Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313E01f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g29760.1 68414.m03639 expressed protein 32 0.20
At1g19010.2 68414.m02366 expressed protein 32 0.27
At1g19010.1 68414.m02365 expressed protein 32 0.27
At3g15950.1 68416.m02017 DNA topoisomerase-related similar to DN... 31 0.62
At5g63330.1 68418.m07948 DNA-binding bromodomain-containing prot... 30 1.1
At2g36400.1 68415.m04467 expressed protein nearly identical to t... 30 1.1
At1g80230.1 68414.m09389 cytochrome c oxidase family protein con... 30 1.1
At5g14430.2 68418.m01689 dehydration-responsive protein-related ... 29 1.4
At5g14430.1 68418.m01688 dehydration-responsive protein-related ... 29 1.4
At1g01920.1 68414.m00110 SET domain-containing protein low simil... 29 1.9
At5g60720.1 68418.m07619 expressed protein contains Pfam profile... 29 2.5
At5g16630.1 68418.m01947 DNA repair protein Rad4 family low simi... 28 3.3
At4g23515.1 68417.m03389 Toll-Interleukin-Resistance (TIR) domai... 28 3.3
At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger) fa... 28 3.3
At4g34430.4 68417.m04893 DNA-binding family protein contains Pfa... 28 4.4
At4g34430.3 68417.m04892 DNA-binding family protein contains Pfa... 28 4.4
At4g34430.2 68417.m04891 DNA-binding family protein contains Pfa... 28 4.4
At4g34430.1 68417.m04890 DNA-binding family protein contains Pfa... 28 4.4
At4g24200.1 68417.m03474 expressed protein hypothetical protein ... 27 5.8
At2g42600.2 68415.m05272 phosphoenolpyruvate carboxylase, putati... 27 5.8
At2g42600.1 68415.m05271 phosphoenolpyruvate carboxylase, putati... 27 5.8
At5g15840.1 68418.m01853 zinc finger protein CONSTANS (CO) ident... 27 7.7
At4g40060.1 68417.m05672 homeobox-leucine zipper protein 16 (HB-... 27 7.7
At3g14490.1 68416.m01835 terpene synthase/cyclase family protein... 27 7.7
>At1g29760.1 68414.m03639 expressed protein
Length = 526
Score = 32.3 bits (70), Expect = 0.20
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 6/106 (5%)
Frame = +3
Query: 123 DLPGKDVDMRVQHSISILQTEDINDRVETSKELGISKDTIDIDQYTKDALKFASKDKENI 302
DL D++ S + + VE + EL DT D+ + TKD+ I
Sbjct: 55 DLISSDIETEPSSSSDGFDVGEKSSYVEKNAELRGDIDTSDVIESTKDS----------I 104
Query: 303 DISNEPFENNKAVSSESKDVD------HRVLPFVEETPRLILSNTD 422
D+S+E + +SS D+D +RV PF EE+ +S+ D
Sbjct: 105 DLSSEKENDLDVISSSGNDMDVIDSGRNRVDPFQEESTVTTVSSDD 150
>At1g19010.2 68414.m02366 expressed protein
Length = 290
Score = 31.9 bits (69), Expect = 0.27
Identities = 20/56 (35%), Positives = 26/56 (46%)
Frame = +3
Query: 198 RVETSKELGISKDTIDIDQYTKDALKFASKDKENIDISNEPFENNKAVSSESKDVD 365
R E +KE I T + K +KF+ K K N D SN P E + S + D D
Sbjct: 179 RKEEAKENDIELSTTPLSPSEKQCIKFSYKRKHNKDGSNSP-EGGGSSSQDDDDDD 233
>At1g19010.1 68414.m02365 expressed protein
Length = 319
Score = 31.9 bits (69), Expect = 0.27
Identities = 20/56 (35%), Positives = 26/56 (46%)
Frame = +3
Query: 198 RVETSKELGISKDTIDIDQYTKDALKFASKDKENIDISNEPFENNKAVSSESKDVD 365
R E +KE I T + K +KF+ K K N D SN P E + S + D D
Sbjct: 208 RKEEAKENDIELSTTPLSPSEKQCIKFSYKRKHNKDGSNSP-EGGGSSSQDDDDDD 262
>At3g15950.1 68416.m02017 DNA topoisomerase-related similar to DNA
topoisomerase IV subunit A (GI:26454107) [Mycoplasma
penetrans]
Length = 772
Score = 30.7 bits (66), Expect = 0.62
