BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS313E01f (521 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g29760.1 68414.m03639 expressed protein 32 0.20 At1g19010.2 68414.m02366 expressed protein 32 0.27 At1g19010.1 68414.m02365 expressed protein 32 0.27 At3g15950.1 68416.m02017 DNA topoisomerase-related similar to DN... 31 0.62 At5g63330.1 68418.m07948 DNA-binding bromodomain-containing prot... 30 1.1 At2g36400.1 68415.m04467 expressed protein nearly identical to t... 30 1.1 At1g80230.1 68414.m09389 cytochrome c oxidase family protein con... 30 1.1 At5g14430.2 68418.m01689 dehydration-responsive protein-related ... 29 1.4 At5g14430.1 68418.m01688 dehydration-responsive protein-related ... 29 1.4 At1g01920.1 68414.m00110 SET domain-containing protein low simil... 29 1.9 At5g60720.1 68418.m07619 expressed protein contains Pfam profile... 29 2.5 At5g16630.1 68418.m01947 DNA repair protein Rad4 family low simi... 28 3.3 At4g23515.1 68417.m03389 Toll-Interleukin-Resistance (TIR) domai... 28 3.3 At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger) fa... 28 3.3 At4g34430.4 68417.m04893 DNA-binding family protein contains Pfa... 28 4.4 At4g34430.3 68417.m04892 DNA-binding family protein contains Pfa... 28 4.4 At4g34430.2 68417.m04891 DNA-binding family protein contains Pfa... 28 4.4 At4g34430.1 68417.m04890 DNA-binding family protein contains Pfa... 28 4.4 At4g24200.1 68417.m03474 expressed protein hypothetical protein ... 27 5.8 At2g42600.2 68415.m05272 phosphoenolpyruvate carboxylase, putati... 27 5.8 At2g42600.1 68415.m05271 phosphoenolpyruvate carboxylase, putati... 27 5.8 At5g15840.1 68418.m01853 zinc finger protein CONSTANS (CO) ident... 27 7.7 At4g40060.1 68417.m05672 homeobox-leucine zipper protein 16 (HB-... 27 7.7 At3g14490.1 68416.m01835 terpene synthase/cyclase family protein... 27 7.7 >At1g29760.1 68414.m03639 expressed protein Length = 526 Score = 32.3 bits (70), Expect = 0.20 Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 6/106 (5%) Frame = +3 Query: 123 DLPGKDVDMRVQHSISILQTEDINDRVETSKELGISKDTIDIDQYTKDALKFASKDKENI 302 DL D++ S + + VE + EL DT D+ + TKD+ I Sbjct: 55 DLISSDIETEPSSSSDGFDVGEKSSYVEKNAELRGDIDTSDVIESTKDS----------I 104 Query: 303 DISNEPFENNKAVSSESKDVD------HRVLPFVEETPRLILSNTD 422 D+S+E + +SS D+D +RV PF EE+ +S+ D Sbjct: 105 DLSSEKENDLDVISSSGNDMDVIDSGRNRVDPFQEESTVTTVSSDD 150 >At1g19010.2 68414.m02366 expressed protein Length = 290 Score = 31.9 bits (69), Expect = 0.27 Identities = 20/56 (35%), Positives = 26/56 (46%) Frame = +3 Query: 198 RVETSKELGISKDTIDIDQYTKDALKFASKDKENIDISNEPFENNKAVSSESKDVD 365 R E +KE I T + K +KF+ K K N D SN P E + S + D D Sbjct: 179 RKEEAKENDIELSTTPLSPSEKQCIKFSYKRKHNKDGSNSP-EGGGSSSQDDDDDD 233 >At1g19010.1 68414.m02365 expressed protein Length = 319 Score = 31.9 bits (69), Expect = 0.27 Identities = 20/56 (35%), Positives = 26/56 (46%) Frame = +3 Query: 