SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313E01f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61955-7|AAV58862.1|  456|Caenorhabditis elegans Hypothetical pr...    34   0.054
U61955-6|AAC24408.2|  505|Caenorhabditis elegans Hypothetical pr...    34   0.054
Z82282-9|CAB05281.2|  361|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AF067216-1|AAC17524.1|  301|Caenorhabditis elegans Hypothetical ...    29   1.5  
AF000196-6|ABC71844.1|  137|Caenorhabditis elegans Hypothetical ...    29   1.5  
AF000196-5|AAC24255.2|  140|Caenorhabditis elegans Hypothetical ...    29   1.5  
AC006672-6|AAK84541.2|  341|Caenorhabditis elegans Hypothetical ...    29   2.0  
EF584655-1|ABQ57413.1| 1187|Caenorhabditis elegans LAD-2 long is...    29   2.7  
AF456361-1|AAL60232.1| 1187|Caenorhabditis elegans immunoglobuli...    29   2.7  
AC024817-49|AAF59572.3| 1187|Caenorhabditis elegans L1 cam adhes...    29   2.7  
Z81051-8|CAB02869.1|  425|Caenorhabditis elegans Hypothetical pr...    28   3.5  
L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore nu...    28   3.5  
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p...    28   4.7  
AL132876-8|CAD21660.1|  829|Caenorhabditis elegans Hypothetical ...    28   4.7  
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp...    28   4.7  
AL033513-2|CAA22079.2|  439|Caenorhabditis elegans Hypothetical ...    27   6.2  
AL021446-4|CAA16267.2|  439|Caenorhabditis elegans Hypothetical ...    27   6.2  
Z81554-2|CAB04504.1|  259|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z70718-6|CAA94677.1| 1029|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z49129-1|CAA88962.1|  262|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U80952-5|AAB38092.1|  424|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U50301-12|AAB37053.2|  486|Caenorhabditis elegans Hypothetical p...    27   8.1  
U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly glu...    27   8.1  
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu...    27   8.1  
AF016684-13|AAB66203.1|  470|Caenorhabditis elegans Hypothetical...    27   8.1  

>U61955-7|AAV58862.1|  456|Caenorhabditis elegans Hypothetical
           protein M03D4.4b protein.
          Length = 456

 Score = 34.3 bits (75), Expect = 0.054
 Identities = 13/34 (38%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = +3

Query: 3   LINNSNDSQSNLLGSAAANKDLDLRVP-PVIPVS 101
           ++NN+N+++SN+L  +  +KD    +P P IP+S
Sbjct: 242 ILNNNNNNESNILNGSVMHKDAGFEIPAPTIPLS 275


>U61955-6|AAC24408.2|  505|Caenorhabditis elegans Hypothetical
           protein M03D4.4a protein.
          Length = 505

 Score = 34.3 bits (75), Expect = 0.054
 Identities = 13/34 (38%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = +3

Query: 3   LINNSNDSQSNLLGSAAANKDLDLRVP-PVIPVS 101
           ++NN+N+++SN+L  +  +KD    +P P IP+S
Sbjct: 291 ILNNNNNNESNILNGSVMHKDAGFEIPAPTIPLS 324


>Z82282-9|CAB05281.2|  361|Caenorhabditis elegans Hypothetical
           protein T07G12.12 protein.
          Length = 361

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 19/72 (26%), Positives = 34/72 (47%)
 Frame = +3

Query: 102 SNNSIQTDLPGKDVDMRVQHSISILQTEDINDRVETSKELGISKDTIDIDQYTKDALKFA 281
           SNNS++  +     D+   H+ +I   +DIN  + +S +    +D +D D    D  ++ 
Sbjct: 114 SNNSVEKVMDMIIEDVVSNHTTNIADGDDINSPIVSSGQSEFLQDGVDNDGNIDDYEEYQ 173

Query: 282 SKDKENIDISNE 317
           S    +  I NE
Sbjct: 174 SLPPNDDVIMNE 185


>AF067216-1|AAC17524.1|  301|Caenorhabditis elegans Hypothetical
           protein C35E7.9 protein.
          Length = 301

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 28/113 (24%), Positives = 46/113 (40%)
 Frame = +3