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 3/108 (2%)
Frame = +3
Query: 141 VDMRVQHSISILQTEDINDRVETS--KELGIS-KDTIDIDQYTKDALKFASKDKENIDIS 311
++ Q S++ LQ + D+ ETS K +S +TI + + AL+ KE++D S
Sbjct: 38 IEHEYQTSVNSLQGNEAVDQTETSGQKNSTVSDNNTISLSLSEEPALETL---KESVDTS 94
Query: 312 NEPFENNKAVSSESKDVDHRVLPFVEETPRLILSNTDGASLKRECDTD 455
E V S +DH L F L + +DG + E D
Sbjct: 95 AELGAVTDEVDKPSSMLDHIELEFEAHINELKEAGSDGINKVEESKDD 142
>At5g63330.1 68418.m07948 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 477
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +3
Query: 42 GSAAANKDLDLRVPPVIPVSSNNSIQTDLPGKDVDMR 152
G + K + + PPVIP++S+ S+++++P + MR
Sbjct: 258 GWKSIEKKIPMSKPPVIPLTSSASLESEIPFEVAPMR 294
>At2g36400.1 68415.m04467 expressed protein nearly identical to
transcription activator GRL3 [Arabidopsis thaliana]
GI:21539884 (unpublished); supporting cDNA
gi|21539883|gb|AY102636.1|
Length = 398
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +3
Query: 285 KDKENIDISNEPFENNKAVSSESKDVDHRVLPFVEETPRLILSNTDGAS 431
K + N + P+E++ S+ D H + PF ++ PR L D +S
Sbjct: 259 KQESNNMNNKRPYESHIGFSNNRSDGGHILRPFFDDWPRSSLQEADNSS 307
>At1g80230.1 68414.m09389 cytochrome c oxidase family protein
contains Pfam domain, PF01215: Cytochrome c oxidase
subunit Vb
Length = 171
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Frame = +3
Query: 30 SNLLGSAAANKDLDLRVPPVIPVSSNN---SIQTDLPGKDVD 146
S L+GSAAA+ + RV V+P+++ + +Q +L G+ +D
Sbjct: 51 SRLIGSAAADTAVKKRVEDVMPIATGHEKEELQAELEGRKLD 92
>At5g14430.2 68418.m01689 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 612
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = +3
Query: 6 INNSNDSQSNLLGSAAANKDLDLRVPPVIPVSSN 107
I N D SNL G AAA D D+ V V+PV S+
Sbjct: 456 IRNVMDMSSNLGGFAAALNDKDVWVMNVMPVQSS 489
>At5g14430.1 68418.m01688 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 612
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = +3
Query: 6 INNSNDSQSNLLGSAAANKDLDLRVPPVIPVSSN 107
I N D SNL G AAA D D+ V V+PV S+
Sbjct: 456 IRNVMDMSSNLGGFAAALNDKDVWVMNVMPVQSS 489
>At1g01920.1 68414.m00110 SET domain-containing protein low
similarity to SP|Q43088 Ribulose-1,5 bisphosphate
carboxylase/oxygenase large subunit N-
methyltransferase, chloroplast precursor (EC 2.1.1.127)
{Pisum sativum}; contains Pfam profile PF00856: SET
domain
Length = 572
Score = 29.1 bits (62), Expect = 1.9
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 134 SWKVSLDRIITRYGNYRWYS 75
SWK LD + TR+GN W+S
Sbjct: 106 SWKPYLDMLPTRFGNPLWFS 125
>At5g60720.1 68418.m07619 expressed protein contains Pfam profile
PF04784: Protein of unknown function, DUF547
Length = 691
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = +3
Query: 120 TDLPGKDVDMRVQHSISILQTEDINDRVETSKELGISKDTIDIDQYTKDALKFASK 287
T LPG V HS+ + + E KE+ + ++ +D ++ T++ L+ K
Sbjct: 50 TTLPGSISPFNVPHSVRTKKPNGQQKKEEIEKEVWMLREMLDQEEKTREILEQVQK 105
>At5g16630.1 68418.m01947 DNA repair protein Rad4 family low
similarity to SP|Q01831 DNA-repair protein complementing
XP-C cells (Xeroderma pigmentosum group C complementing
protein) {Homo sapiens}; contains Pfam profile PF03835:
DNA repair protein Rad4
Length = 865
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -3
Query: 405 LTLVSLPQTVTLCDLHPLIRWIR 337
LT VS + VT+ D+ PL+RW+R
Sbjct: 176 LTKVSNLEKVTVKDIAPLLRWVR 198
