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -2
Query: 337 ISFDTLYVVQPWDPISW 287
+ TLY VQ WDP +W
Sbjct: 154 VDLQTLYSVQGWDPYAW 170
>At1g04510.1 68414.m00442 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 523
Score = 27.9 bits (59), Expect = 4.4
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 361 AVMLHPDQSQIMVGDQSGIIHIWDLKTDQN 450
A HPD + G I+ IWD+K+ N
Sbjct: 359 AAAFHPDGLILGTGTAQSIVKIWDVKSQAN 388
>At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); rab11 binding protein, Bos
taurus, EMBL:AF117897
Length = 905
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISP 121
L++ D T++LW + CL+ H D V ++ +P
Sbjct: 533 LLSSSMDKTVRLWDIETQSCLKLFAHND-YVTCVQFNP 569
>At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1
protein (ZFWD1) identical to zfwd1 protein (GI:12057164)
[Arabidopsis thaliana]
Length = 430
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSL 109
L +G D++IK+W + C++T+ S V SL
Sbjct: 280 LYSGAMDNSIKVWSLDNLQCIQTLTEHTSVVMSL 313
Score = 27.1 bits (57), Expect = 7.7
Identities = 17/89 (19%), Positives = 39/89 (43%)
Frame = +1
Query: 193 VTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVML 372
+T + K V+ + +YT +D T RIWD + +C + + V ++
Sbjct: 137 LTQLDGHQKVVTGIALPSGSDKLYTASKDETVRIWDCASG---QCTGVLNLGGEVGCII- 192
Query: 373 HPDQSQIMVGDQSGIIHIWDLKTDQNEQL 459
+ ++VG ++ W+++ + + L
Sbjct: 193 -SEGPWLLVG-MPNLVKAWNIQNNADLSL 219
>At2g39680.1 68415.m04868 expressed protein
Length = 84
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 414 ATLVSNHYLGLIRMKHYCIHRSLNLEYL 331
+T V+ + G IR+KH CI +LEYL
Sbjct: 37 STRVTTFFTG-IRLKHICISHFYHLEYL 63
>At1g80710.1 68414.m09470 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400);
similar to damage-specific DNA-binding protein 2 (DDB2)
[Mus musculus]
Length = 516
Score = 27.5 bits (58), Expect = 5.8
Identities = 18/90 (20%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Frame = +1
Query: 187 DPVTTFEDISKNVSRVGFQKNG-TWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNA 363
D + F S VS + FQ+N + + + D R+ D ++ ++ + +
Sbjct: 254 DGIYLFTPHSAPVSSIVFQQNSLSRVISSSYDGLIRLMD---VEKSVFDLVYSTDEAIFS 310
Query: 364 VMLHP-DQSQIMVGDQSGIIHIWDLKTDQN 450
+ P D+ + G G+ ++WDL+ ++
Sbjct: 311 LSQRPNDEQSLYFGQDYGVFNVWDLRAGKS 340
>At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]; similar to rab11 binding protein GI:4512103
from [Bos taurus]
Length = 593
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTS 127
L++ D T++LW+ CL H ++ V +E +P +
Sbjct: 286 LLSASKDKTVRLWRTGCDQCLHVFHH-NNYVTCVEFNPVN 324
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +1
Query: 238 FQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVN---AVMLHPDQS 387
F +G ++ TGGED +IW + + Q Q P+N A++L P ++
Sbjct: 206 FSPDGKYLATGGEDGVVKIWRITLSDSLLASFLRQ-QEPINQQAALVLFPQKA 257
>At1g27470.1 68414.m03349 transducin-related / WD-40 repeat
protein-related contains 6 WD-40 repeats (PF00400) (2
weak); related to KIAA1988 protein (GI:18916910) [Homo
sapiens]
Length = 810
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPT-SMVAAAG 145
LV+G +++ W + G L+ + VN+L SP+ + V +AG
Sbjct: 262 LVSGDSTGSVQFWDSQHGTLLQAHSNHKGDVNALAASPSHNRVFSAG 308
>At1g09000.1 68414.m01004 NPK1-related protein kinase, putative
(ANP1) similar to protein kinase [Nicotiana tabacum]
gi|456309|dbj|BAA05648; identical to cDNA NPK1-related
protein kinase 1S GI:2342422
Length = 666
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = -3
Query: 297 PYPGCAV--LTSCVHPSAIFLKPN 232
P+PG +TSC+ S IF+KP+
Sbjct: 28 PFPGVLADKITSCIRKSKIFIKPS 51
>At5g23730.1 68418.m02782 transducin family protein / WD-40 repeat
family protein contains similarity to photomorphogenesis
repressor protein; contains Pfam PF00400: WD domain,