198 RVETSKELGISKDTIDIDQYTKDALKFASKDKENIDISNEPFENNKAVSSESKDVD 365 R E +KE I T + K +KF+ K K N D SN P E + S + D D Sbjct: 208 RKEEAKENDIELSTTPLSPSEKQCIKFSYKRKHNKDGSNSP-EGGGSSSQDDDDDD 262 >At3g15950.1 68416.m02017 DNA topoisomerase-related similar to DNA topoisomerase IV subunit A (GI:26454107) [Mycoplasma penetrans] Length = 772 Score = 30.7 bits (66), Expect = 0.62 Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 3/108 (2%) Frame = +3 Query: 141 VDMRVQHSISILQTEDINDRVETS--KELGIS-KDTIDIDQYTKDALKFASKDKENIDIS 311 ++ Q S++ LQ + D+ ETS K +S +TI + + AL+ KE++D S Sbjct: 38 IEHEYQTSVNSLQGNEAVDQTETSGQKNSTVSDNNTISLSLSEEPALETL---KESVDTS 94 Query: 312 NEPFENNKAVSSESKDVDHRVLPFVEETPRLILSNTDGASLKRECDTD 455 E V S +DH L F L + +DG + E D Sbjct: 95 AELGAVTDEVDKPSSMLDHIELEFEAHINELKEAGSDGINKVEESKDD 142 >At5g63330.1 68418.m07948 DNA-binding bromodomain-containing protein contains bromodomain, INTERPRO:IPR001487 Length = 477 Score = 29.9 bits (64), Expect = 1.1 Identities = 12/37 (32%), Positives = 24/37 (64%) Frame = +3 Query: 42 GSAAANKDLDLRVPPVIPVSSNNSIQTDLPGKDVDMR 152 G + K + + PPVIP++S+ S+++++P + MR Sbjct: 258 GWKSIEKKIPMSKPPVIPLTSSASLESEIPFEVAPMR 294 >At2g36400.1 68415.m04467 expressed protein nearly identical to transcription activator GRL3 [Arabidopsis thaliana] GI:21539884 (unpublished); supporting cDNA gi|21539883|gb|AY102636.1| Length = 398 Score = 29.9 bits (64), Expect = 1.1 Identities = 14/49 (28%), Positives = 24/49 (48%) Frame = +3 Query: 285 KDKENIDISNEPFENNKAVSSESKDVDHRVLPFVEETPRLILSNTDGAS 431 K + N + P+E++ S+ D H + PF ++ PR L D +S Sbjct: 259 KQESNNMNNKRPYESHIGFSNNRSDGGHILRPFFDDWPRSSLQEADNSS 307 >At1g80230.1 68414.m09389 cytochrome c oxidase family protein contains Pfam domain, PF01215: Cytochrome c oxidase subunit Vb Length = 171 Score = 29.9 bits (64), Expect = 1.1 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 3/42 (7%) Frame = +3 Query: 30 SNLLGSAAANKDLDLRVPPVIPVSSNN---SIQTDLPGKDVD 146 S L+GSAAA+ + RV V+P+++ + +Q +L G+ +D Sbjct: 51 SRLIGSAAADTAVKKRVEDVMPIATGHEKEELQAELEGRKLD 92 >At5g14430.2 68418.m01689 dehydration-responsive protein-related similar to early-responsive to dehydration stress ERD3 protein [Arabidopsis thaliana] GI:15320410; contains Pfam profile PF03141: Putative methyltransferase Length = 612 Score = 29.5 bits (63), Expect = 1.4 Identities = 17/34 (50%), Positives = 20/34 (58%) Frame = +3 Query: 6 INNSNDSQSNLLGSAAANKDLDLRVPPVIPVSSN 107 I N D SNL G AAA D D+ V V+PV S+ Sbjct: 456 IRNVMDMSSNLGGFAAALNDKDVWVMNVMPVQSS 489 >At5g14430.1 68418.m01688 dehydration-responsive protein-related similar to early-responsive to dehydration stress ERD3 protein [Arabidopsis thaliana] GI:15320410; contains Pfam profile PF03141: Putative methyltransferase Length = 612 Score = 29.5 bits (63), Expect = 1.4 Identities = 17/34 (50%), Positives = 20/34 (58%) Frame = +3 Query: 6 INNSNDSQSNLLGSAAANKDLDLRVPPVIPVSSN 107 I N D SNL G