>At4g23515.1 68417.m03389 Toll-Interleukin-Resistance (TIR)
domain-containing protein contains Pfam profile PF01582:
TIR domain
Length = 331
Score = 28.3 bits (60), Expect = 3.3
Identities = 23/77 (29%), Positives = 34/77 (44%)
Frame = +3
Query: 108 NSIQTDLPGKDVDMRVQHSISILQTEDINDRVETSKELGISKDTIDIDQYTKDALKFASK 287
NS + K V+ ++H SI E N +ETS+ + + I L SK
Sbjct: 164 NSPELAFVEKVVEKIIRHLASIAAEEGRNSTLETSETPPVIQPNQIIYNVINIRL-HRSK 222
Query: 288 DKENIDISNEPFENNKA 338
EN +S P E+NK+
Sbjct: 223 SLENFKLSYNPEEDNKS 239
>At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles: PF00097 zinc
finger, C3HC4 type (RING finger), PF01697 Domain of
unknown function
Length = 913
Score = 28.3 bits (60), Expect = 3.3
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +3
Query: 198 RVETSKELGISKDTIDIDQYTK-DALKFASKDKENIDISNEPFENNKAVSSESKDVDHRV 374
R + K+ + ID+D+ + + K A K K+ ++ E E K E DH V
Sbjct: 652 RNQRVKQSLVPLPVIDLDKVIRHEEEKSAEKKKKKREMETETKEEKKIDKDEKSLSDHVV 711
Query: 375 LPFVEE 392
LP +++
Sbjct: 712 LPCIDK 717
>At4g34430.4 68417.m04893 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 986
Score = 27.9 bits (59), Expect = 4.4
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Frame = +3
Query: 102 SNNSIQTDLPGKDVDMRVQHSISI-----LQTEDINDRVETSKELGISKD-TIDIDQYTK 263
S NS ++P D Q S+S +TE+ +++ +E SK T D +
Sbjct: 634 SLNSDDREMPDTDTGKETQDSVSEEKQPGSRTENSTTKLDAVQEKRSSKPVTTDNSEKPV 693
Query: 264 DALKFASKDKENIDISNEPFENNKAVSSESKD 359
D + S+DK + EP ++ +SSE+KD
Sbjct: 694 DII-CPSQDKCSGKELQEPLKDGNKLSSENKD 724
>At4g34430.3 68417.m04892 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 983
Score = 27.9 bits (59), Expect = 4.4
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Frame = +3
Query: 102 SNNSIQTDLPGKDVDMRVQHSISI-----LQTEDINDRVETSKELGISKD-TIDIDQYTK 263
S NS ++P D Q S+S +TE+ +++ +E SK T D +
Sbjct: 632 SLNSDDREMPDTDTGKETQDSVSEEKQPGSRTENSTTKLDAVQEKRSSKPVTTDNSEKPV 691
Query: 264 DALKFASKDKENIDISNEPFENNKAVSSESKD 359
D + S+DK + EP ++ +SSE+KD
Sbjct: 692 DII-CPSQDKCSGKELQEPLKDGNKLSSENKD 722
>At4g34430.2 68417.m04891 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 985
Score = 27.9 bits (59), Expect = 4.4
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Frame = +3
Query: 102 SNNSIQTDLPGKDVDMRVQHSISI-----LQTEDINDRVETSKELGISKD-TIDIDQYTK 263
S NS ++P D Q S+S +TE+ +++ +E SK T D +
Sbjct: 634 SLNSDDREMPDTDTGKETQDSVSEEKQPGSRTENSTTKLDAVQEKRSSKPVTTDNSEKPV 693
Query: 264 DALKFASKDKENIDISNEPFENNKAVSSESKD 359
D + S+DK + EP ++ +SSE+KD
Sbjct: 694 DII-CPSQDKCSGKELQEPLKDGNKLSSENKD 724
>At4g34430.1 68417.m04890 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 985
Score = 27.9 bits (59), Expect = 4.4
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Frame = +3
Query: 102 SNNSIQTDLPGKDVDMRVQHSISI-----LQTEDINDRVETSKELGISKD-TIDIDQYTK 263
S NS ++P D Q S+S +TE+ +++ +E SK T D +
Sbjct: 634 SLNSDDREMPDTDTGKETQDSVSEEKQPGSRTENSTTKLDAVQEKRSSKPVTTDNSEKPV 693
Query: 264 DALKFASKDKENIDISNEPFENNKAVSSESKD 359
D + S+DK + EP ++ +SSE+KD
Sbjct: 694 DII-CPSQDKCSGKELQEPLKDGNKLSSENKD 724
>At4g24200.1 68417.m03474 expressed protein hypothetical protein -
Arabidopsis thaliana,PIR2:T06677
Length = 1000
Score = 27.5 bits (58), Expect = 5.8
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Frame = +3
Query: 9 NNSNDSQSNLLGSAAANKDLDLRVPPVIPVSSNNSIQTDLPGKDVDMRVQHSISILQTED 188
