Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313D12f
         (521 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ chann...    24   3.6  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    24   3.6  
AJ439398-6|CAD28129.1| 1978|Anopheles gambiae putative Tyr/Ser/T...    23   6.2  
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    23   6.2  

>AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ channel
           protein.
          Length = 574

 Score = 23.8 bits (49), Expect = 3.6
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 246 LRNLHRSRRVQLGR 287
           +RN  RSRR QLGR
Sbjct: 546 VRNTFRSRRTQLGR 559


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 23.8 bits (49), Expect = 3.6
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = -1

Query: 482 SILRKRQSSTLKKRRG 435
           ++L+KR+S+ LKKR G
Sbjct: 520 AVLKKRRSALLKKRTG 535


>AJ439398-6|CAD28129.1| 1978|Anopheles gambiae putative Tyr/Ser/Thr
            phosphatase protein.
          Length = 1978

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -2

Query: 403  TYVSDPGDGAKQSRRRRKHVMSDLLDTLSVLLGSSGTG 290
            T  +D GD A+  R RRK  +    +      G SG G
Sbjct: 1073 TGTADGGDAARDVRERRKSSLLSTQEREGSHCGVSGGG 1110


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1168

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 380  RGKAKPPSPKTCHVRSLRYTLGTFRFFRHR 291
            R +  PPSP+T  +R  R      ++ R R
Sbjct: 1112 RSRRLPPSPRTTEMRRRRRNYMQLQYRRRR 1141


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 440,746
Number of Sequences: 2352
Number of extensions: 7026
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 47783067
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)