Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313E01f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.76 
SB_28815| Best HMM Match : Herpes_UL3 (HMM E-Value=2)                  30   1.0  
SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_8388| Best HMM Match : ig (HMM E-Value=8.80001e-41)                 29   3.1  
SB_29616| Best HMM Match : Orthopox_F14 (HMM E-Value=1.2)              29   3.1  
SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_14898| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_20662| Best HMM Match : bZIP_1 (HMM E-Value=0.89)                   28   4.1  
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_51803| Best HMM Match : Ion_trans_2 (HMM E-Value=2.3e-30)           28   5.4  
SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11)               28   5.4  
SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_59022| Best HMM Match : Pkinase_Tyr (HMM E-Value=2.4e-13)           27   9.4  
SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_26672| Best HMM Match : Exo_endo_phos (HMM E-Value=0.46)            27   9.4  
SB_57607| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_51116| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_16650| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2437

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
 Frame = +3

Query: 93   PVSSNNSIQTDLPGKDVDMRVQHSIS--ILQTEDINDRVETSKELGISKDTIDIDQYTKD 266
            P+  N+  + D  G   +  + H  S  ++QT   +DRV TS  L  S   +   Q  + 
Sbjct: 1524 PIDENSEERPD-SGVVTEKSLSHQASDPVIQTTKKHDRVTTSYSLPSSVQMLQNTQDGQK 1582

Query: 267  ALKFASKDKENIDISNEPFENNKAVSSESKD 359
            +     +D  +   S EP +     SS S D
Sbjct: 1583 SAGVVHRDSTSSTGSREPMQKKPVPSSISSD 1613


>SB_28815| Best HMM Match : Herpes_UL3 (HMM E-Value=2)
          Length = 183

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 20/69 (28%), Positives = 37/69 (53%)
 Frame = +3

Query: 123 DLPGKDVDMRVQHSISILQTEDINDRVETSKELGISKDTIDIDQYTKDALKFASKDKENI 302
           DL  KD+D +   S   L ++D++ +   SK+L    D+ D+D    D+    SKD ++ 
Sbjct: 69  DLDSKDLDSQNLDSKD-LDSQDLDSKDLDSKDL----DSQDLDSQDLDSQDLDSKDLDSK 123

Query: 303 DISNEPFEN 329
           D+ +E  ++
Sbjct: 124 DLDSEDLDS 132


>SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 941

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = +3

Query: 174 LQTEDINDRVETSKELGISKDTIDIDQYTKDALKFASKDKENID--ISNEPFEN-NKAVS 344
           +  ED  +  E        KDT D D   KD+ K + +D EN+D   + E  +N +  V 
Sbjct: 385 IDDEDEEETEEDQSGKEDKKDTKDEDMEKKDSRK-SGEDDENVDNKKAEEKLKNGDHLVK 443

Query: 345 SESKDVD 365
           +ESKD +
Sbjct: 444 TESKDAE 450


>SB_8388| Best HMM Match : ig (HMM E-Value=8.80001e-41)
          Length = 666

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = +3

Query: 177 QTEDINDRVETSKELGISKDTIDIDQYTKDALKFASKDKENIDISNEPFENNKAVSSESK 356
           Q EDI    + S   G  K T+   Q+TKD  +  S+ +  +D++N         S   +
Sbjct: 479 QGEDIQCACQVS---GFPKPTV---QWTKDGQQLTSQVRMTVDVNNTLTIRQAESSDSGR 532

Query: 357 DVDHRVL 377
           D+  RVL
Sbjct: 533 DLQSRVL 539


>SB_29616| Best HMM Match : Orthopox_F14 (HMM E-Value=1.2)
          Length = 171

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/74 (24%), Positives = 37/74 (50%)
 Frame = +3

