Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313D03f
(408 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 88 4e-19
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 80 2e-16
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 64 1e-11
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 50 1e-07
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 46 3e-06
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 45 4e-06
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 43 2e-05
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 36 0.003
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 34 0.010
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 32 0.030
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 30 0.12
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 29 0.21
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 29 0.28
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 29 0.37
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac... 28 0.49
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 28 0.49
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 28 0.49
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc... 28 0.49
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 28 0.64
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 27 0.85
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 0.85
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 26 2.0
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 26 2.0
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 2.0
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 26 2.0
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 3.4
SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po... 25 4.5
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces... 25 6.0
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc... 25 6.0
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 24 7.9
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 88.2 bits (209), Expect = 4e-19
Identities = 43/108 (39%), Positives = 74/108 (68%), Gaps = 3/108 (2%)
Frame = +1
Query: 1 FRLNTASRE--TRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NS 171
F+LN AS ++ E+S++VGDLSP+V+++ +Y +FAS+Y S K+AK++ D +
Sbjct: 165 FKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQT 224
Query: 172 GYTKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPKPKSNL 315
++GYGFVRF +E++Q++AL M G G +P+++ A PK K+++
Sbjct: 225 NVSRGYGFVRFTDENDQKSALAEMQGQI-CGDRPIRVGLATPKSKAHV 271
Score = 33.5 bits (73), Expect = 0.013
Identities = 22/89 (24%), Positives = 45/89 (50%)
Frame = +1
Query: 10 NTASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGY 189
NT++ + + ++ ++W+G+L P V + + +V+ + ++K + +G GY
Sbjct: 77 NTSNYGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGY 136
Query: 190 GFVRFGNEDEQRNALYAMNGYCGLGTKPL 276
FV F + E +A+ +MN GT L
Sbjct: 137 CFVEFASPHEASSAM-SMNNKPIPGTNHL 164
Score = 25.8 bits (54), Expect = 2.6
Identities = 21/74 (28%), Positives = 33/74 (44%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
+V+VG LS V + L KY +++ KG GFV+F N A+
Sbjct: 304 TVFVGGLSKFVSEEEL------KYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQ 357
Query: 241 MNGYCGLGTKPLKI 282
+ GY LG +++
Sbjct: 358 LQGY-PLGNSRIRL 370
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 79.8 bits (188), Expect = 2e-16
Identities = 40/93 (43%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Frame = +1
Query: 40 MQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNED 216
+ + EFS++VGDL P +D L+ F S Y S +AK+I+D +G ++ YGFVRF +E
Sbjct: 176 VSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEK 235
Query: 217 EQRNALYAMNGYCGLGTKPLKICTAVPKPKSNL 315
EQ++AL M GY G +PL+I A PK ++++
Sbjct: 236 EQQHALMHMQGYLCQG-RPLRISVASPKSRASI 267
Score = 28.7 bits (61), Expect = 0.37
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFAS--KYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNAL 234
++W+GDL P +D + +++AS + ++K + +S Y FV+F + AL
Sbjct: 86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERAL 145
Query: 235 YAMN 246
N
Sbjct: 146 MKYN 149
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 63.7 bits (148), Expect = 1e-11
Identities = 34/85 (40%), Positives = 51/85 (60%)
Frame = +1