Query: 21  DSQSNLLGSAAANKDLDLRVPPVIPVSSNNSIQTDLPGKDVDMRVQHSISILQTEDINDR 200
           D +S+   +AA   D  ++ PPV  V S  S + + P K+ + + +      +    +++
Sbjct: 28  DGKSSTASAAAPKADSKMK-PPVENVKSKKSEKKEEPKKEEEPKKEEEKK--EKSKKSEK 84

Query: 201 VETSKELGISKDTIDIDQYTKDALKFASKDKENIDISNEPFENNKAVSSESKD 359
            +  KE    +D  D     KD  K   KD +  D   E  E  K    E  D
Sbjct: 85  KDDKKEEAKKED--DKKDEKKDEKKEDKKDDKKDDKKEEKKEEKKEDEKEKGD 135


>AF000196-6|ABC71844.1|  137|Caenorhabditis elegans Hypothetical
           protein B0041.6b protein.
          Length = 137

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 21/75 (28%), Positives = 38/75 (50%)
 Frame = +3

Query: 189 INDRVETSKELGISKDTIDIDQYTKDALKFASKDKENIDISNEPFENNKAVSSESKDVDH 368
           + D  +  KE+ +  DT+D     KD   F +    + +++   FE  K+V S +  V +
Sbjct: 62  VYDLAKLKKEMSLVLDTVDHRNLDKDVEFFKTTVSTSENVAIYMFEKLKSVMS-NPSVLY 120

Query: 369 RVLPFVEETPRLILS 413
           +V   +EETP+ I +
Sbjct: 121 KVT--IEETPKNIFT 133


>AF000196-5|AAC24255.2|  140|Caenorhabditis elegans Hypothetical
           protein B0041.6a protein.
          Length = 140

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 21/75 (28%), Positives = 38/75 (50%)
 Frame = +3

Query: 189 INDRVETSKELGISKDTIDIDQYTKDALKFASKDKENIDISNEPFENNKAVSSESKDVDH 368
           + D  +  KE+ +  DT+D     KD   F +    + +++   FE  K+V S +  V +
Sbjct: 65  VYDLAKLKKEMSLVLDTVDHRNLDKDVEFFKTTVSTSENVAIYMFEKLKSVMS-NPSVLY 123

Query: 369 RVLPFVEETPRLILS 413
           +V   +EETP+ I +
Sbjct: 124 KVT--IEETPKNIFT 136


>AC006672-6|AAK84541.2|  341|Caenorhabditis elegans Hypothetical
           protein K08D12.2 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 348 ESKDVDHRVLPFVEETPRLILSNTDGASLKRECDTD 455
           E+  VD +++PF  +  R+IL    G     ECD +
Sbjct: 281 ETSTVDSKLVPFAGQAERMILFQLKGNLANLECDVE 316


>EF584655-1|ABQ57413.1| 1187|Caenorhabditis elegans LAD-2 long
           isoform protein.
          Length = 1187

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 23/87 (26%), Positives = 40/87 (45%)
 Frame = +3

Query: 171 ILQTEDINDRVETSKELGISKDTIDIDQYTKDALKFASKDKENIDISNEPFENNKAVSSE 350
           +++T   ++R  T K +  S     I +Y  +   F    K   ++ NE    NK    E
Sbjct: 616 VVETAHCSERKATVKWVAASDHGDSIKKYIVEM--FTDFKKNEWEVINEEVNVNK----E 669

Query: 351 SKDVDHRVLPFVEETPRLILSNTDGAS 431
           + +VD  + P+V  T R++  N+ G S
Sbjct: 670 TFEVDITLTPWVNYTFRVVAVNSHGRS 696


>AF456361-1|AAL60232.1| 1187|Caenorhabditis elegans immunoglobulin
           domain-containingprotein Y54G2A.25 protein.
          Length = 1187

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 23/87 (26%), Positives = 40/87 (45%)
 Frame = +3

Query: 171 ILQTEDINDRVETSKELGISKDTIDIDQYTKDALKFASKDKENIDISNEPFENNKAVSSE 350
           +++T   ++R  T K +  S     I +Y  +   F    K   ++ NE    NK    E
Sbjct: 616 VVETAHCSERKATVKWVAASDHGDSIKKYIVEM--FTDFKKNEWEVINEEVNVNK----E 669

