Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313D12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    28   0.97 
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    25   5.2  
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy...    25   6.8  
SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces pom...    25   6.8  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   6.8  
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...    25   9.0  
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...    25   9.0  

>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 360 RRLCFAPSPGSDTYVVSGGCYD 425
           R +C+APS GS  Y+++  C D
Sbjct: 219 RDICWAPSMGSSYYLIATACKD 240


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 326 YTLGTFRFFRHRSPS*LNSSTP 261
           Y L + R+F H SP+  N+ TP
Sbjct: 190 YNLMSQRYFTHASPTLFNAGTP 211


>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 418 QPPLTTYVSDPGDGAKQSRRRRKHVMSDL 332
           +PPL   +S   +G + ++R  +HV+S L
Sbjct: 135 EPPLQISLSTSSNGCRLAQRLLRHVVSSL 163


>SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 416

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 294 VPEEPKSTESVSKRSDMTC 350
           +P+ PK  E VSK  D+ C
Sbjct: 311 IPQGPKGLEDVSKYPDLIC 329


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 291 PVPEEPKSTESVSKRSDMTCFRRRRL 368
           P+P  PK  E  S +S+ + FR+R L
Sbjct: 43  PIPFVPKPEEGSSNKSNSSKFRKRFL 68


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 410 ANYICIRPRRRGKAKPPSPKTCHV 339
           A + C RPRR G+ K  S + C V
Sbjct: 79  AGHPCYRPRRDGERKRKSVRGCIV 102


>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 410 ANYICIRPRRRGKAKPPSPKTCHV 339
           A + C RPRR G+ K  S + C V
Sbjct: 79  AGHPCYRPRRDGERKRKSVRGCIV 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,767,768
Number of Sequences: 5004
Number of extensions: 31067
Number of successful extensions: 73
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)