Query: 58 FSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALY 237
F ++VG+L DV+D SLY+ F S+Y S+ KV+ D G T+G+GFV F + D+ A
Sbjct: 30 FRLFVGNLGNDVNDESLYQAF-SEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWR 88
Query: 238 AMNGYCGLGTKPLKICTAVPKPKSN 312
NG +G++P+K+ A K N
Sbjct: 89 EKNGKY-IGSRPVKLSRATSDVKPN 112
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 50.0 bits (114), Expect = 1e-07
Identities = 32/96 (33%), Positives = 52/96 (54%)
Frame = +1
Query: 4 RLNTASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTK 183
R+N AS++ N +++VG+L P VD+ LY F++ +K +V D +G +K
Sbjct: 83 RVNRASQDRGVNTLIGA--NLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSK 140
Query: 184 GYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTA 291
GYGFV + + + A+ AMN L KP+ + A
Sbjct: 141 GYGFVSYDSFETADAAIEAMNNQF-LMNKPITVSYA 175
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 45.6 bits (103), Expect = 3e-06
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Frame = +1
Query: 28 TRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRF 204
T+ + +V+VG LS +VDD L + F +Y +I A+VI+D SG +KGYG+V F
Sbjct: 253 TKPSQDSNETCTVFVGRLSWNVDDQWLGQEF-EEYGTIVGARVIMDGQSGRSKGYGYVDF 311
Query: 205 GNEDEQRNALYAMNGYCGLGTKPLKICTAVPKP 303
E A A NG + + + + + P+P
Sbjct: 312 -ETPEAAKAAVAANGTKEIDGRMVNLDLSNPRP 343
Score = 31.5 bits (68), Expect = 0.052
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNALY 237
+V+VG+LS + + L F I++ ++ D SG KG+G+V F + D + +
Sbjct: 367 TVFVGNLSFNATEDDLSTAFGG-CGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV- 424
Query: 238 AMNGYCGLGTKPLKICTAVPK 300
MNG+ G +P ++ + P+
Sbjct: 425 EMNGHFIAG-RPCRLDFSTPR 444
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 45.2 bits (102), Expect = 4e-06
Identities = 27/80 (33%), Positives = 44/80 (55%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
++++ +L +VDD L F S + +I +AK++ D G +KG+GFV + +E A+
Sbjct: 365 NLFIKNLQDEVDDERLKAEF-SAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTE 423
Query: 241 MNGYCGLGTKPLKICTAVPK 300
MN L KPL + A K
Sbjct: 424 MNQRM-LAGKPLYVALAQRK 442
Score = 44.8 bits (101), Expect = 5e-06
Identities = 22/63 (34%), Positives = 37/63 (58%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
+V++ +L P +D+ +L+ F S + I + KV +D G KGYGFV F + + A+
Sbjct: 169 NVFIKNLDPAIDNKALHDTF-SAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEH 227
Query: 241 MNG 249
+NG
Sbjct: 228 VNG 230
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 43.2 bits (97), Expect = 2e-05
Identities = 23/76 (30%), Positives = 45/76 (59%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAM 243
++VG+L D +L +F S+ A++ + +G +KG+G V+F NE++ +++ +
Sbjct: 282 IYVGNLPWATSDRNLLDLFTD-IGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKL 340
Query: 244 NGYCGLGTKPLKICTA 291
NGY G +PL++ A
Sbjct: 341 NGY-RYGGRPLQLSYA 355
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 35.5 bits (78), Expect = 0.003
Identities = 18/72 (25%), Positives = 39/72 (54%)
Frame = +1
Query: 70 VGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAMNG 249
V ++ ++ D + +F + I+ + D+ +KG+G++++ N RNAL MNG
Sbjct: 344 VSNIHFNLTDEDVKAIF-EPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNG 402
Query: 250 YCGLGTKPLKIC 285
+ L + +++C
Sbjct: 403 F-DLAGRNMRVC 413
Score = 31.1 bits (67), Expect = 0.069
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Frame = +1
Query: 4 RLNTASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYT 180
R R ++ + + +V+V L+ + LY F + ++ A+++ D SG +
Sbjct: 222 RSRPRERSSKLSEEERDRRTVFVSQLANRLTSRELYDFF-EQAGPVRDAQIVRDKISGRS 280
Query: 181 KGYGFVRFGNEDEQRNALYAMNGYCGLG 264
KG +V F +ED + A+ A++G LG
Sbjct: 281 KGVAYVEFCHEDSVQAAI-ALSGKRLLG 307
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 33.9 bits (74), Expect = 0.010
Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNALYA 240
V+VG++ ++ + + +F +K+ ++++D SG KGYGF + + +A+
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQS-GPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRN 65
Query: 241 MNGYCGLGTKPLKI 282
+N Y GT+ L++
Sbjct: 66 LNNY-DAGTRRLRV 78
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 32.3 bits (70), Expect = 0.030
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +1
Query: 166 NSGYTKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPK 300
NSG +KGYGFV F + A +NG +G K + +C A K
