Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313E01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    36   0.004
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    31   0.14 
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual      29   0.42 
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    29   0.56 
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    29   0.56 
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   1.7  
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        27   2.2  
SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase Gpd1|Schizo...    26   3.0  
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc...    26   3.9  
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c...    26   3.9  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    26   3.9  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    26   3.9  
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S...    26   3.9  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   5.2  
SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple...    25   5.2  
SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3 |Sc...    25   6.8  
SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase Pp...    25   6.8  
SPCC1795.03 |gms1||UDP-galactose transporter Gms1|Schizosaccharo...    25   9.0  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   9.0  

>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 35.9 bits (79), Expect = 0.004
 Identities = 22/92 (23%), Positives = 40/92 (43%)
 Frame = +3

Query: 186 DINDRVETSKELGISKDTIDIDQYTKDALKFASKDKENIDISNEPFENNKAVSSESKDVD 365
           D+ND++   +    S   +++DQ           +K N +I+N P ++  AV+  S+ V 
Sbjct: 169 DMNDKINVDEAAAKSDSKLNVDQINSTTESEKRVEKVNPNIANNPLKSPDAVAYSSETVS 228

Query: 366 HRVLPFVEETPRLILSNTDGASLKRECDTDIR 461
               P    T   + +N    S K  CD + +
Sbjct: 229 DEKQP----TEHPVSANVPAKSEKAVCDENTK 256


>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 233

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +3

Query: 234 DTIDIDQYTKDALKFASKDKENIDISNEPFENNKAVSSESKDVDHRVLPFVEETPR 401
           D I  D+  +  L   S DK+   +SN P +  K+   + K+ D +V+ FV   P+
Sbjct: 47  DKISRDELPEKQLA-QSNDKDKHSVSNPPHKTLKSKRQKGKNNDRKVILFVGNLPK 101


>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +3

Query: 318 PFENNKAVSSESKDVDHRVLPFVEETPRLILSNTDGASLKRECDTDIRFLHPEP 479
           P+   ++VS+ S   D  + PF ++TP ++ S++D  +  R    D+ F  P P
Sbjct: 168 PYTPFRSVSTTSSSNDTSITPFGDQTP-ILSSSSDPYATHRVWSMDLPFEIPFP 220


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +3

Query: 201  VETSKELGISKDTIDIDQYTKDALKFASKDKENIDISNEP-FENNKAVSSESKDVD 365
            + T +   +S+    +D + ++ +KF+ K     D  +EP  + ++   S SKD+D
Sbjct: 1592 ISTIQRFPVSEWVSKLDTHVRNCIKFSHKQNLEEDFIHEPVIDVDEFAISSSKDID 1647


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 23/90 (25%), Positives = 43/90 (47%)
 Frame = +3

Query: 108 NSIQTDLPGKDVDMRVQHSISILQTEDINDRVETSKELGISKDTIDIDQYTKDALKFASK 287
           +S+ T++     +  V +   I Q ++  D  E S+EL +++D +   +     LK   +
Sbjct: 266 DSLSTEMEEDKSNKEVDYEYEIRQLQNRLD--ELSEELDVAQDLLTEKEDEIATLKRQIE 323

Query: 288 DKENIDISNEPFENNKAVSSESKDVDHRVL 377
           +KEN   S+  FEN +  S      D+ +L
Sbjct: 324 EKEN---SSSAFENEENSSYVHLQEDYAIL 350


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 19/82 (23%), Positives = 38/82 (46%)
 Frame = +3

Query: 6   INNSNDSQSNLLGSAAANKDLDLRVPPVIPVSSNNSIQTDLPGKDVDMRVQHSISILQTE 185
           +++ ND  ++LL      +D+D     V+    N + + D PG + + R          +
Sbjct: 439 LDDDNDV-NDLLDFETEREDIDDLTDEVMETEENEAAEADYPGVNRNTRQD------DVQ 491

Query: 186 DINDRVETSKELGISKDTIDID 251
           DI+   E+  E   S++T ++D
Sbjct: 492 DISMETESQNETDESQNTENVD 513


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 91  FPYLVIILSRLTFQEKT*TCVFNIQYQFCKPKILTIE 201
           +P+  I L  + F EKT + +  I + +  P I+T +
Sbjct: 89  YPFQSITLPLMPFLEKTESSILTISHVYSPPTIITFD 125


>SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase
           Gpd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 385

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 145 TCVFNIQYQFCKPKILTIELKPQK 216
           T V+NI Y+   PK L I L+P K
Sbjct: 350 TAVYNISYEDMDPKDLIIVLQPLK 373