N +D+ S L G ++ + + ++N + D+ D RV+ + +
Sbjct: 397 NQDSDNSSRLSGGLGRSRKFE---SDNLTGLADNEGKDDMGHSDKKRRVKR-----RKKR 448
Query: 189 INDRVET-SKELG-ISKDTIDIDQYTKDALKFASKDKENIDISNEPFENNKAVSSESKD 359
I+ R T S+ LG I K T DID DAL+ A+K + + + E + + S E D
Sbjct: 449 ISSRSMTISQRLGAIDKTTTDIDLGILDALEVATKVAQEVAREVDSGEPSHSSSEELSD 507
>At2g42600.2 68415.m05272 phosphoenolpyruvate carboxylase, putative
/ PEP carboxylase, putative (PPC2) strong similarity to
phosphoenolpyruvate carboxylase [Brassica napus]
GI:507808; contains Pfam profile PF00311:
phosphoenolpyruvate carboxylase
Length = 793
Score = 27.5 bits (58), Expect = 5.8
Identities = 22/77 (28%), Positives = 32/77 (41%)
Frame = +3
Query: 15 SNDSQSNLLGSAAANKDLDLRVPPVIPVSSNNSIQTDLPGKDVDMRVQHSISILQTEDIN 194
S D+Q LL ++D L + + I DL G+DV VQ + D N
Sbjct: 11 SIDAQLRLLAPGKVSEDDKLIEYDALLLDRFLDILQDLHGEDVREFVQECYEVAADYDGN 70
Query: 195 DRVETSKELGISKDTID 245
E +ELG ++D
Sbjct: 71 RNTEKLEELGNMLTSLD 87
>At2g42600.1 68415.m05271 phosphoenolpyruvate carboxylase, putative
/ PEP carboxylase, putative (PPC2) strong similarity to
phosphoenolpyruvate carboxylase [Brassica napus]
GI:507808; contains Pfam profile PF00311:
phosphoenolpyruvate carboxylase
Length = 793
Score = 27.5 bits (58), Expect = 5.8
Identities = 22/77 (28%), Positives = 32/77 (41%)
Frame = +3
Query: 15 SNDSQSNLLGSAAANKDLDLRVPPVIPVSSNNSIQTDLPGKDVDMRVQHSISILQTEDIN 194
S D+Q LL ++D L + + I DL G+DV VQ + D N
Sbjct: 11 SIDAQLRLLAPGKVSEDDKLIEYDALLLDRFLDILQDLHGEDVREFVQECYEVAADYDGN 70
Query: 195 DRVETSKELGISKDTID 245
E +ELG ++D
Sbjct: 71 RNTEKLEELGNMLTSLD 87
>At5g15840.1 68418.m01853 zinc finger protein CONSTANS (CO)
identical to Zinc finger protein CONSTANS SP:Q39057 from
[Arabidopsis thaliana]
Length = 373
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +3
Query: 339 VSSESKDVDHRVLPFVEETPRLILSNTDGASLKRECDTDIRFLHP 473
V+S K V RV E P L D ASL CD+++ +P
Sbjct: 53 VASRHKRV--RVCESCERAPAAFLCEADDASLCTACDSEVHSANP 95
>At4g40060.1 68417.m05672 homeobox-leucine zipper protein 16 (HB-16)
/ HD-ZIP transcription factor 16 identical to
homeodomain leucine-zipper protein ATHB-16 (GP:5668909|)
{Arabidopsis thaliana}
Length = 294
Score = 27.1 bits (57), Expect = 7.7
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +3
Query: 270 LKFASKDKENIDISNEPFENNKAVSSESKDVDHRVLPFVEETPRLILSNTDGASLKRECD 449
L+ SK K ++ E NNKA++ K+ + + +P L ++ G + +R
Sbjct: 145 LQEISKIKAKVN-GEEDNNNNKAITEGVKEEEVHKTDSIPSSPLQFLEHSSGFNYRRSF- 202
Query: 450 TDIRFLHP 473
TD+R L P
Sbjct: 203 TDLRDLLP 210
>At3g14490.1 68416.m01835 terpene synthase/cyclase family protein
contains Pfam profile: PF01397 terpene synthase family
Length = 601
Score = 27.1 bits (57), Expect = 7.7
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +3
Query: 156 QHSISILQTEDINDRVETSKELGISKDTIDIDQYTKDALKFASKD--KENIDISNEPFEN 329
QH + ++ + ND +E+S+ L T+ D + L A D I+++ +P
Sbjct: 41 QHHLVCVRATESNDNLESSRPLAHFSPTLWGDHFLSVPLHVAEFDDFSREIEVTMKPKVR 100
Query: 330 NKAVSSESKD 359
+ SS++ D
Sbjct: 101 DMLKSSKNSD 110
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,546,562
Number of Sequences: 28952
Number of extensions: 205893
Number of successful extensions: 614
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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