Sbjct: 420 NSGISKGYGFVAFRQIEAAVRAKDTLNGMM-VGKKRIFVCFAERK 463
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 30.3 bits (65), Expect = 0.12
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 181 KGYGFVRFGNEDEQRNALYAMNG 249
+G+GFV F N ++Q A+ MNG
Sbjct: 258 RGFGFVSFANAEDQSRAIEEMNG 280
Score = 27.5 bits (58), Expect = 0.85
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Frame = +1
Query: 7 LNTASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYT----SIKTAKVILDNSG 174
++ ++ ++ Q +F V+VG LS + +F + T +I +V
Sbjct: 27 VHASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRL 86
Query: 175 YTKGYGFVRFGNEDEQRNALYAMNG 249
G FV F N+++ A+ +NG
Sbjct: 87 VPSGIAFVTFNNQEDVDKAIETLNG 111
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 29.5 bits (63), Expect = 0.21
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYA 240
++V L+P D L +F S++ I + +VI D +G + Y F+ F N++ A +
Sbjct: 246 LFVCKLNPVTQDEDLELIF-SRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFK 304
Query: 241 M 243
M
Sbjct: 305 M 305
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 29.1 bits (62), Expect = 0.28
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +1
Query: 118 FASKYTSIKTAKVILD-NSGYTKGYGFVRFGN-EDEQRNALYAMNGYCGLGTKPLKICTA 291
F S IK A V+ + +G +GYGFV F ED QR A N L + L++ A
Sbjct: 24 FFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKELKNK--KLHGRILRLDFA 81
Query: 292 VPKPKSNL 315
P+ +S +
Sbjct: 82 TPRKRSEV 89
Score = 25.0 bits (52), Expect = 4.5
Identities = 14/59 (23%), Positives = 27/59 (45%)
Frame = +1
Query: 124 SKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPK 300
SK+ ++ K+ G G+ FV + A+ ++NG + +P+ + AV K
Sbjct: 129 SKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNG-TEIDGRPIAVDWAVSK 186
Score = 24.2 bits (50), Expect = 7.9
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +1
Query: 139 IKTAKVILDNSGY--TKGYGFVRFGNEDEQRNALYAMNG 249
+K AKV + +G +KG+GF++F + AL +NG
Sbjct: 523 LKQAKVETEKAGAGRSKGFGFMQFISHKYALMALRWLNG 561
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 28.7 bits (61), Expect = 0.37
Identities = 18/85 (21%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Frame = +1
Query: 10 NTASRETRA----NMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGY 177
+T RE+R N Q R +++G++ ++DD+ + ++ + + + + D
Sbjct: 120 STTERESRPFVPPNSQQMRRM-LFIGNIPKELDDFWMDKILRLS-GKLASWRRVADADNS 177
Query: 178 TKGYGFVRFGNEDEQRNALYAMNGY 252
+GF F + ++ AL A+N +
Sbjct: 178 MTSFGFAEFESNEQFSRALEALNDF 202
>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 28.3 bits (60), Expect = 0.49
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 70 VGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGF 195
V L P+VD +S+ + S Y K K + SGYT GF
Sbjct: 178 VQKLIPNVD-FSVLKFGQSAYVDFKGVKCLFSRSGYTGEDGF 218
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 28.3 bits (60), Expect = 0.49
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 184 GYGFVRFGNEDEQRNALYAMNG 249
G G V F E++ RNAL ++NG
Sbjct: 135 GAGVVEFSTEEDMRNALTSLNG 156
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 28.3 bits (60), Expect = 0.49
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 124 SKYTSIKTAKVI-LDNSGYTKGYGFVRFGNEDEQRNALYAMNG 249
SK+ IK+ + ++ +KGYGFV F + E A+ +NG
Sbjct: 442 SKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNG 484
Score = 27.1 bits (57), Expect = 1.1
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Frame = +1
Query: 55 EFSVWVGDLSPDVDDYSLYRVFA-----SKYTSIKTAKVILDNSGYTKGYGFVRFGNEDE 219
E S++VG+L L+ +F SK+ + K +S + F+ F N+
Sbjct: 19 EISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCS 78
Query: 220 QRNALYAMNG 249
NA+ ++NG
Sbjct: 79 ADNAIASLNG 88
>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 28.3 bits (60), Expect = 0.49
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Frame = +1
Query: 52 REFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAK---VILDNSGYTKGYGFVRFGNEDEQ 222
R F + + +P+ ++ L VF S+ + + V++ S YTK + E+
Sbjct: 342 RGFGLLIPSCTPNNPNHVLGIVFDSEQNNPENGSKVTVMMGGSAYTKNTSLIPTNPEEAV 401
Query: 223 RNALYAMNGYCGLGTKP 273
NAL A+ + +KP
Sbjct: 402 NNALKALQHTLKISSKP 418
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 27.9 bits (59), Expect = 0.64
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +1
Query: 10 NTASRETRANMQHEREFSV-WVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKG 186