Query: 351 SKDVDHRVLPFVEETPRLILSNTDGAS 431
           + +VD  + P+V  T R++  N+ G S
Sbjct: 670 TFEVDITLTPWVNYTFRVVAVNSHGRS 696


>AC024817-49|AAF59572.3| 1187|Caenorhabditis elegans L1 cam adhesion
           molecule homologprotein 2, isoform a protein.
          Length = 1187

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 23/87 (26%), Positives = 40/87 (45%)
 Frame = +3

Query: 171 ILQTEDINDRVETSKELGISKDTIDIDQYTKDALKFASKDKENIDISNEPFENNKAVSSE 350
           +++T   ++R  T K +  S     I +Y  +   F    K   ++ NE    NK    E
Sbjct: 616 VVETAHCSERKATVKWVAASDHGDSIKKYIVEM--FTDFKKNEWEVINEEVNVNK----E 669

Query: 351 SKDVDHRVLPFVEETPRLILSNTDGAS 431
           + +VD  + P+V  T R++  N+ G S
Sbjct: 670 TFEVDITLTPWVNYTFRVVAVNSHGRS 696


>Z81051-8|CAB02869.1|  425|Caenorhabditis elegans Hypothetical
           protein C55A6.9 protein.
          Length = 425

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/70 (21%), Positives = 38/70 (54%)
 Frame = +3

Query: 186 DINDRVETSKELGISKDTIDIDQYTKDALKFASKDKENIDISNEPFENNKAVSSESKDVD 365
           D    V    ++G++ D ID+ +Y +D ++    +K+NI + ++     K ++  S+   
Sbjct: 60  DYKHAVICDDDMGLNVDLIDLKKYDEDPIETEIDEKDNILLEDDGAA--KLIAKRSQQ-H 116

Query: 366 HRVLPFVEET 395
            +++P++ +T
Sbjct: 117 SKLVPWMRKT 126


>L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore null
           protein 1 protein.
          Length = 1010

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
 Frame = +3

Query: 141 VDMRVQHSISILQTEDINDRVETSK--ELGISKDTIDIDQYTKDALKFASKDKENIDISN 314
           VDM +    ++L  E  ND+ ETS+  ++ I K  ++      ++ K  SK   +++ + 
Sbjct: 321 VDMDITDQ-AVLNAEKKNDQFETSQLMDISIPKVLVNDTMAMFNSPKHVSKSSMDLEKTI 379

Query: 315 EPFENN---KAVSSESKDVDHRVLPFVEETP-RLILSNTDGASLKRECDTDIRFLHPEP 479
           E  + +    +++ E +D+D   +   E+ P        DG  L++E   DI  +   P
Sbjct: 380 EAADKSTKYPSIADEVEDLD-MDMDITEQQPCEAGNQQNDGLQLQKEDLMDISVIRDSP 437


>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical protein
            K08F8.6 protein.
          Length = 2862

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = +3

Query: 165  ISILQTEDINDRVETSKELGISKDTIDIDQYTKDALKFASKDKENIDISNEPFENNKAVS 344
            + I++  D  D  E  K+LG+   +    + T     F S+D  +I+I N+P  +   +S
Sbjct: 2686 LDIMEGLDDGD-TEIMKDLGLETPSSAAIRQTGGPSMFFSEDSSSIEIQNQPLASGYYIS 2744

Query: 345  S 347
            +
Sbjct: 2745 T 2745


>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
            protein K08F8.6 protein.
          Length = 2862

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = +3

Query: 165  ISILQTEDINDRVETSKELGISKDTIDIDQYTKDALKFASKDKENIDISNEPFENNKAVS 344
            + I++  D  D  E  K+LG+   +    + T     F S+D  +I+I N+P  +   +S
Sbjct: 2686 LDIMEGLDDGD-TEIMKDLGLETPSSAAIRQTGGPSMFFSEDSSSIEIQNQPLASGYYIS 2744

Query: 345  S 347
            +
Sbjct: 2745 T 2745


>AL132876-8|CAD21660.1|  829|Caenorhabditis elegans Hypothetical
           protein Y105E8A.9 protein.
          Length = 829