AAA D D+ V V+PV S+ Sbjct: 456 IRNVMDMSSNLGGFAAALNDKDVWVMNVMPVQSS 489 >At1g01920.1 68414.m00110 SET domain-containing protein low similarity to SP|Q43088 Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N- methyltransferase, chloroplast precursor (EC 2.1.1.127) {Pisum sativum}; contains Pfam profile PF00856: SET domain Length = 572 Score = 29.1 bits (62), Expect = 1.9 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = -1 Query: 134 SWKVSLDRIITRYGNYRWYS 75 SWK LD + TR+GN W+S Sbjct: 106 SWKPYLDMLPTRFGNPLWFS 125 >At5g60720.1 68418.m07619 expressed protein contains Pfam profile PF04784: Protein of unknown function, DUF547 Length = 691 Score = 28.7 bits (61), Expect = 2.5 Identities = 14/56 (25%), Positives = 27/56 (48%) Frame = +3 Query: 120 TDLPGKDVDMRVQHSISILQTEDINDRVETSKELGISKDTIDIDQYTKDALKFASK 287 T LPG V HS+ + + E KE+ + ++ +D ++ T++ L+ K Sbjct: 50 TTLPGSISPFNVPHSVRTKKPNGQQKKEEIEKEVWMLREMLDQEEKTREILEQVQK 105 >At5g16630.1 68418.m01947 DNA repair protein Rad4 family low similarity to SP|Q01831 DNA-repair protein complementing XP-C cells (Xeroderma pigmentosum group C complementing protein) {Homo sapiens}; contains Pfam profile PF03835: DNA repair protein Rad4 Length = 865 Score = 28.3 bits (60), Expect = 3.3 Identities = 12/23 (52%), Positives = 17/23 (73%) Frame = -3 Query: 405 LTLVSLPQTVTLCDLHPLIRWIR 337 LT VS + VT+ D+ PL+RW+R Sbjct: 176 LTKVSNLEKVTVKDIAPLLRWVR 198 >At4g23515.1 68417.m03389 Toll-Interleukin-Resistance (TIR) domain-containing protein contains Pfam profile PF01582: TIR domain Length = 331 Score = 28.3 bits (60), Expect = 3.3 Identities = 23/77 (29%), Positives = 34/77 (44%) Frame = +3 Query: 108 NSIQTDLPGKDVDMRVQHSISILQTEDINDRVETSKELGISKDTIDIDQYTKDALKFASK 287 NS + K V+ ++H SI E N +ETS+ + + I L SK Sbjct: 164 NSPELAFVEKVVEKIIRHLASIAAEEGRNSTLETSETPPVIQPNQIIYNVINIRL-HRSK 222 Query: 288 DKENIDISNEPFENNKA 338 EN +S P E+NK+ Sbjct: 223 SLENFKLSYNPEEDNKS 239 >At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger) family protein contains Pfam profiles: PF00097 zinc finger, C3HC4 type (RING finger), PF01697 Domain of unknown function Length = 913 Score = 28.3 bits (60), Expect = 3.3 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Frame = +3 Query: 198 RVETSKELGISKDTIDIDQYTK-DALKFASKDKENIDISNEPFENNKAVSSESKDVDHRV 374 R + K+ + ID+D+ + + K A K K+ ++ E E K E DH V Sbjct: 652 RNQRVKQSLVPLPVIDLDKVIRHEEEKSAEKKKKKREMETETKEEKKIDKDEKSLSDHVV 711 Query: 375 LPFVEE 392 LP +++ Sbjct: 712 LPCIDK 717 >At4g34430.4 68417.m04893 DNA-binding family protein contains Pfam domains PF04433: SWIRM domain, PF00249: Myb-like DNA-binding domain and PF00569: Zinc finger, ZZ type Length = 986 Score = 27.9 bits (59), Expect = 4.4 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 6/92 (6%) Frame = +3 Query: 102 SNNSIQTDLPGKDVDMRVQHSISI-----LQTEDINDRVETSKELGISKD-TIDIDQYTK 263 S NS ++P D Q S+S +TE+ +++ +E SK T D + Sbjct: 634 