G-beta repeat (5 copies)
Length = 243
Score = 27.1 bits (57), Expect = 7.7
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +1
Query: 163 YDLSSANPDPVTTFEDISKNVSRVGFQKNG---TWMYTGGEDCTARIWDPRAAP 315
YDL P E + V V + ++G T +G +D T ++WDPR P
Sbjct: 3 YDLEKRTP-VFERDEHGGRRVWSVDYTRHGGASTVGASGSDDGTMQVWDPRCPP 55
>At5g06500.1 68418.m00730 MADS-box family protein contains
similarity to MADS-box transcription factor
Length = 242
Score = 27.1 bits (57), Expect = 7.7
Identities = 17/67 (25%), Positives = 34/67 (50%)
Frame = +1
Query: 283 TARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMVGDQSGIIHIWDLKTDQNEQLI 462
T + DP + +T +KI + +A V+ + ++M Q+G + DL + ++LI
Sbjct: 80 TMKAVDPESYVQTVIEKIEKKRADTRKVITEFEMDELMFQVQNG-RELADLSPTEADKLI 138
Query: 463 PEAEASI 483
P A+ +
Sbjct: 139 PYADKKL 145
>At4g05410.1 68417.m00823 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); U3
snoRNP-associated 55-kDa protein, Homo sapiens,
gb:NP_004695; Vegetatible incompatibility protein
HET-E-1 (SP:Q00808) [Podospora anserina]
Length = 504
Score = 27.1 bits (57), Expect = 7.7
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Frame = +1
Query: 205 EDISKNVSR----VGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVML 372
E +KN SR + +G ++ TGG D IWD R R Q + V+ +
Sbjct: 215 EPRNKNHSRESLALAVSSDGRYLATGGVDRHVHIWDVRT--REHVQAFPGHRNTVSCLCF 272
Query: 373 HPDQSQIMVGDQSGIIHIWDLK 438
S++ G + +W+++
Sbjct: 273 RYGTSELYSGSFDRTVKVWNVE 294
>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
contains Pfam PF02138: Beige/BEACH domain; contains Pfam
PF00400: WD domain, G-beta repeat (3 copies)
Length = 2946
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRT 76
LVTG D T+ LW+ H RT
Sbjct: 2683 LVTGSRDSTVLLWRIHKAFTSRT 2705
>At2g34510.1 68415.m04239 expressed protein contains Pfam profile
PF04862: Protein of unknown function, DUF642
Length = 401
Score = 27.1 bits (57), Expect = 7.7
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -2
Query: 337 ISFDTLYVVQPWDPISW 287
I T+Y VQ WDP +W
Sbjct: 150 IDLQTVYSVQGWDPYAW 166
>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 2 VALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSL 109
+ + T G D TIK+W A +GV T + ++ V S+
Sbjct: 477 LCVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSI 512
>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 2 VALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSL 109
+ + T G D TIK+W A +GV T + ++ V S+
Sbjct: 477 LCVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSI 512
>At1g19750.1 68414.m02469 transducin family protein / WD-40 repeat
family protein similar to Cockayne syndrome
complementaion group A proteins (GI:18077663)[Mus
musculus] and (SP:Q13216)[Homo sapiens]; confirmed by
full-length cDNA GI:15982896
Length = 450
Score = 27.1 bits (57), Expect = 7.7
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +1
Query: 223 VSRVGFQKNGTW-MYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVML 372
V V + + W +YTGG D R WD R A R Q Q V +L
Sbjct: 193 VMSVEWSTSSEWVLYTGGCDGAIRFWDIRRAGCFRVLDNSQTQLGVRPPIL 243
Score = 27.1 bits (57), Expect = 7.7
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +2
Query: 8 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQV 100
L TGG D I+ W C R + + +Q+
Sbjct: 206 LYTGGCDGAIRFWDIRRAGCFRVLDNSQTQL 236
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,719,586
Number of Sequences: 28952
Number of extensions: 286018
Number of successful extensions: 1512
Number of sequences better than 10.0: 158
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1476
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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