Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313D12f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0195 - 6325907-6326173,6326996-6327149,6327245-6327336,632...    28   5.2  
07_01_0880 + 7301042-7301548                                           27   6.9  
04_03_0881 + 20528257-20528760,20528837-20529283                       27   6.9  
03_05_0447 - 24421442-24422767                                         27   6.9  
10_08_0413 + 17742993-17743500,17744301-17744426,17745196-177453...    27   9.1  
08_02_0406 + 16813099-16813166,16813914-16814480,16814549-168145...    27   9.1  
03_04_0127 - 17508808-17509029,17509195-17509938,17510004-175102...    27   9.1  
01_05_0686 - 24277812-24277909,24278029-24278081,24278227-242783...    27   9.1  

>03_02_0195 -
           6325907-6326173,6326996-6327149,6327245-6327336,
           6327433-6327534,6328406-6328528,6328635-6328683,
           6328759-6328854,6328937-6329276,6329428-6329643,
           6329759-6329864,6330144-6330192,6330519-6330792,
           6330870-6330960,6331663-6331994,6332084-6332261,
           6332815-6332872,6332956-6333089
          Length = 886

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -1

Query: 398 CIRPRRRGKA-KPPSPKTCHVRSLRYTLGTFRFFRHR 291
           C R R+R K  + PS KT    SLR   GT  F R R
Sbjct: 582 CSRKRKRRKTLRDPSEKTLEEDSLRNDEGTAYFSRQR 618


>07_01_0880 + 7301042-7301548
          Length = 168

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 342 MTCFRRRRLCFAPSPGSDTY 401
           +T FRRR+    PSPG  TY
Sbjct: 111 LTSFRRRQRWLPPSPGKTTY 130


>04_03_0881 + 20528257-20528760,20528837-20529283
          Length = 316

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = +3

Query: 228 VSICYDLRNLHRSRRVQLGR*PVPEEPKSTESVSKRSDMTCFRRRRLCFAPSPGS 392
           V I Y LR++H          P P  P S+ S        C  R +LC+ P+P S
Sbjct: 7   VGILYKLRDVHHRAP------PTPTSPSSSSSPH------CHGRHQLCYPPAPSS 49


>03_05_0447 - 24421442-24422767
          Length = 441

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3

Query: 417 CYDSYRAAPFFQSRALTLP*DTYVSVLDLSLMKIC 521
           CYD   AAPF  SRA  +  D+Y    D +L  +C
Sbjct: 188 CYDLATAAPFMFSRADAVESDSY----DFALRDVC 218


>10_08_0413 +
           17742993-17743500,17744301-17744426,17745196-17745323,
           17745462-17745675,17745932-17746163,17746233-17746383,
           17746744-17746896,17747132-17747155
          Length = 511

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 384 PGSDTYVVSGGCYDSYRAAPFFQSRA 461
           P SD   V  GC+  Y   PFF + A
Sbjct: 134 PNSDGRAVDAGCFMRYSDKPFFPANA 159


>08_02_0406 +
           16813099-16813166,16813914-16814480,16814549-16814595,
           16814787-16815484
          Length = 459

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 360 RRLCFAPSPGSDTYVVSGGCYDSYRAAP 443
           RR C +P P SD    +GG   +  AAP
Sbjct: 334 RRRCLSPPPTSDAEAPTGGSASAPAAAP 361


>03_04_0127 -
           17508808-17509029,17509195-17509938,17510004-17510242,
           17510334-17510436,17510666-17510770,17510838-17510906,
           17510998-17511402,17512048-17512156,17512240-17512295
          Length = 683

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 477 LKEASELYFEKTARHDNCHNSH 412
           L E  ELY   T+RH  CH  H
Sbjct: 47  LSEMIELYESTTSRHRVCHEEH 68


>01_05_0686 -
           24277812-24277909,24278029-24278081,24278227-24278309,
           24278353-24278401,24278466-24278514,24279455-24280418
          Length = 431

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = -3

Query: 498 LVLIRKYLKEASELYFEKTARHDNCHNSHR*LHMYPTQATGQSKAAVAENMSCQ 337
           L++   + K       + + RH NC + +R      ++ +G S AA  E   CQ
Sbjct: 68  LLVCSSHEKGCRPFMCDTSYRHSNCFDQYRKASKESSKDSGASAAAAPECSECQ 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,711,395
Number of Sequences: 37544
Number of extensions: 223472
Number of successful extensions: 556
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)