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 9   NNSNDSQSNLLGSAAANKDLDLRVPPVIPVSSNNSIQTDLPG 134
           N SND  S+LLG    +     + PP  P  ++NS   D+ G
Sbjct: 651 NPSNDYSSDLLGVGVGSGAASAQAPPPPPPPTSNSNILDIFG 692


>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
            subunit Med13 protein.
          Length = 2862

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = +3

Query: 165  ISILQTEDINDRVETSKELGISKDTIDIDQYTKDALKFASKDKENIDISNEPFENNKAVS 344
            + I++  D  D  E  K+LG+   +    + T     F S+D  +I+I N+P  +   +S
Sbjct: 2686 LDIMEGLDDGD-TEIMKDLGLETPSSAAIRQTGGPSMFFSEDSSSIEIQNQPLASGYYIS 2744

Query: 345  S 347
            +
Sbjct: 2745 T 2745


>AL033513-2|CAA22079.2|  439|Caenorhabditis elegans Hypothetical
           protein Y70D2A.1 protein.
          Length = 439

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = -3

Query: 462 ILCLYHTLVLKTPRLYLTKLTLVSLPQTVTLCDLHPLIRWI 340
           ++ L H L+ K+  +Y T LTL+++   +T   + P+I W+
Sbjct: 59  VVTLTHPLLRKSSIIY-TYLTLLAMTDLLTQFSVIPMIMWL 98


>AL021446-4|CAA16267.2|  439|Caenorhabditis elegans Hypothetical
           protein Y70D2A.1 protein.
          Length = 439

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = -3

Query: 462 ILCLYHTLVLKTPRLYLTKLTLVSLPQTVTLCDLHPLIRWI 340
           ++ L H L+ K+  +Y T LTL+++   +T   + P+I W+
Sbjct: 59  VVTLTHPLLRKSSIIY-TYLTLLAMTDLLTQFSVIPMIMWL 98


>Z81554-2|CAB04504.1|  259|Caenorhabditis elegans Hypothetical
           protein F57G4.5 protein.
          Length = 259

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 22/107 (20%), Positives = 43/107 (40%)
 Frame = +3

Query: 102 SNNSIQTDLPGKDVDMRVQHSISILQTEDINDRVETSKELGISKDTIDIDQYTKDALKFA 281
           ++ S+Q  +   D +     S S LQT    +     K+  + K+  + D       ++ 
Sbjct: 96  NSRSMQDYMCRADSESISTSSSSALQTNKFPEDSSHRKDYSLPKNLYNQDDSLLHDFEYP 155

Query: 282 SKDKENIDISNEPFENNKAVSSESKDVDHRVLPFVEETPRLILSNTD 422
            + K+         EN++  S    + D +  P  + TP++ LS  D
Sbjct: 156 ERHKKVTSTRRIDSENSRQGSPIIFEEDIQECPLTKRTPKIHLSKGD 202


>Z70718-6|CAA94677.1| 1029|Caenorhabditis elegans Hypothetical
           protein C04G2.6 protein.
          Length = 1029

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 243 DIDQYTKDALKFASKDKENIDISNEP 320
           D+++Y K A    ++D+EN D ++EP
Sbjct: 314 DVEEYVKTADDMGNEDEENDDENDEP 339


>Z49129-1|CAA88962.1|  262|Caenorhabditis elegans Hypothetical
           protein T05B9.1 protein.
          Length = 262

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
 Frame = +3

Query: 276 FASKDKENIDISNEPFENNK-AVSSESKDV--DHRVLPFVE---ETPRLILSNTDGASLK 437
           F + +KE  D+    ++NN  A  +   DV  + R  P V+   E P L        S  
Sbjct: 88  FEAHEKEIADLKARQYQNNSIAAQTPPPDVRQELRSFPMVKHSRENPELRNVPVLIFSRC 147

Query: 438 RECDTDIRFLHPEPLFKNPEKRH 506
             C+TD   +H  P++    KR+
Sbjct: 148 MLCETDEHTIHSCPIYNTNSKRY 170


>U80952-5|AAB38092.1|  424|Caenorhabditis elegans Hypothetical
           protein F54H5.2 protein.
          Length = 424

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 22/114 (19%), Positives = 47/114 (41%)
 Frame = +3

