Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313D12f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56184| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_45581| Best HMM Match : Ras (HMM E-Value=0.069)                     28   5.4  

>SB_56184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 242

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 294 VPEEPKSTESVSK-RSDMTCFRRRRLCFAPSPGSDTYVVSGGCYDSYR 434
           VPE    T+++     D+T +  ++L    S G D +  +G C D YR
Sbjct: 195 VPEANHITDNLRAFEFDLTDYDMQKLNKVVSKGCDLFAATGDCGDEYR 242


>SB_45581| Best HMM Match : Ras (HMM E-Value=0.069)
          Length = 284

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -1

Query: 461 SSTLKKRRGTITVITATANYICIRPRRRGKAKPPSPKTC--HVRSLRYTLG 315
           ++ LK R   +   + T  Y+ +R  +    +P +PK C  H+R+ + T+G
Sbjct: 57  NTMLKIREPQLISQSCTDGYVYLRTAKDTYGRPGTPKDCKVHLRTAKDTIG 107


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,338,036
Number of Sequences: 59808
Number of extensions: 251480
Number of successful extensions: 598
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)