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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313D03f
         (408 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    88   4e-19
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces...    80   2e-16
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch...    64   1e-11
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    50   1e-07
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    46   3e-06
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    45   4e-06
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    43   2e-05
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    36   0.003
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    34   0.010
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    32   0.030
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei...    30   0.12 
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    29   0.21 
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    29   0.28 
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    29   0.37 
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac...    28   0.49 
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    28   0.49 
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    28   0.49 
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc...    28   0.49 
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces...    28   0.64 
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi...    27   0.85 
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   0.85 
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    26   2.0  
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    26   2.0  
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   2.0  
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ...    26   2.0  
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       25   3.4  
SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po...    25   4.5  
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    25   6.0  
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    25   6.0  
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos...    24   7.9  

>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 88.2 bits (209), Expect = 4e-19
 Identities = 43/108 (39%), Positives = 74/108 (68%), Gaps = 3/108 (2%)
 Frame = +1

Query: 1   FRLNTASRE--TRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NS 171
           F+LN AS       ++    E+S++VGDLSP+V+++ +Y +FAS+Y S K+AK++ D  +
Sbjct: 165 FKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQT 224

Query: 172 GYTKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPKPKSNL 315
             ++GYGFVRF +E++Q++AL  M G    G +P+++  A PK K+++
Sbjct: 225 NVSRGYGFVRFTDENDQKSALAEMQGQI-CGDRPIRVGLATPKSKAHV 271



 Score = 33.5 bits (73), Expect = 0.013
 Identities = 22/89 (24%), Positives = 45/89 (50%)
 Frame = +1

Query: 10  NTASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGY 189
           NT++  +  +    ++ ++W+G+L P V +  + +V+ +   ++K   +    +G   GY
Sbjct: 77  NTSNYGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGY 136

Query: 190 GFVRFGNEDEQRNALYAMNGYCGLGTKPL 276
            FV F +  E  +A+ +MN     GT  L
Sbjct: 137 CFVEFASPHEASSAM-SMNNKPIPGTNHL 164



 Score = 25.8 bits (54), Expect = 2.6
 Identities = 21/74 (28%), Positives = 33/74 (44%)
 Frame = +1

Query: 61  SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
           +V+VG LS  V +  L      KY      +++       KG GFV+F N      A+  
Sbjct: 304 TVFVGGLSKFVSEEEL------KYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQ 357

Query: 241 MNGYCGLGTKPLKI 282
           + GY  LG   +++
Sbjct: 358 LQGY-PLGNSRIRL 370


>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 79.8 bits (188), Expect = 2e-16
 Identities = 40/93 (43%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
 Frame = +1

Query: 40  MQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNED 216
           +  + EFS++VGDL P  +D  L+  F S Y S  +AK+I+D  +G ++ YGFVRF +E 
Sbjct: 176 VSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEK 235

Query: 217 EQRNALYAMNGYCGLGTKPLKICTAVPKPKSNL 315
           EQ++AL  M GY   G +PL+I  A PK ++++
Sbjct: 236 EQQHALMHMQGYLCQG-RPLRISVASPKSRASI 267



 Score = 28.7 bits (61), Expect = 0.37
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +1

Query: 61  SVWVGDLSPDVDDYSLYRVFAS--KYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNAL 234
           ++W+GDL P +D   + +++AS  +  ++K  +    +S     Y FV+F +      AL
Sbjct: 86  TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERAL 145

Query: 235 YAMN 246
              N
Sbjct: 146 MKYN 149


>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 63.7 bits (148), Expect = 1e-11
 Identities = 34/85 (40%), Positives = 51/85 (60%)
 Frame = +1

Query: 58  FSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALY 237
           F ++VG+L  DV+D SLY+ F S+Y S+   KV+ D  G T+G+GFV F + D+   A  
Sbjct: 30  FRLFVGNLGNDVNDESLYQAF-SEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWR 88

Query: 238 AMNGYCGLGTKPLKICTAVPKPKSN 312
             NG   +G++P+K+  A    K N
Sbjct: 89  EKNGKY-IGSRPVKLSRATSDVKPN 112


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 50.0 bits (114), Expect = 1e-07
 Identities = 32/96 (33%), Positives = 52/96 (54%)
 Frame = +1

Query: 4   RLNTASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTK 183
           R+N AS++   N       +++VG+L P VD+  LY  F++    +K  +V  D +G +K
Sbjct: 83  RVNRASQDRGVNTLIGA--NLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSK 140

Query: 184 GYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTA 291
           GYGFV + + +    A+ AMN    L  KP+ +  A
Sbjct: 141 GYGFVSYDSFETADAAIEAMNNQF-LMNKPITVSYA 175


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 45.6 bits (103), Expect = 3e-06
 Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
 Frame = +1

Query: 28  TRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRF 204
           T+ +       +V+VG LS +VDD  L + F  +Y +I  A+VI+D  SG +KGYG+V F
Sbjct: 253 TKPSQDSNETCTVFVGRLSWNVDDQWLGQEF-EEYGTIVGARVIMDGQSGRSKGYGYVDF 311

Query: 205 GNEDEQRNALYAMNGYCGLGTKPLKICTAVPKP 303
               E   A  A NG   +  + + +  + P+P
Sbjct: 312 -ETPEAAKAAVAANGTKEIDGRMVNLDLSNPRP 343



 Score = 31.5 bits (68), Expect = 0.052
 Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
 Frame = +1

Query: 61  SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNALY 237
           +V+VG+LS +  +  L   F      I++ ++  D  SG  KG+G+V F + D  +  + 
Sbjct: 367 TVFVGNLSFNATEDDLSTAFGG-CGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV- 424

Query: 238 AMNGYCGLGTKPLKICTAVPK 300
            MNG+   G +P ++  + P+
Sbjct: 425 EMNGHFIAG-RPCRLDFSTPR 444


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 45.2 bits (102), Expect = 4e-06
 Identities = 27/80 (33%), Positives = 44/80 (55%)
 Frame = +1

Query: 61  SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
           ++++ +L  +VDD  L   F S + +I +AK++ D  G +KG+GFV +   +E   A+  
Sbjct: 365 NLFIKNLQDEVDDERLKAEF-SAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTE 423

Query: 241 MNGYCGLGTKPLKICTAVPK 300
           MN    L  KPL +  A  K
Sbjct: 424 MNQRM-LAGKPLYVALAQRK 442



 Score = 44.8 bits (101), Expect = 5e-06
 Identities = 22/63 (34%), Positives = 37/63 (58%)
 Frame = +1

Query: 61  SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
           +V++ +L P +D+ +L+  F S +  I + KV +D  G  KGYGFV F + +    A+  
Sbjct: 169 NVFIKNLDPAIDNKALHDTF-SAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEH 227

Query: 241 MNG 249
           +NG
Sbjct: 228 VNG 230


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 43.2 bits (97), Expect = 2e-05
 Identities = 23/76 (30%), Positives = 45/76 (59%)
 Frame = +1

Query: 64  VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAM 243
           ++VG+L     D +L  +F     S+  A++  + +G +KG+G V+F NE++  +++  +
Sbjct: 282 IYVGNLPWATSDRNLLDLFTD-IGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKL 340

Query: 244 NGYCGLGTKPLKICTA 291
           NGY   G +PL++  A
Sbjct: 341 NGY-RYGGRPLQLSYA 355


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 35.5 bits (78), Expect = 0.003
 Identities = 18/72 (25%), Positives = 39/72 (54%)
 Frame = +1

Query: 70  VGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAMNG 249
           V ++  ++ D  +  +F   +  I+   +  D+   +KG+G++++ N    RNAL  MNG
Sbjct: 344 VSNIHFNLTDEDVKAIF-EPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNG 402

Query: 250 YCGLGTKPLKIC 285
           +  L  + +++C
Sbjct: 403 F-DLAGRNMRVC 413



 Score = 31.1 bits (67), Expect = 0.069
 Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
 Frame = +1

Query: 4   RLNTASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYT 180
           R     R ++ + +     +V+V  L+  +    LY  F  +   ++ A+++ D  SG +
Sbjct: 222 RSRPRERSSKLSEEERDRRTVFVSQLANRLTSRELYDFF-EQAGPVRDAQIVRDKISGRS 280

Query: 181 KGYGFVRFGNEDEQRNALYAMNGYCGLG 264
           KG  +V F +ED  + A+ A++G   LG
Sbjct: 281 KGVAYVEFCHEDSVQAAI-ALSGKRLLG 307


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 33.9 bits (74), Expect = 0.010
 Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
 Frame = +1

Query: 64  VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNALYA 240
           V+VG++  ++ +  +  +F      +K+ ++++D  SG  KGYGF  + +     +A+  
Sbjct: 7   VYVGNIPYEMAEEQVIDIFKQS-GPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRN 65

Query: 241 MNGYCGLGTKPLKI 282
           +N Y   GT+ L++
Sbjct: 66  LNNY-DAGTRRLRV 78


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 32.3 bits (70), Expect = 0.030
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +1

Query: 166 NSGYTKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPK 300
           NSG +KGYGFV F   +    A   +NG   +G K + +C A  K
Sbjct: 420 NSGISKGYGFVAFRQIEAAVRAKDTLNGMM-VGKKRIFVCFAERK 463


>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
           Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 30.3 bits (65), Expect = 0.12
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 181 KGYGFVRFGNEDEQRNALYAMNG 249
           +G+GFV F N ++Q  A+  MNG
Sbjct: 258 RGFGFVSFANAEDQSRAIEEMNG 280



 Score = 27.5 bits (58), Expect = 0.85
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
 Frame = +1

Query: 7   LNTASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYT----SIKTAKVILDNSG 174
           ++ ++ ++    Q   +F V+VG LS       +  +F +  T    +I   +V      
Sbjct: 27  VHASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRL 86

Query: 175 YTKGYGFVRFGNEDEQRNALYAMNG 249
              G  FV F N+++   A+  +NG
Sbjct: 87  VPSGIAFVTFNNQEDVDKAIETLNG 111


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 29.5 bits (63), Expect = 0.21
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +1

Query: 64  VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYA 240
           ++V  L+P   D  L  +F S++  I + +VI D  +G +  Y F+ F N++    A + 
Sbjct: 246 LFVCKLNPVTQDEDLELIF-SRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFK 304

Query: 241 M 243
           M
Sbjct: 305 M 305


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 29.1 bits (62), Expect = 0.28
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +1

Query: 118 FASKYTSIKTAKVILD-NSGYTKGYGFVRFGN-EDEQRNALYAMNGYCGLGTKPLKICTA 291
           F S    IK A V+ +  +G  +GYGFV F   ED QR A    N    L  + L++  A
Sbjct: 24  FFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKELKNK--KLHGRILRLDFA 81

Query: 292 VPKPKSNL 315
            P+ +S +
Sbjct: 82  TPRKRSEV 89



 Score = 25.0 bits (52), Expect = 4.5
 Identities = 14/59 (23%), Positives = 27/59 (45%)
 Frame = +1

Query: 124 SKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPK 300
           SK+  ++  K+     G   G+ FV   +      A+ ++NG   +  +P+ +  AV K
Sbjct: 129 SKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNG-TEIDGRPIAVDWAVSK 186



 Score = 24.2 bits (50), Expect = 7.9
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +1

Query: 139 IKTAKVILDNSGY--TKGYGFVRFGNEDEQRNALYAMNG 249
           +K AKV  + +G   +KG+GF++F +      AL  +NG
Sbjct: 523 LKQAKVETEKAGAGRSKGFGFMQFISHKYALMALRWLNG 561


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 28.7 bits (61), Expect = 0.37
 Identities = 18/85 (21%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
 Frame = +1

Query: 10  NTASRETRA----NMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGY 177
           +T  RE+R     N Q  R   +++G++  ++DD+ + ++       + + + + D    
Sbjct: 120 STTERESRPFVPPNSQQMRRM-LFIGNIPKELDDFWMDKILRLS-GKLASWRRVADADNS 177

Query: 178 TKGYGFVRFGNEDEQRNALYAMNGY 252
              +GF  F + ++   AL A+N +
Sbjct: 178 MTSFGFAEFESNEQFSRALEALNDF 202


>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 28.3 bits (60), Expect = 0.49
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +1

Query: 70  VGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGF 195
           V  L P+VD +S+ +   S Y   K  K +   SGYT   GF
Sbjct: 178 VQKLIPNVD-FSVLKFGQSAYVDFKGVKCLFSRSGYTGEDGF 218


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 28.3 bits (60), Expect = 0.49
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 184 GYGFVRFGNEDEQRNALYAMNG 249
           G G V F  E++ RNAL ++NG
Sbjct: 135 GAGVVEFSTEEDMRNALTSLNG 156


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 28.3 bits (60), Expect = 0.49
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 124 SKYTSIKTAKVI-LDNSGYTKGYGFVRFGNEDEQRNALYAMNG 249
           SK+  IK+  +    ++  +KGYGFV F +  E   A+  +NG
Sbjct: 442 SKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNG 484



 Score = 27.1 bits (57), Expect = 1.1
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
 Frame = +1

Query: 55  EFSVWVGDLSPDVDDYSLYRVFA-----SKYTSIKTAKVILDNSGYTKGYGFVRFGNEDE 219
           E S++VG+L        L+ +F      SK+  +   K    +S     + F+ F N+  
Sbjct: 19  EISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCS 78

Query: 220 QRNALYAMNG 249
             NA+ ++NG
Sbjct: 79  ADNAIASLNG 88


>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 28.3 bits (60), Expect = 0.49
 Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
 Frame = +1

Query: 52  REFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAK---VILDNSGYTKGYGFVRFGNEDEQ 222
           R F + +   +P+  ++ L  VF S+  + +      V++  S YTK    +    E+  
Sbjct: 342 RGFGLLIPSCTPNNPNHVLGIVFDSEQNNPENGSKVTVMMGGSAYTKNTSLIPTNPEEAV 401

Query: 223 RNALYAMNGYCGLGTKP 273
            NAL A+     + +KP
Sbjct: 402 NNALKALQHTLKISSKP 418


>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 369

 Score = 27.9 bits (59), Expect = 0.64
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = +1

Query: 10  NTASRETRANMQHEREFSV-WVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKG 186
           NT S+        +   S+ +VG+L  +  D  L   F       +   +  +++G  KG
Sbjct: 211 NTLSKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKG 270

Query: 187 YGFVRFGNEDEQRNAL 234
           +GFV F + D    A+
Sbjct: 271 FGFVDFPDIDTCMKAM 286


>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 137

 Score = 27.5 bits (58), Expect = 0.85
 Identities = 16/63 (25%), Positives = 34/63 (53%)
 Frame = +1

Query: 64  VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAM 243
           +++ +LS  +    +Y +F  +Y  ++  ++ L N+  T+G  FV + N  + R A   +
Sbjct: 14  LFIKNLSFKITAEEMYDLFG-RYGPVR--QIRLGNTVQTRGTAFVVYENVQDARRACEKL 70

Query: 244 NGY 252
           +GY
Sbjct: 71  SGY 73


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 27.5 bits (58), Expect = 0.85
 Identities = 17/69 (24%), Positives = 34/69 (49%)
 Frame = +1

Query: 43  QHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQ 222
           QHE   ++WVG+L   V   ++   F S Y ++ + +++       K   F+ F + +  
Sbjct: 582 QHEPTHALWVGNLPSGVSATTVATTF-SAYGTVSSIRMLSH-----KHSAFLNFDSVETA 635

Query: 223 RNALYAMNG 249
           ++ L  +NG
Sbjct: 636 KHVLEELNG 644


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +1

Query: 58  FSVWVGDLSP-DVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNAL 234
           +S++VG L P +   Y L  +F SKY  +   K+I  +      + F+RF   D Q+ A 
Sbjct: 365 YSIFVGQLDPVNCTHYLLVDLF-SKYGKVIDCKII--HQSKKPAFAFLRF---DSQQAAY 418

Query: 235 YAMNG 249
            A+ G
Sbjct: 419 AAVCG 423


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 184 GYGFVRFGNEDEQRNALYAMNGY 252
           G+GFV F ++     A++AMNG+
Sbjct: 666 GFGFVEFKDKASAVAAMHAMNGF 688


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +1

Query: 58  FSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNAL 234
           + + V  + P+  +  +  +FA  +  +K   + LD  +GY KGY  + +   ++ + A+
Sbjct: 10  YIIIVTGVHPEATEEQVEDLFAD-FGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAV 68

Query: 235 YAMN 246
              N
Sbjct: 69  DEKN 72


>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 199

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 16/76 (21%), Positives = 29/76 (38%)
 Frame = +1

Query: 55  EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNAL 234
           E  + V +L  DV +  +  +F       K   +    +G +KG   + F    +   A 
Sbjct: 54  ESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPNGRSKGIATIIFSRPGDATRAY 113

Query: 235 YAMNGYCGLGTKPLKI 282
               G    GT+ +K+
Sbjct: 114 EQYEGRLVDGTRKMKV 129


>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 105

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 235 IVHYVAHLHYQI*QSHILLYSQNYLISL 152
           I+ ++  +HY I  S  LL + NYL+ L
Sbjct: 59  IIQHLKEIHYLISASAKLLLASNYLLEL 86


>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 124 SKYTSIKTAKVILDNSG-YTKGYGFVRFGNEDEQRNALYAMN 246
           SKY  ++   V+ DN G +  G  +VRF  E+  +NA+  +N
Sbjct: 85  SKYGEVEQL-VVCDNVGDHLVGNVYVRFKYEESAQNAIDDLN 125


>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 187 YGFVRFGNEDEQRNALY 237
           YG +R+G E+E R  +Y
Sbjct: 617 YGLIRYGYEEETRRLVY 633


>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 250 NHSWHIVHYVAHLHYQI*QSHILLYSQNYLISL*QFLWK 134
           N  WH VH +  +  Q+ +S IL Y Q   I     +WK
Sbjct: 307 NMQWHEVHCLNRVIAQVKKSLILCYVQCPSIEDFNKIWK 345


>SPBC18H10.03 |tif35||translation initiation factor
           eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 282

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
 Frame = +1

Query: 16  ASRETRANM-QHEREFSVW--VGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTK 183
           + RE+  +M + ER+ S    V +LS D  +  L  +F  ++  I+   +  D  +G  K
Sbjct: 185 SGRESGDSMFKRERDDSATLRVTNLSDDTREEELRDLFR-RFGGIQRVYLAKDKETGRAK 243

Query: 184 GYGFVRFGNEDEQRNALYAMNGY 252
           G+ FV + + D    A   ++GY
Sbjct: 244 GFAFVSYYDRDCAIKARDRLDGY 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.135    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,584,140
Number of Sequences: 5004
Number of extensions: 30369
Number of successful extensions: 111
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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