Query: 42  GSAAANKDLDLRVPPVIPVSSNNSIQTDLPGKDVDMRVQHSISILQTEDINDRVETSKEL 221
           G  + N   D  +P   P S + +   +   K+   +     ++ + +   + ++T+++ 
Sbjct: 304 GKFSWNDPFDWEMPISTPPSKSITKSPNQLSKETIKKASREKTLSKEKTSKEDIKTAQKT 363

Query: 222 GISKDTIDIDQYTKDALKFASKDKENIDISNEPFENNKAVSSESKDVDHRVLPF 383
            I KD  +     K + + ASK+K ++          K      K+   R+LPF
Sbjct: 364 SIEKDVKE-----KLSKEMASKEKISLSAEKINMSAEKIEEDNKKEEYMRMLPF 412


>U50301-12|AAB37053.2|  486|Caenorhabditis elegans Hypothetical
           protein F20D6.10 protein.
          Length = 486

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 11/81 (13%)
 Frame = +3

Query: 192 NDRVETSKELGISKDTIDIDQYT-----------KDALKFASKDKENIDISNEPFENNKA 338
           N  VE  K   + KDT+++ +             +D +K  S  K N  ++     + + 
Sbjct: 263 NTDVEAGKRESVKKDTVELARIESLETPPLSPIPEDEIKEPSPSKTNQKLNRSNSRSEER 322

Query: 339 VSSESKDVDHRVLPFVEETPR 401
             S +  V HRV   + ETP+
Sbjct: 323 RGSTNSTVSHRVNRGLSETPK 343


>U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly
            glutamine tract) toxicityenhancer protein 1, isoform a
            protein.
          Length = 1081

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 23/93 (24%), Positives = 43/93 (46%)
 Frame = +3

Query: 90   IPVSSNNSIQTDLPGKDVDMRVQHSISILQTEDINDRVETSKELGISKDTIDIDQYTKDA 269
            + ++  ++ ++D PG   +     +++  +T++ N  VET  E    +D I I +  K  
Sbjct: 746  VQIAQVSTSESDAPGTS-EAAATETMTSPKTKN-NVIVETEGEQEEDEDEIPIKKSKKRR 803

Query: 270  LKFASKDKENIDISNEPFENNKAVSSESKDVDH 368
             K  S D+E      EP  + K  S E ++  H
Sbjct: 804  AKIVSNDEE-----EEPVRHPKRRSDEKREKRH 831


>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
            glutamine tract) toxicityenhancer protein 1, isoform b
            protein.
          Length = 1647

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 23/93 (24%), Positives = 43/93 (46%)
 Frame = +3

Query: 90   IPVSSNNSIQTDLPGKDVDMRVQHSISILQTEDINDRVETSKELGISKDTIDIDQYTKDA 269
            + ++  ++ ++D PG   +     +++  +T++ N  VET  E    +D I I +  K  
Sbjct: 746  VQIAQVSTSESDAPGTS-EAAATETMTSPKTKN-NVIVETEGEQEEDEDEIPIKKSKKRR 803

Query: 270  LKFASKDKENIDISNEPFENNKAVSSESKDVDH 368
             K  S D+E      EP  + K  S E ++  H
Sbjct: 804  AKIVSNDEE-----EEPVRHPKRRSDEKREKRH 831


>AF016684-13|AAB66203.1|  470|Caenorhabditis elegans Hypothetical
           protein F45C12.3 protein.
          Length = 470

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 30/114 (26%), Positives = 52/114 (45%)
 Frame = +3

Query: 174 LQTEDINDRVETSKELGISKDTIDIDQYTKDALKFASKDKENIDISNEPFENNKAVSSES 353
           L+T+D N++ E +KE+    + + +++  K  L+  S+ KE  +++     N   V S+ 
Sbjct: 334 LETQDDNEKFEETKEIKTPMEPVKLEETEK--LEKPSELKEFNELAQ---LNELKVLSQP 388

Query: 354 KDVDHRVLPFVEETPRLILSNTDGASLKRECDTDIRFLHPEPLFKNPEKRHRRS 515
           K  +    P   E  +    N D  S+K E   D+        F NP K +R S
Sbjct: 389 KRSEKPEKPNEYERSK----NLDDGSIKLEEHEDLEEDKELKEFVNPGKFNRPS 438


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,330,219
Number of Sequences: 27780
Number of extensions: 227795
Number of successful extensions: 618
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -