Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313D12f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73427-8|CAA97804.1|  302|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AF100304-4|AAC68910.1|  568|Caenorhabditis elegans Gex interacti...    27   6.2  
AF100304-2|AAU20837.1|  564|Caenorhabditis elegans Gex interacti...    27   6.2  
AF100304-1|AAC68913.1|  545|Caenorhabditis elegans Gex interacti...    27   6.2  

>Z73427-8|CAA97804.1|  302|Caenorhabditis elegans Hypothetical
           protein F58B3.8 protein.
          Length = 302

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -2

Query: 211 CDSDSVVNSAKHCSCQG--*C*QILSG*SCK 125
           CD +   NS KHC+ QG   C   L+G  C+
Sbjct: 151 CDENKATNSGKHCNFQGKPSCLNGLTGSKCE 181


>AF100304-4|AAC68910.1|  568|Caenorhabditis elegans Gex interacting
           protein protein4, isoform b protein.
          Length = 568

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -2

Query: 391 DPGDGAKQSR---RRRKHVMSDLLDTLSVLLGSSGT 293
           D GD   Q R   +RR++ M D++    + +GSSGT
Sbjct: 390 DLGDSYNQKRYTPKRRRNEMDDMISAGQMAVGSSGT 425


>AF100304-2|AAU20837.1|  564|Caenorhabditis elegans Gex interacting
           protein protein4, isoform f protein.
          Length = 564

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -2

Query: 391 DPGDGAKQSR---RRRKHVMSDLLDTLSVLLGSSGT 293
           D GD   Q R   +RR++ M D++    + +GSSGT
Sbjct: 386 DLGDSYNQKRYTPKRRRNEMDDMISAGQMAVGSSGT 421


>AF100304-1|AAC68913.1|  545|Caenorhabditis elegans Gex interacting
           protein protein4, isoform a protein.
          Length = 545

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -2

Query: 391 DPGDGAKQSR---RRRKHVMSDLLDTLSVLLGSSGT 293
           D GD   Q R   +RR++ M D++    + +GSSGT
Sbjct: 367 DLGDSYNQKRYTPKRRRNEMDDMISAGQMAVGSSGT 402


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,862,691
Number of Sequences: 27780
Number of extensions: 180222
Number of successful extensions: 391
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)