Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313E01f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0451 - 3237849-3238061,3238142-3238268,3238418-3238656,323... 38 0.004
05_03_0603 - 16117695-16118396,16118679-16118939,16120100-161201... 36 0.026
01_01_0568 - 4207812-4209587,4210056-4210291,4210647-4210793,421... 31 0.56
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 31 0.74
08_02_1149 + 24706429-24708105 29 3.0
06_03_1073 - 27373259-27373304,27373542-27373624,27373719-273743... 28 5.2
11_06_0613 - 25509044-25509118,25509256-25511275,25511632-25512467 27 6.9
03_06_0026 - 31118997-31119113,31119700-31119900,31120032-311202... 27 6.9
03_05_1136 + 30634685-30634919,30635008-30635303,30635398-306357... 27 6.9
02_03_0170 + 15935942-15936007,15936107-15936239,15936335-159364... 27 9.1
02_01_0331 + 2331774-2331985,2332825-2332952,2333392-2333452,233... 27 9.1
>02_01_0451 -
3237849-3238061,3238142-3238268,3238418-3238656,
3238937-3239151,3239569-3240031,3240562-3240715,
3241724-3241833,3242540-3242797,3242843-3242854,
3243492-3243545,3244202-3244312,3244390-3244545,
3244798-3245201,3245405-3245501,3246041-3246050,
3246097-3246164,3246652-3246762,3246874-3247074,
3247384-3247485,3247980-3248087,3248209-3248411,
3248563-3248680,3248774-3248854,3248958-3249500,
3249602-3249730
Length = 1428
Score = 38.3 bits (85), Expect = 0.004
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Frame = +3
Query: 183 EDINDRVETS---KELGISKDTIDIDQYTKDALKFASKDKENIDISNEPFENNKAVSSES 353
ED +D+V ++L ++T D+D+ L+ AS+ EN+DI + VS
Sbjct: 268 EDSDDKVPREDHVQQLVGDEETNDVDKQNISKLQNASETIENLDIEKQKGGAQGDVSEPQ 327
Query: 354 KDVDHRVLPFVEETPRLILSNTDGASLK 437
D+D +L V++T R + DG+ K
Sbjct: 328 SDLDQMLLSSVKDTSRDSSGSGDGSMAK 355
>05_03_0603 -
16117695-16118396,16118679-16118939,16120100-16120144,
16120362-16120453,16120568-16120706,16121027-16121063,
16121147-16121434,16122000-16122074,16122505-16122581,
16123092-16123256,16123387-16123543,16124558-16124733,
16124828-16124940,16125398-16125428,16126487-16126605,
16126696-16126789,16127384-16127458,16127548-16127666,
16127751-16127907,16129252-16129398
Length = 1022
Score = 35.5 bits (78), Expect = 0.026
Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 8/150 (5%)
Frame = +3
Query: 81 PPVIPVSSNNSIQTDLPGKDVDMRVQHSISILQTEDINDRVETSKELGISKDTIDIDQYT 260
P +PV S +++T L + V+ R+ ++S +Q +ND + + G +I+I++
Sbjct: 266 PSSLPVDSALALKTSLSDELVESRLASALSFVQKLQVNDTSDCVR--GPHLASIEIER-- 321
Query: 261 KDALKFASKDKENIDISNEPFENNKAVSSESKDVD-HRVLPFVEETPRL---ILSNTDGA 428
+ D++ I+ F +S + DV+ + + +ET L I + D +
Sbjct: 322 QRCRSGNPTDRKFIEALINYFHRFGHLSCAASDVEIYLHMLSSDETTELLDTISRSFDAS 381
Query: 429 SLKRE----CDTDIRFLHPEPLFKNPEKRH 506
SL + T +FL P LF NPE +H
Sbjct: 382 SLSVKGLGLAITTFKFLTPSSLFNNPELQH 411
>01_01_0568 -
4207812-4209587,4210056-4210291,4210647-4210793,
4211857-4212145
Length = 815
Score = 31.1 bits (67), Expect = 0.56
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +3
Query: 198 RVETSKELGISKDTI--DIDQYTKDALKFASKDKENIDISNEPFENNKAV 341
R + EL + KD + +D DAL +SKD+ENI N+ + KA+
Sbjct: 443 RESRNSELLLEKDNMIKQLDGKLSDALSDSSKDRENIAALNKELDATKAM 492
>02_05_0484 -
29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 30.7 bits (66), Expect = 0.74
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = +3
Query: 51 AANKDLDLRVPPVIPVSSNNSIQTDLPGKDVDMRVQHSISILQTEDINDRVETSKELGIS 230
A+ D D PV V+ N+ DLP + + S + +DI D V+ LG++
Sbjct: 812 ASQSDDDYEPTPVYQVAYNSFDAEDLPSESGAFENEES----ERQDIADDVQMESSLGVA 867
Query: 231 KDTIDI 248
+ +DI
Sbjct: 868 DNCVDI 873
>08_02_1149 + 24706429-24708105
Length = 558
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +3
Query: 300 IDISNEPFENNKAVSSESKDVDHRVLPFVEETPRLILSNTDGASLKRE 443
+DIS PF + ++++E KD LP ++ T R+ + T S KR+
Sbjct: 205 VDISGSPFNRSLSIANEVKDA---TLPPLKRTKRMDGTVTTHCSAKRK 249
>06_03_1073 -
27373259-27373304,27373542-27373624,27373719-27374397,
27374493-27374563,27374635-27374727,27375855-27375928,
27376016-27376073,27376212-27376349
Length = 413
Score = 27.9 bits (59), Expect = 5.2
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = +3
Query: 312 NEPFENNKAVSSESKDVDHR---VLPFVEETPRLILSNTDGASLKRECDTDIRFLHPEPL 482
N PF+N K+++ S D VL +TPR + ++ G+S KR T +F + P+
Sbjct: 180 NSPFQNIKSINDGSSDSPFHTPLVLRDDMQTPRTVYTSHKGSSGKR-VRTRKQFAY--PI 236
Query: 483 FKNPEKR 503
F+ E +
Sbjct: 237 FRPTENK 243
>11_06_0613 - 25509044-25509118,25509256-25511275,25511632-25512467
Length = 976
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/51 (27%), Positives = 31/51 (60%)
Frame = +3
Query: 150 RVQHSISILQTEDINDRVETSKELGISKDTIDIDQYTKDALKFASKDKENI 302
+++ +I+++ +EDIN V I + TID+ +DA+++ ++ EN+
Sbjct: 871 KLEFNINVVDSEDINFDVGLGNLASIEEVTIDL--LCEDAVEWEVEEVENV 919
>03_06_0026 -
31118997-31119113,31119700-31119900,31120032-31120218,
31120339-31120415,31120738-31120815,31120858-31120974,
31121047-31121175,31121327-31121479,31121589-31122044,
31122122-31122239,31122385-31122575,31123140-31123415,
31123524-31123700,31124040-31124141,31124227-31124459,
31125563-31125764
Length = 937
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +3
Query: 273 KFASKDKENIDISNEPFENNKAVSSESKDVDHRVLPFVEETPRL 404
K SK + N D ++ + V +E++D + + PFV+ P+L
Sbjct: 504 KTVSKVEINEDSEEVEVDSEEVVEAENEDSEDELDPFVKSDPKL 547
>03_05_1136 +
30634685-30634919,30635008-30635303,30635398-30635790,
30635856-30636348,30636422-30636918
Length = 637
Score = 27.5 bits (58), Expect = 6.9
Identities = 22/111 (19%), Positives = 45/111 (40%)
Frame = +3
Query: 114 IQTDLPGKDVDMRVQHSISILQTEDINDRVETSKELGISKDTIDIDQYTKDALKFASKDK 293
I D P D+ Q S ++ + IND V + + + + L DK
Sbjct: 346 IPYDYPEFVADLTTQVSNGSIKLDRINDAVSRILRVKFAMGLFE-NPLPDPRLAGELGDK 404
Query: 294 ENIDISNEPFENNKAVSSESKDVDHRVLPFVEETPRLILSNTDGASLKREC 446
E+ I+ E + + K + VLP ++ +++++ + +L +C
Sbjct: 405 EHRQIAREAVRRSLVLLKNGKHGEKPVLPLSKKADKILVAGSHAHNLGFQC 455
>02_03_0170 +
15935942-15936007,15936107-15936239,15936335-15936406,
15936746-15936790,15937265-15937366,15937461-15937629,
15937754-15937852,15938288-15938437,15940130-15940169,
15940632-15940689,15942454-15942542,15943297-15943395,
15943486-15943601,15943685-15943803,15944350-15944363
Length = 456
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 78 VPPVIPVSSNNSIQTDLPGKDVDMRVQHSISIL-QTEDINDRVETSKEL 221
+P + ++ N S+ G+DV QH+I +L + EDI D E ++ L
Sbjct: 187 LPLISHINHNFSVHAVHMGEDVMSVFQHAIKVLSRREDITDSREGAEAL 235
>02_01_0331 +
2331774-2331985,2332825-2332952,2333392-2333452,
2333878-2334035,2335001-2335083,2336364-2336468,
2336659-2336756,2337136-2337256,2337366-2337416,
2337987-2338179,2338277-2338845,2338964-2339017,
2339250-2339412,2340155-2340417,2340530-2340717,
2341875-2341945,2342021-2342309,2343962-2344027,
2344186-2344303,2344468-2344575,2344656-2344805,
2344892-2345065,2345161-2345232
Length = 1164
Score = 27.1 bits (57), Expect = 9.1
Identities = 23/97 (23%), Positives = 47/97 (48%)
Frame = +3
Query: 63 DLDLRVPPVIPVSSNNSIQTDLPGKDVDMRVQHSISILQTEDINDRVETSKELGISKDTI 242
DL + + + + S+ ++ D D + HS +LQ ++D++ S E +T+
Sbjct: 254 DLKISMDKLWILKEVGSMLYEIVQYDCDTEIMHSY-VLQEVSVSDQLFQSSE-----NTL 307
Query: 243 DIDQYTKDALKFASKDKENIDISNEPFENNKAVSSES 353
D +T D++ + K + ID+ + F N SS++
Sbjct: 308 DDLVWTADSIFSSKKIRSPIDLYDFWFNLNYKGSSQT 344
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,453,336
Number of Sequences: 37544
Number of extensions: 231825
Number of successful extensions: 614
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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