Query: 30  SNLLGSAAANKDLDLRVPPVIPVSSNNSIQTDLPGKDVDMRVQHSISILQTEDINDRVET 209
           +N+L     + D+D+ V   + V  +  +  D+   DVDM +   + I   +D++  ++ 
Sbjct: 102 TNILTDVDIDVDMDIDVDIDVDVDVDVDMDIDV---DVDMDIDVDVDIDMDKDVDVDIDI 158

Query: 210 SKELGISKDTIDID 251
             +LG+  D  D+D
Sbjct: 159 DMDLGMDMDR-DMD 171


>SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3464

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +3

Query: 195 DRVETSKELGISKDTIDIDQYTKDALKFASKDK--ENIDISNEPFENNKAVSSESKDVDH 368
           +R E S  L  +KDT    +YT D  + +S++    +I    E   N +  S  S+DV  
Sbjct: 161 NRPELSPRLSEAKDTRHSLEYTSDGSRASSRNSTISSIQDKEESGLNGQFHSPPSRDVQT 220

Query: 369 RVLPFVEETPRLI 407
              P++ ++  ++
Sbjct: 221 ISPPYINDSDAIL 233


>SB_14898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 649

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/65 (24%), Positives = 30/65 (46%)
 Frame = +3

Query: 201 VETSKELGISKDTIDIDQYTKDALKFASKDKENIDISNEPFENNKAVSSESKDVDHRVLP 380
           V  +++ G+S + ++ D     A   +  DKE+++ + +P E  K   S  K+      P
Sbjct: 247 VAKAEKFGLSSEKLESDPNESSASVLSGDDKEDVEHNVKPSEVFKKFGSPQKEKPQGAKP 306

Query: 381 FVEET 395
              ET
Sbjct: 307 ANGET 311


>SB_20662| Best HMM Match : bZIP_1 (HMM E-Value=0.89)
          Length = 589

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 24/99 (24%), Positives = 49/99 (49%)
 Frame = +3

Query: 63  DLDLRVPPVIPVSSNNSIQTDLPGKDVDMRVQHSISILQTEDINDRVETSKELGISKDTI 242
           D+D R   +  +   NS    L GK ++   +   + L TED+N R + + +L   ++ +
Sbjct: 46  DVDQRNQEIARLEEENSYLRGLLGKSIEEAKKEPGTQLITEDLNRRKKENTKL---RELL 102

Query: 243 DIDQYTKDALKFASKDKENIDISNEPFENNKAVSSESKD 359
           +  Q  +DA K  S++ E+        E+ +++  +S+D
Sbjct: 103 NNAQ--EDAKKPVSENMESFKRIENENEHLRSLLKKSED 139


>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3760

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 24/99 (24%), Positives = 49/99 (49%)
 Frame = +3

Query: 63   DLDLRVPPVIPVSSNNSIQTDLPGKDVDMRVQHSISILQTEDINDRVETSKELGISKDTI 242
            D+D R   +  +   NS    L GK ++   +   + L TED+N R + + +L   ++ +
Sbjct: 3152 DVDQRNQEIARLEEENSYLRGLLGKSIEEAKKEPGTQLITEDLNRRKKENTKL---RELL 3208

Query: 243  DIDQYTKDALKFASKDKENIDISNEPFENNKAVSSESKD 359
            +  Q  +DA K  S++ E+        E+ +++  +S+D
Sbjct: 3209 NNAQ--EDAKKPVSENMESFKRIENENEHLRSLLKKSED 3245


>SB_51803| Best HMM Match : Ion_trans_2 (HMM E-Value=2.3e-30)
          Length = 823

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 344 QRIKGCRSQSVTVCGRDTKVNFVKYRRGVFKT 439
           QR++G    ++    + T VN +KY  G+FKT
Sbjct: 41  QRLRGSSESTIR---KKTHVNMIKYNYGIFKT 69


>SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11)
          Length = 1704

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/77 (20%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = +3

Query: 81   PPVIPVSSNNSIQTDLPG-KDVDMRVQHSISILQTEDINDRVETSKELGISKDTIDIDQY 257
            PPV  +S+   +++ +    D   + +   ++ Q ++   R   +  L  S   +   + 
Sbjct: 817  PPVSQISALAGLESQVKSYNDPQCQPRSPHTVSQPQEQGTRKAANFRLTSSSPVLSGQET 876

