Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313D12f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g07820.1 68418.m00896 expressed protein                             28   4.4  
At3g63210.1 68416.m07101 expressed protein identical to senescen...    27   5.8  
At1g26600.1 68414.m03240 CLE9, putative CLAVATA3/ESR-Related 9 (...    27   5.8  
At1g69320.1 68414.m07950 CLE10, putative CLAVATA3/ESR-Related 10...    27   7.7  

>At5g07820.1 68418.m00896 expressed protein
          Length = 561

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 473 RKRQSSTLKKRRGTITVITATANYICIRPRRRG-KAKPPSPKT 348
           R + S   KK+ G+  ++T       IRP+R G K  PP P T
Sbjct: 378 RSKTSLPEKKQSGSANLVTNPKPESKIRPKRIGLKVTPPPPPT 420


>At3g63210.1 68416.m07101 expressed protein identical to
           senescence-associated protein SAG102 (GI::22331931)
           [Arabidopsis thaliana] (unpublished); contains Pfam
           profile PF04570: Protein of unknown function (DUF581)
          Length = 263

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 365 PPSPKTCHVRSLRYTLGTFRFF 300
           PP P TCH     ++   FRFF
Sbjct: 26  PPKPNTCHCSPSLFSSPKFRFF 47


>At1g26600.1 68414.m03240 CLE9, putative CLAVATA3/ESR-Related 9
           (CLE9); similar to hypothetical protein GB:AAF67770
           GI:7705091 from [Arabidopsis thaliana]
          Length = 120

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 222 WAVSICYDLRNLHRSRRVQLGR*PVPEEPKSTESVSKR 335
           +A S+C +L+ +HRS R Q    P P E      V KR
Sbjct: 72  YARSMCIELQRIHRSSRKQPLLSPPPPEIDPRYGVDKR 109


>At1g69320.1 68414.m07950 CLE10, putative CLAVATA3/ESR-Related 10
           (CLE10)
          Length = 107

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 198 ESESQPTQWAVSICYDLRNLHRSRRVQL-GR*PVPEEPKSTESVSKR 335
           ES S+P  +A S+C +L  +HRS R  L    P P E      V KR
Sbjct: 52  ESFSRP--YARSMCIELERIHRSSRQPLFSPPPPPTEIDQRYGVEKR 96


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,262,390
Number of Sequences: 28952
Number of extensions: 170299
Number of successful extensions: 357
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)