BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS313D03f (408 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 88 4e-19 SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 80 2e-16 SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 64 1e-11 SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 50 1e-07 SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 46 3e-06 SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 45 4e-06 SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 43 2e-05 SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 36 0.003 SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 34 0.010 SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 32 0.030 SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 30 0.12 SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 29 0.21 SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 29 0.28 SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 29 0.37 SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac... 28 0.49 SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 28 0.49 SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 28 0.49 SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc... 28 0.49 SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 28 0.64 SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 27 0.85 SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 0.85 SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 26 2.0 SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 26 2.0 SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 2.0 SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 26 2.0 SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 3.4 SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po... 25 4.5 SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces... 25 6.0 SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc... 25 6.0 SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 24 7.9 >SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizosaccharomyces pombe|chr 2|||Manual Length = 473 Score = 88.2 bits (209), Expect = 4e-19 Identities = 43/108 (39%), Positives = 74/108 (68%), Gaps = 3/108 (2%) Frame = +1 Query: 1 FRLNTASRE--TRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NS 171 F+LN AS ++ E+S++VGDLSP+V+++ +Y +FAS+Y S K+AK++ D + Sbjct: 165 FKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQT 224 Query: 172 GYTKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPKPKSNL 315 ++GYGFVRF +E++Q++AL M G G +P+++ A PK K+++ Sbjct: 225 NVSRGYGFVRFTDENDQKSALAEMQGQI-CGDRPIRVGLATPKSKAHV 271 Score = 33.5 bits (73), Expect = 0.013 Identities = 22/89 (24%), Positives = 45/89 (50%) Frame = +1 Query: 10 NTASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGY 189 NT++ + + ++ ++W+G+L P V + + +V+ + ++K + +G GY Sbjct: 77 NTSNYGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGY 136 Query: 190 GFVRFGNEDEQRNALYAMNGYCGLGTKPL 276 FV F + E +A+ +MN GT L Sbjct: 137 CFVEFASPHEASSAM-SMNNKPIPGTNHL 164 Score = 25.8 bits (54), Expect = 2.6 Identities = 21/74 (28%), Positives = 33/74 (44%) Frame = +1 Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240 +V+VG LS V + L KY +++ KG GFV+F N A+ Sbjct: 304 TVFVGGLSKFVSEEEL------KYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQ 357 Query: 241 MNGYCGLGTKPLKI 282 + GY LG +++ Sbjct: 358 LQGY-PLGNSRIRL 370 >SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces pombe|chr 1|||Manual Length = 632 Score = 79.8 bits (188), Expect = 2e-16 Identities = 40/93 (43%), Positives = 61/93 (65%), Gaps = 1/93 (1%) Frame = +1 Query: 40 MQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNED 216 + + EFS++VGDL P +D L+ F S Y S +AK+I+D +G ++ YGFVRF +E Sbjct: 176 VSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEK 235 Query: 217 EQRNALYAMNGYCGLGTKPLKICTAVPKPKSNL 315 EQ++AL M GY G +PL+I A PK ++++ Sbjct: 236 EQQHALMHMQGYLCQG-RPLRISVASPKSRASI 267 Score = 28.7 bits (61), Expect = 0.37 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%) Frame = +1 Query: 61 SVWVGDLSPDVDDYSLYRVFAS--KYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNAL 234 ++W+GDL P +D + +++AS + ++K + +S Y FV+F + AL Sbjct: 86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERAL 145 Query: 235 YAMN 246 N Sbjct: 146 MKYN 149 >SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 219 Score = 63.7 bits (148), Expect = 1e-11 Identities = 34/85 (40%), Positives = 51/85 (60%) Frame = +1 Query: 58 FSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALY 237 F ++VG+L DV+D SLY+ F S+Y S+ KV+ D G T+G+GFV F + D+ A Sbjct: 30 FRLFVGNLGNDVNDESLYQAF-SEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWR 88 Query: 238 AMNGYCGLGTKPLKICTAVPKPKSN 312 NG +G++P+K+ A K N Sbjct: 89 EKNGKY-IGSRPVKLSRATSDVKPN 112 >SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizosaccharomyces pombe|chr 1|||Manual Length = 335 Score = 50.0 bits (114), Expect = 1e-07 Identities = 32/96 (33%), Positives = 52/96 (54%) Frame = +1 Query: 4 RLNTASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTK 183 R+N AS++ N +++VG+L P VD+ LY F++ +K +V D +G +K Sbjct: 83 RVNRASQDRGVNTLIGA--NLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSK 140 Query: 184 GYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTA 291 GYGFV + + + A+ AMN L KP+ + A Sbjct: 141 GYGFVSYDSFETADAAIEAMNNQF-LMNKPITVSYA 175 >SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||Manual Length = 500 Score = 45.6 bits (103), Expect = 3e-06 Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 1/93 (1%) Frame = +1 Query: 28 TRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRF 204 T+ + +V+VG LS +VDD L + F +Y +I A+VI+D SG +KGYG+V F Sbjct: 253 TKPSQDSNETCTVFVGRLSWNVDDQWLGQEF-EEYGTIVGARVIMDGQSGRSKGYGYVDF 311 Query: 205 GNEDEQRNALYAMNGYCGLGTKPLKICTAVPKP 303 E A A NG + + + + + P+P Sbjct: 312 -ETPEAAKAAVAANGTKEIDGRMVNLDLSNPRP 343 Score = 31.5 bits (68), Expect = 0.052 Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 1/81 (1%) Frame = +1 Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNALY 237 +V+VG+LS + + L F I++ ++ D SG KG+G+V F + D + + Sbjct: 367 TVFVGNLSFNATEDDLSTAFGG-CGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV- 424 Query: 238 AMNGYCGLGTKPLKICTAVPK 300 MNG+ G +P ++ + P+ Sbjct: 425 EMNGHFIAG-RPCRLDFSTPR 444 >SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 653 Score = 45.2 bits (102), Expect = 4e-06 Identities = 27/80 (33%), Positives = 44/80 (55%) Frame = +1 Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240 ++++ +L +VDD L F S + +I +AK++ D G +KG+GFV + +E A+ Sbjct: 365 NLFIKNLQDEVDDERLKAEF-SAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTE 423 Query: 241 MNGYCGLGTKPLKICTAVPK 300 MN L KPL + A K Sbjct: 424 MNQRM-LAGKPLYVALAQRK 442 Score = 44.8 bits (101), Expect = 5e-06 Identities = 22/63 (34%), Positives = 37/63 (58%) Frame = +1 Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240 +V++ +L P +D+ +L+ F S + I + KV +D G KGYGFV F + + A+ Sbjct: 169 NVFIKNLDPAIDNKALHDTF-SAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEH 227 Query: 241 MNG 249 +NG Sbjct: 228 VNG 230 >SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Schizosaccharomyces pombe|chr 1|||Manual Length = 434 Score = 43.2 bits (97), Expect = 2e-05 Identities = 23/76 (30%), Positives = 45/76 (59%) Frame = +1 Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAM 243 ++VG+L D +L +F S+ A++ + +G +KG+G V+F NE++ +++ + Sbjct: 282 IYVGNLPWATSDRNLLDLFTD-IGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKL 340 Query: 244 NGYCGLGTKPLKICTA 291 NGY G +PL++ A Sbjct: 341 NGY-RYGGRPLQLSYA 355 >SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces pombe|chr 1|||Manual Length = 604 Score = 35.5 bits (78), Expect = 0.003 Identities = 18/72 (25%), Positives = 39/72 (54%) Frame = +1 Query: 70 VGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAMNG 249 V ++ ++ D + +F + I+ + D+ +KG+G++++ N RNAL MNG Sbjct: 344 VSNIHFNLTDEDVKAIF-EPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNG 402 Query: 250 YCGLGTKPLKIC 285 + L + +++C Sbjct: 403 F-DLAGRNMRVC 413 Score = 31.1 bits (67), Expect = 0.069 Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 1/88 (1%) Frame = +1 Query: 4 RLNTASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYT 180 R R ++ + + +V+V L+ + LY F + ++ A+++ D SG + Sbjct: 222 RSRPRERSSKLSEEERDRRTVFVSQLANRLTSRELYDFF-EQAGPVRDAQIVRDKISGRS 280 Query: 181 KGYGFVRFGNEDEQRNALYAMNGYCGLG 264 KG +V F +ED + A+ A++G LG Sbjct: 281 KGVAYVEFCHEDSVQAAI-ALSGKRLLG 307 >SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 422 Score = 33.9 bits (74), Expect = 0.010 Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 1/74 (1%) Frame = +1 Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNALYA 240 V+VG++ ++ + + +F +K+ ++++D SG KGYGF + + +A+ Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQS-GPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRN 65 Query: 241 MNGYCGLGTKPLKI 282 +N Y GT+ L++ Sbjct: 66 LNNY-DAGTRRLRV 78 >SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||Manual Length = 710 Score = 32.3 bits (70), Expect = 0.030 Identities = 18/45 (40%), Positives = 24/45 (53%) Frame = +1 Query: 166 NSGYTKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPK 300 NSG +KGYGFV F + A +NG +G K + +C A K Sbjct: 420 NSGISKGYGFVAFRQIEAAVRAKDTLNGMM-VGKKRIFVCFAERK 463 >SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 348 Score = 30.3 bits (65), Expect = 0.12 Identities = 11/23 (47%), Positives = 16/23 (69%) Frame = +1 Query: 181 KGYGFVRFGNEDEQRNALYAMNG 249 +G+GFV F N ++Q A+ MNG Sbjct: 258 RGFGFVSFANAEDQSRAIEEMNG 280 Score = 27.5 bits (58), Expect = 0.85 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 4/85 (4%) Frame = +1 Query: 7 LNTASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYT----SIKTAKVILDNSG 174 ++ ++ ++ Q +F V+VG LS + +F + T +I +V Sbjct: 27 VHASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRL 86 Query: 175 YTKGYGFVRFGNEDEQRNALYAMNG 249 G FV F N+++ A+ +NG Sbjct: 87 VPSGIAFVTFNNQEDVDKAIETLNG 111 >SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating transcription Rct1|Schizosaccharomyces pombe|chr 2|||Manual Length = 432 Score = 29.5 bits (63), Expect = 0.21 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Frame = +1 Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYA 240 ++V L+P D L +F S++ I + +VI D +G + Y F+ F N++ A + Sbjct: 246 LFVCKLNPVTQDEDLELIF-SRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFK 304 Query: 241 M 243 M Sbjct: 305 M 305 >SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 674 Score = 29.1 bits (62), Expect = 0.28 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 2/68 (2%) Frame = +1 Query: 118 FASKYTSIKTAKVILD-NSGYTKGYGFVRFGN-EDEQRNALYAMNGYCGLGTKPLKICTA 291 F S IK A V+ + +G +GYGFV F ED QR A N L + L++ A Sbjct: 24 FFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKELKNK--KLHGRILRLDFA 81 Query: 292 VPKPKSNL 315 P+ +S + Sbjct: 82 TPRKRSEV 89 Score = 25.0 bits (52), Expect = 4.5 Identities = 14/59 (23%), Positives = 27/59 (45%) Frame = +1 Query: 124 SKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPK 300 SK+ ++ K+ G G+ FV + A+ ++NG + +P+ + AV K Sbjct: 129 SKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNG-TEIDGRPIAVDWAVSK 186 Score = 24.2 bits (50), Expect = 7.9 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%) Frame = +1 Query: 139 IKTAKVILDNSGY--TKGYGFVRFGNEDEQRNALYAMNG 249 +K AKV + +G +KG+GF++F + AL +NG Sbjct: 523 LKQAKVETEKAGAGRSKGFGFMQFISHKYALMALRWLNG 561 >SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schizosaccharomyces pombe|chr 2|||Manual Length = 695 Score = 28.7 bits (61), Expect = 0.37 Identities = 18/85 (21%), Positives = 41/85 (48%), Gaps = 4/85 (4%) Frame = +1 Query: 10 NTASRETRA----NMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGY 177 +T RE+R N Q R +++G++ ++DD+ + ++ + + + + D Sbjct: 120 STTERESRPFVPPNSQQMRRM-LFIGNIPKELDDFWMDKILRLS-GKLASWRRVADADNS 177 Query: 178 TKGYGFVRFGNEDEQRNALYAMNGY 252 +GF F + ++ AL A+N + Sbjct: 178 MTSFGFAEFESNEQFSRALEALNDF 202 >SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosaccharomyces pombe|chr 1|||Manual Length = 387 Score = 28.3 bits (60), Expect = 0.49 Identities = 16/42 (38%), Positives = 21/42 (50%) Frame = +1 Query: 70 VGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGF 195 V L P+VD +S+ + S Y K K + SGYT GF Sbjct: 178 VQKLIPNVD-FSVLKFGQSAYVDFKGVKCLFSRSGYTGEDGF 218 >SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces pombe|chr 1|||Manual Length = 365 Score = 28.3 bits (60), Expect = 0.49 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = +1 Query: 184 GYGFVRFGNEDEQRNALYAMNG 249 G G V F E++ RNAL ++NG Sbjct: 135 GAGVVEFSTEEDMRNALTSLNG 156 >SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces pombe|chr 1|||Manual Length = 609 Score = 28.3 bits (60), Expect = 0.49 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Frame = +1 Query: 124 SKYTSIKTAKVI-LDNSGYTKGYGFVRFGNEDEQRNALYAMNG 249 SK+ IK+ + ++ +KGYGFV F + E A+ +NG Sbjct: 442 SKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNG 484 Score = 27.1 bits (57), Expect = 1.1 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 5/70 (7%) Frame = +1 Query: 55 EFSVWVGDLSPDVDDYSLYRVFA-----SKYTSIKTAKVILDNSGYTKGYGFVRFGNEDE 219 E S++VG+L L+ +F SK+ + K +S + F+ F N+ Sbjct: 19 EISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCS 78 Query: 220 QRNALYAMNG 249 NA+ ++NG Sbjct: 79 ADNAIASLNG 88 >SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces pombe|chr 1|||Manual Length = 490 Score = 28.3 bits (60), Expect = 0.49 Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 3/77 (3%) Frame = +1 Query: 52 REFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAK---VILDNSGYTKGYGFVRFGNEDEQ 222 R F + + +P+ ++ L VF S+ + + V++ S YTK + E+ Sbjct: 342 RGFGLLIPSCTPNNPNHVLGIVFDSEQNNPENGSKVTVMMGGSAYTKNTSLIPTNPEEAV 401 Query: 223 RNALYAMNGYCGLGTKP 273 NAL A+ + +KP Sbjct: 402 NNALKALQHTLKISSKP 418 >SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces pombe|chr 1|||Manual Length = 369 Score = 27.9 bits (59), Expect = 0.64 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 1/76 (1%) Frame = +1 Query: 10 NTASRETRANMQHEREFSV-WVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKG 186 NT S+ + S+ +VG+L + D L F + + +++G KG Sbjct: 211 NTLSKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKG 270 Query: 187 YGFVRFGNEDEQRNAL 234 +GFV F + D A+ Sbjct: 271 FGFVDFPDIDTCMKAM 286 >SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schizosaccharomyces pombe|chr 2|||Manual Length = 137 Score = 27.5 bits (58), Expect = 0.85 Identities = 16/63 (25%), Positives = 34/63 (53%) Frame = +1 Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAM 243 +++ +LS + +Y +F +Y ++ ++ L N+ T+G FV + N + R A + Sbjct: 14 LFIKNLSFKITAEEMYDLFG-RYGPVR--QIRLGNTVQTRGTAFVVYENVQDARRACEKL 70 Query: 244 NGY 252 +GY Sbjct: 71 SGY 73 >SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 1060 Score = 27.5 bits (58), Expect = 0.85 Identities = 17/69 (24%), Positives = 34/69 (49%) Frame = +1 Query: 43 QHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQ 222 QHE ++WVG+L V ++ F S Y ++ + +++ K F+ F + + Sbjct: 582 QHEPTHALWVGNLPSGVSATTVATTF-SAYGTVSSIRMLSH-----KHSAFLNFDSVETA 635 Query: 223 RNALYAMNG 249 ++ L +NG Sbjct: 636 KHVLEELNG 644 >SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosaccharomyces pombe|chr 1|||Manual Length = 533 Score = 26.2 bits (55), Expect = 2.0 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Frame = +1 Query: 58 FSVWVGDLSP-DVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNAL 234 +S++VG L P + Y L +F SKY + K+I + + F+RF D Q+ A Sbjct: 365 YSIFVGQLDPVNCTHYLLVDLF-SKYGKVIDCKII--HQSKKPAFAFLRF---DSQQAAY 418 Query: 235 YAMNG 249 A+ G Sbjct: 419 AAVCG 423 >SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 833 Score = 26.2 bits (55), Expect = 2.0 Identities = 10/23 (43%), Positives = 16/23 (69%) Frame = +1 Query: 184 GYGFVRFGNEDEQRNALYAMNGY 252 G+GFV F ++ A++AMNG+ Sbjct: 666 GFGFVEFKDKASAVAAMHAMNGF 688 >SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 121 Score = 26.2 bits (55), Expect = 2.0 Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Frame = +1 Query: 58 FSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNAL 234 + + V + P+ + + +FA + +K + LD +GY KGY + + ++ + A+ Sbjct: 10 YIIIVTGVHPEATEEQVEDLFAD-FGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAV 68 Query: 235 YAMN 246 N Sbjct: 69 DEKN 72 >SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces pombe|chr 2|||Manual Length = 199 Score = 26.2 bits (55), Expect = 2.0 Identities = 16/76 (21%), Positives = 29/76 (38%) Frame = +1 Query: 55 EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNAL 234 E + V +L DV + + +F K + +G +KG + F + A Sbjct: 54 ESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPNGRSKGIATIIFSRPGDATRAY 113 Query: 235 YAMNGYCGLGTKPLKI 282 G GT+ +K+ Sbjct: 114 EQYEGRLVDGTRKMKV 129 >SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual Length = 105 Score = 25.4 bits (53), Expect = 3.4 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = -3 Query: 235 IVHYVAHLHYQI*QSHILLYSQNYLISL 152 I+ ++ +HY I S LL + NYL+ L Sbjct: 59 IIQHLKEIHYLISASAKLLLASNYLLEL 86 >SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces pombe|chr 1|||Manual Length = 216 Score = 25.0 bits (52), Expect = 4.5 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%) Frame = +1 Query: 124 SKYTSIKTAKVILDNSG-YTKGYGFVRFGNEDEQRNALYAMN 246 SKY ++ V+ DN G + G +VRF E+ +NA+ +N Sbjct: 85 SKYGEVEQL-VVCDNVGDHLVGNVYVRFKYEESAQNAIDDLN 125 >SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces pombe|chr 2|||Manual Length = 735 Score = 24.6 bits (51), Expect = 6.0 Identities = 8/17 (47%), Positives = 12/17 (70%) Frame = +1 Query: 187 YGFVRFGNEDEQRNALY 237 YG +R+G E+E R +Y Sbjct: 617 YGLIRYGYEEETRRLVY 633 >SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Schizosaccharomyces pombe|chr 1|||Manual Length = 380 Score = 24.6 bits (51), Expect = 6.0 Identities = 14/39 (35%), Positives = 19/39 (48%) Frame = -3 Query: 250 NHSWHIVHYVAHLHYQI*QSHILLYSQNYLISL*QFLWK 134 N WH VH + + Q+ +S IL Y Q I +WK Sbjct: 307 NMQWHEVHCLNRVIAQVKKSLILCYVQCPSIEDFNKIWK 345 >SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizosaccharomyces pombe|chr 2|||Manual Length = 282 Score = 24.2 bits (50), Expect = 7.9 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 4/83 (4%) Frame = +1 Query: 16 ASRETRANM-QHEREFSVW--VGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTK 183 + RE+ +M + ER+ S V +LS D + L +F ++ I+ + D +G K Sbjct: 185 SGRESGDSMFKRERDDSATLRVTNLSDDTREEELRDLFR-RFGGIQRVYLAKDKETGRAK 243 Query: 184 GYGFVRFGNEDEQRNALYAMNGY 252 G+ FV + + D A ++GY Sbjct: 244 GFAFVSYYDRDCAIKARDRLDGY 266 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.135 0.415 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,584,140 Number of Sequences: 5004 Number of extensions: 30369 Number of successful extensions: 111 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 97 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 108 length of database: 2,362,478 effective HSP length: 66 effective length of database: 2,032,214 effective search space used: 140222766 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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