Query: 258  TKDALKFASKDKENIDI 308
             +DA + A+ D+ N+DI
Sbjct: 877  LRDASRLATNDRPNVDI 893


>SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2672

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 24/72 (33%), Positives = 36/72 (50%)
 Frame = +3

Query: 174 LQTEDINDRVETSKELGISKDTIDIDQYTKDALKFASKDKENIDISNEPFENNKAVSSES 353
           LQ+ + +  V+ SK L + ++    D    D L   S+  ENI +  E  EN+  V SE 
Sbjct: 129 LQSCEESIAVKESKVLALEQEIAVKD----DKLAQLSEYSENISLKLEKAENSLMVLSEE 184

Query: 354 KDVDHRVLPFVE 389
           K+   R+ P VE
Sbjct: 185 KE---RLAPLVE 193


>SB_59022| Best HMM Match : Pkinase_Tyr (HMM E-Value=2.4e-13)
          Length = 751

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +3

Query: 69  DLRVPPVIPVSSNNSIQTDLPGKDVDMRVQHSISILQTEDINDRVETSKELGISKD 236
           DLRV   + VS +  +  DL G   D+RV + + +     ++  +  S +LG+S D
Sbjct: 233 DLRVSYDLRVSYDLRVSYDL-GVSYDLRVSYDLRVSYDLAVSYDLRVSYDLGVSYD 287


>SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1293

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/67 (23%), Positives = 31/67 (46%)
 Frame = +3

Query: 156 QHSISILQTEDINDRVETSKELGISKDTIDIDQYTKDALKFASKDKENIDISNEPFENNK 335
           + S  ++ +++IN     +++LG+ +D I +   +      A KD  +    N   E N 
Sbjct: 233 ESSSKVMSSKEINKESSGTQDLGVKRDAI-VPSSSTIVNSSAIKDSSSASKENTSSEANT 291

Query: 336 AVSSESK 356
           + S  SK
Sbjct: 292 SKSLSSK 298


>SB_26672| Best HMM Match : Exo_endo_phos (HMM E-Value=0.46)
          Length = 1232

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +1

Query: 94  PYLVIILSRL--TFQEKT*TCVFNIQYQFCKPKILTIELKPQKN 219
           P LV++LSR+   FQE T T V    + FC     T+EL+  K+
Sbjct: 342 PPLVLLLSRMCTDFQESTITYVVCYTFAFC--IAFTLELRQTKS 383


>SB_57607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 301 LIFQTNRSKTIKPYPANQR 357
           +++   R +TI+P+P NQR
Sbjct: 251 VVYNLRRGRTIRPFPTNQR 269


>SB_51116| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 789

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +3

Query: 66  LDLRVPPVIPVSSNNSIQTDLPGKDVDMRVQHSISILQTEDINDRVETSKELGISKD-TI 242
           +D+ V   + V  + S+  D+   DVD+ V   I +  + D+N  V+   ++ +  D ++
Sbjct: 262 VDVPVDISVDVDVDVSVDVDV-SVDVDVSVDVDIGVDVSVDVNVSVDVDVDVSVDVDVSV 320

Query: 243 DID 251
           D+D
Sbjct: 321 DVD 323


>SB_16650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1264

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = +3

Query: 9   NNSNDSQSNLLGSAAANKDLDLRVPPVIPVSSNNSIQTDLPGKDVD---MRVQHSISIL 176
           NN++ S+  LL +       +L  PP  P    +S Q D+  +D+D   M+ QH   +L
Sbjct: 49  NNTSMSEDGLLANIKTEPVNNL-TPPYTPPDMMDSSQDDVMSEDIDAYLMQYQHQDPML 106


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,023,920
Number of Sequences: 59808
Number of extensions: 292352
Number of successful extensions: 724
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)