SLNSDDREMPDTDTGKETQDSVSEEKQPGSRTENSTTKLDAVQEKRSSKPVTTDNSEKPV 693 Query: 264 DALKFASKDKENIDISNEPFENNKAVSSESKD 359 D + S+DK + EP ++ +SSE+KD Sbjct: 694 DII-CPSQDKCSGKELQEPLKDGNKLSSENKD 724 >At4g34430.3 68417.m04892 DNA-binding family protein contains Pfam domains PF04433: SWIRM domain, PF00249: Myb-like DNA-binding domain and PF00569: Zinc finger, ZZ type Length = 983 Score = 27.9 bits (59), Expect = 4.4 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 6/92 (6%) Frame = +3 Query: 102 SNNSIQTDLPGKDVDMRVQHSISI-----LQTEDINDRVETSKELGISKD-TIDIDQYTK 263 S NS ++P D Q S+S +TE+ +++ +E SK T D + Sbjct: 632 SLNSDDREMPDTDTGKETQDSVSEEKQPGSRTENSTTKLDAVQEKRSSKPVTTDNSEKPV 691 Query: 264 DALKFASKDKENIDISNEPFENNKAVSSESKD 359 D + S+DK + EP ++ +SSE+KD Sbjct: 692 DII-CPSQDKCSGKELQEPLKDGNKLSSENKD 722 >At4g34430.2 68417.m04891 DNA-binding family protein contains Pfam domains PF04433: SWIRM domain, PF00249: Myb-like DNA-binding domain and PF00569: Zinc finger, ZZ type Length = 985 Score = 27.9 bits (59), Expect = 4.4 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 6/92 (6%) Frame = +3 Query: 102 SNNSIQTDLPGKDVDMRVQHSISI-----LQTEDINDRVETSKELGISKD-TIDIDQYTK 263 S NS ++P D Q S+S +TE+ +++ +E SK T D + Sbjct: 634 SLNSDDREMPDTDTGKETQDSVSEEKQPGSRTENSTTKLDAVQEKRSSKPVTTDNSEKPV 693 Query: 264 DALKFASKDKENIDISNEPFENNKAVSSESKD 359 D + S+DK + EP ++ +SSE+KD Sbjct: 694 DII-CPSQDKCSGKELQEPLKDGNKLSSENKD 724 >At4g34430.1 68417.m04890 DNA-binding family protein contains Pfam domains PF04433: SWIRM domain, PF00249: Myb-like DNA-binding domain and PF00569: Zinc finger, ZZ type Length = 985 Score = 27.9 bits (59), Expect = 4.4 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 6/92 (6%) Frame = +3 Query: 102 SNNSIQTDLPGKDVDMRVQHSISI-----LQTEDINDRVETSKELGISKD-TIDIDQYTK 263 S NS ++P D Q S+S +TE+ +++ +E SK T D + Sbjct: 634 SLNSDDREMPDTDTGKETQDSVSEEKQPGSRTENSTTKLDAVQEKRSSKPVTTDNSEKPV 693 Query: 264 DALKFASKDKENIDISNEPFENNKAVSSESKD 359 D + S+DK + EP ++ +SSE+KD Sbjct: 694 DII-CPSQDKCSGKELQEPLKDGNKLSSENKD 724 >At4g24200.1 68417.m03474 expressed protein hypothetical protein - Arabidopsis thaliana,PIR2:T06677 Length = 1000 Score = 27.5 bits (58), Expect = 5.8 Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Frame = +3 Query: 9 NNSNDSQSNLLGSAAANKDLDLRVPPVIPVSSNNSIQTDLPGKDVDMRVQHSISILQTED 188 N +D+ S L G ++ + + ++N + D+ D RV+ + + Sbjct: 397 NQDSDNSSRLSGGLGRSRKFE---SDNLTGLADNEGKDDMGHSDKKRRVKR-----RKKR 448 Query: 189 INDRVET-SKELG-ISKDTIDIDQYTKDALKFASKDKENIDISNEPFENNKAVSSESKD 359 I+ R T S+ LG I K T DID DAL+ A+K + + + E + + S E D Sbjct: 449 ISSRSMTISQRLGAIDKTTTDIDLGILDALEVATKVAQEVAREVDSGEPSHSSSEELSD 507 >At2g42600.2 68415.m05272 phosphoenolpyruvate carboxylase, putative / PEP carboxylase, putative (PPC2) strong similarity to phosphoenolpyruvate carboxylase [Brassica napus] GI:507808; contains Pfam profile PF00311: phosphoenolpyruvate carboxylase Length = 793 Score = 27.5 bits (58), Expect = 5.8 Identities = 22/77 (28%), Positives = 32/77 (41%) Frame = +3 Query: 15 SNDSQSNLLGSAAANKDLDLRVPPVIPVSSNNSIQTDLPGKDVDMRVQHSISILQTEDIN 194 S D+Q LL ++D L + + I DL G+DV VQ + D N Sbjct: 11 SIDAQLRLLAPGKVSEDDKLIEYDALLLDRFLDILQDLHGEDVREFVQECYEVAADYDGN 70 Query: 195 DRVETSKELGISKDTID 245 E +ELG ++D Sbjct: 71 RNTEKLEELGNMLTSLD 87 >At2g42600.1 68415.m05271 phosphoenolpyruvate carboxylase, putative / PEP carboxylase, putative (PPC2) strong similarity to phosphoenolpyruvate carboxylase [Brassica napus] GI:507808; contains Pfam profile PF00311: phosphoenolpyruvate carboxylase Length = 793 Score = 27.5 bits (58), Expect = 5.8 Identities = 22/77 (28%), Positives = 32/77 (41%) Frame = +3 Query: 15 SNDSQSNLLGSAAANKDLDLRVPPVIPVSSNNSIQTDLPGKDVDMRVQHSISILQTEDIN 194 S D+Q LL ++D L + + I DL G+DV VQ + D N Sbjct: 11 SIDAQLRLLAPGKVSEDDKLIEYDALLLDRFLDILQDLHGEDVREFVQECYEVAADYDGN 70 Query: 195 DRVETSKELGISKDTID 245 E +ELG ++D Sbjct: 71 RNTEKLEELGNMLTSLD 87 >At5g15840.1 68418.m01853 zinc finger protein CONSTANS (CO) identical to Zinc finger protein CONSTANS SP:Q39057 from [Arabidopsis thaliana] Length = 373 Score = 27.1 bits (57), Expect = 7.7 Identities = 16/45 (35%), Positives = 21/45 (46%) Frame = +3 Query: 339 VSSESKDVDHRVLPFVEETPRLILSNTDGASLKRECDTDIRFLHP 473 V+S K V RV E P L D ASL CD+++ +P Sbjct: 53 VASRHKRV--RVCESCERAPAAFLCEADDASLCTACDSEVHSANP 95 >At4g40060.1 68417.m05672 homeobox-leucine zipper protein 16 (HB-16) / HD-ZIP transcription factor 16 identical to homeodomain leucine-zipper protein ATHB-16 (GP:5668909|) {Arabidopsis thaliana} Length = 294 Score = 27.1 bits (57), Expect = 7.7 Identities = 19/68 (27%), Positives = 33/68 (48%) Frame = +3 Query: 270 LKFASKDKENIDISNEPFENNKAVSSESKDVDHRVLPFVEETPRLILSNTDGASLKRECD 449 L+ SK K ++ E NNKA++ K+ + + +P L ++ G + +R Sbjct: 145 LQEISKIKAKVN-GEEDNNNNKAITEGVKEEEVHKTDSIPSSPLQFLEHSSGFNYRRSF- 202 Query: 450 TDIRFLHP 473 TD+R L P Sbjct: 203 TDLRDLLP 210 >At3g14490.1 68416.m01835 terpene synthase/cyclase family protein contains Pfam profile: PF01397 terpene synthase family Length = 601 Score = 27.1 bits (57), Expect = 7.7 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 2/70 (2%) Frame = +3 Query: 156 QHSISILQTEDINDRVETSKELGISKDTIDIDQYTKDALKFASKD--KENIDISNEPFEN 329 QH + ++ + ND +E+S+ L T+ D + L A D I+++ +P Sbjct: 41 QHHLVCVRATESNDNLESSRPLAHFSPTLWGDHFLSVPLHVAEFDDFSREIEVTMKPKVR 100 Query: 330 NKAVSSESKD 359 + SS++ D Sbjct: 101 DMLKSSKNSD 110 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,546,562 Number of Sequences: 28952 Number of extensions: 205893 Number of successful extensions: 614 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 602 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 614 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 957410176 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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