NT S+ + S+ +VG+L + D L F + + +++G KG
Sbjct: 211 NTLSKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKG 270
Query: 187 YGFVRFGNEDEQRNAL 234
+GFV F + D A+
Sbjct: 271 FGFVDFPDIDTCMKAM 286
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 27.5 bits (58), Expect = 0.85
Identities = 16/63 (25%), Positives = 34/63 (53%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAM 243
+++ +LS + +Y +F +Y ++ ++ L N+ T+G FV + N + R A +
Sbjct: 14 LFIKNLSFKITAEEMYDLFG-RYGPVR--QIRLGNTVQTRGTAFVVYENVQDARRACEKL 70
Query: 244 NGY 252
+GY
Sbjct: 71 SGY 73
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 27.5 bits (58), Expect = 0.85
Identities = 17/69 (24%), Positives = 34/69 (49%)
Frame = +1
Query: 43 QHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQ 222
QHE ++WVG+L V ++ F S Y ++ + +++ K F+ F + +
Sbjct: 582 QHEPTHALWVGNLPSGVSATTVATTF-SAYGTVSSIRMLSH-----KHSAFLNFDSVETA 635
Query: 223 RNALYAMNG 249
++ L +NG
Sbjct: 636 KHVLEELNG 644
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 2.0
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +1
Query: 58 FSVWVGDLSP-DVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNAL 234
+S++VG L P + Y L +F SKY + K+I + + F+RF D Q+ A
Sbjct: 365 YSIFVGQLDPVNCTHYLLVDLF-SKYGKVIDCKII--HQSKKPAFAFLRF---DSQQAAY 418
Query: 235 YAMNG 249
A+ G
Sbjct: 419 AAVCG 423
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 26.2 bits (55), Expect = 2.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 184 GYGFVRFGNEDEQRNALYAMNGY 252
G+GFV F ++ A++AMNG+
Sbjct: 666 GFGFVEFKDKASAVAAMHAMNGF 688
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 26.2 bits (55), Expect = 2.0
Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +1
Query: 58 FSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNAL 234
+ + V + P+ + + +FA + +K + LD +GY KGY + + ++ + A+
Sbjct: 10 YIIIVTGVHPEATEEQVEDLFAD-FGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAV 68
Query: 235 YAMN 246
N
Sbjct: 69 DEKN 72
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 26.2 bits (55), Expect = 2.0
Identities = 16/76 (21%), Positives = 29/76 (38%)
Frame = +1
Query: 55 EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNAL 234
E + V +L DV + + +F K + +G +KG + F + A
Sbjct: 54 ESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPNGRSKGIATIIFSRPGDATRAY 113
Query: 235 YAMNGYCGLGTKPLKI 282
G GT+ +K+
Sbjct: 114 EQYEGRLVDGTRKMKV 129
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 25.4 bits (53), Expect = 3.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 235 IVHYVAHLHYQI*QSHILLYSQNYLISL 152
I+ ++ +HY I S LL + NYL+ L
Sbjct: 59 IIQHLKEIHYLISASAKLLLASNYLLEL 86
>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 25.0 bits (52), Expect = 4.5
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 124 SKYTSIKTAKVILDNSG-YTKGYGFVRFGNEDEQRNALYAMN 246
SKY ++ V+ DN G + G +VRF E+ +NA+ +N
Sbjct: 85 SKYGEVEQL-VVCDNVGDHLVGNVYVRFKYEESAQNAIDDLN 125
>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 735
Score = 24.6 bits (51), Expect = 6.0
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 187 YGFVRFGNEDEQRNALY 237
YG +R+G E+E R +Y
Sbjct: 617 YGLIRYGYEEETRRLVY 633
>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
Sen2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 24.6 bits (51), Expect = 6.0
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -3
Query: 250 NHSWHIVHYVAHLHYQI*QSHILLYSQNYLISL*QFLWK 134
N WH VH + + Q+ +S IL Y Q I +WK
Sbjct: 307 NMQWHEVHCLNRVIAQVKKSLILCYVQCPSIEDFNKIWK 345
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 24.2 bits (50), Expect = 7.9
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Frame = +1
Query: 16 ASRETRANM-QHEREFSVW--VGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTK 183
+ RE+ +M + ER+ S V +LS D + L +F ++ I+ + D +G K
Sbjct: 185 SGRESGDSMFKRERDDSATLRVTNLSDDTREEELRDLFR-RFGGIQRVYLAKDKETGRAK 243
Query: 184 GYGFVRFGNEDEQRNALYAMNGY 252
G+ FV + + D A ++GY
Sbjct: 244 GFAFVSYYDRDCAIKARDRLDGY 266
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.135 0.415
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,584,140
Number of Sequences: 5004
Number of extensions: 30369
Number of successful extensions: 111
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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