>SPAC328.08c |||tubulin specific chaperone cofactor C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 255 YTKDALKFASKDKENIDISNEPFENNKAVSSESKDV 362
           +  D L  A+   +NI  +  P+ NNKAV   +K +
Sbjct: 116 FENDTLYLANLKNQNIGDNVIPYPNNKAVKVSAKSL 151


>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 297

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 20/74 (27%), Positives = 31/74 (41%)
 Frame = +3

Query: 261 KDALKFASKDKENIDISNEPFENNKAVSSESKDVDHRVLPFVEETPRLILSNTDGASLKR 440
           K + +  S + + ID++N P+E     S +   +D R        PR + S   G  L  
Sbjct: 165 KQSSREFSSNTQAIDVANTPYELLPDYSPDMSVLDKR------SHPRPLRSEWKGPPLDL 218

Query: 441 ECDTDIRFLHPEPL 482
             D +   LHP  L
Sbjct: 219 SNDENRHLLHPAEL 232


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 258 TKDALKFASKDKENIDISNEPFENNKAVSSESKDVDHRVLPFVEETP 398
           T   ++  SK +E I + ++  E + +VSS  K+ +H       ETP
Sbjct: 393 TPPKIEIESKIEEEISVVSKSKEISSSVSSVGKEQNHTEKQVAIETP 439


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -3

Query: 432 KTPRLYLTKLTLVSLPQTVTLC-DLHPLIRWIRLYCFRTVRLKYQ-CSPYLY*QILRHL 262
           ++  LYL  + +V +P  V    DL P +R I +   +T++ KY    P+LY  I   L
Sbjct: 127 ESKELYLKAVDVV-MPLLVKFSVDLRPKVRKISIQVLQTLKQKYDGLLPHLYPAIFDEL 184


>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 174 LQTEDINDRVETSKELG-ISKDTIDIDQYTKDALKFASKD 290
           LQ E+   + +   E+  + KD I++DQ TKD LK    D
Sbjct: 73  LQEEERERKDQYVPEVSELEKDKINVDQDTKDMLKALGYD 112


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/63 (23%), Positives = 29/63 (46%)
 Frame = +3

Query: 147 MRVQHSISILQTEDINDRVETSKELGISKDTIDIDQYTKDALKFASKDKENIDISNEPFE 326
           M+ ++  S L+ ++  D   T + L  SKD+++   +  +A          I  SN PF 
Sbjct: 1   MQSKYGRSSLKIKN-GDDTRTLRALSFSKDSVNSSSFDNEAASTTLGISTAIHASNRPFR 59

Query: 327 NNK 335
            ++
Sbjct: 60  QDE 62


>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
           beta subunit Tfg2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 267 ALKFASKD--KENIDISNEPFENNKAVSSESKDVDH 368
           ALK++ K   K  +D ++    N +A  SES  +DH
Sbjct: 243 ALKYSLKPEYKGTMDAASVELRNQQASQSESSSIDH 278


>SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 273

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +3

Query: 15  SNDSQSNLLGSAAANKDLDLRVPPVIPVSSNNSIQ-TDLPGKDVDMRVQHSISILQTED 188
           SND+++N   S      LDL+ P    +  N++ Q +D+  +     ++ S SIL T +
Sbjct: 101 SNDTENNETKSINGKSALDLKEPHHSELHDNDNFQNSDINIESFKGDIEASGSILTTHE 159


>SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase
           Ppk34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 444 CDTDIRFLHPEPLFKNPEKR 503
           C++D+R L    L KNPEKR
Sbjct: 300 CNSDLRKLLERCLEKNPEKR 319


>SPCC1795.03 |gms1||UDP-galactose transporter
           Gms1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -1

Query: 302 NVLLIFTSKF*GIFCILIDINCIFTYSQFF*GFNSIV 192
           NV L F S F  +F IL+        + FF G+NSIV
Sbjct: 219 NVQLSFFSLFPCLFTILMKDYHNIAENGFFFGYNSIV 255


>SPBC23E6.09 |ssn6||transcriptional corepressor
            Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
 Frame = +3

Query: 93   PVSSNNSIQTDLPGKDVDMRVQHSISILQTEDINDRV---ETSKELGISKDTIDIDQYTK 263
            P S+  + Q      D D+     +   +T D+ND V   E  + +    D+  +    K
Sbjct: 926  PKSTKRNHQETEKTADTDVSSTEPVKRQKTADVNDDVGEEEVKQSVSEQVDSAQLTSEPK 985

Query: 264  DALKFASKDKENIDISNE-PFENNKAVSSES 353
                  S ++++ D SN+   EN   ++ +S
Sbjct: 986  SESLPKSPEEKSDDTSNDVTTENTNDINGDS 1016


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,100,420
Number of Sequences: 5004
Number of extensions: 43084
Number of successful extensions: 158
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)